Year |
Citation |
Score |
2014 |
Beutler AS, Kulkarni AA, Kanwar R, Klein CJ, Therneau TM, Qin R, Banck MS, Boora GK, Ruddy KJ, Wu Y, Smalley RL, Cunningham JM, Le-Lindqwister NA, Beyerlein P, Schroth GP, et al. Sequencing of Charcot-Marie-Tooth disease genes in a toxic polyneuropathy. Annals of Neurology. 76: 727-37. PMID 25164601 DOI: 10.1002/ana.24265 |
0.92 |
|
2014 |
. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nature Biotechnology. 32: 903-14. PMID 25150838 DOI: 10.1038/nbt.2957 |
0.92 |
|
2014 |
Chandler JA, Thongsripong P, Green A, Kittayapong P, Wilcox BA, Schroth GP, Kapan DD, Bennett SN. Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses. Virology. 464: 312-9. PMID 25108381 DOI: 10.1016/j.virol.2014.06.036 |
0.92 |
|
2014 |
Mestdagh P, Hartmann N, Baeriswyl L, Andreasen D, Bernard N, Chen C, Cheo D, D'Andrade P, DeMayo M, Dennis L, Derveaux S, Feng Y, Fulmer-Smentek S, Gerstmayer B, Gouffon J, ... ... Schroth G, et al. Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study. Nature Methods. 11: 809-15. PMID 24973947 DOI: 10.1038/nmeth.3014 |
0.92 |
|
2014 |
Josset L, Tchitchek N, Gralinski LE, Ferris MT, Eisfeld AJ, Green RR, Thomas MJ, Tisoncik-Go J, Schroth GP, Kawaoka Y, Manuel de Villena FP, Baric RS, Heise MT, Peng X, Katze MG. Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts. Rna Biology. 11: 875-90. PMID 24922324 DOI: 10.4161/rna.29442 |
0.92 |
|
2014 |
Xiong H, Morrison J, Ferris MT, Gralinski LE, Whitmore AC, Green R, Thomas MJ, Tisoncik-Go J, Schroth GP, Pardo-Manuel de Villena F, Baric RS, Heise MT, Peng X, Katze MG. Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression. G3 (Bethesda, Md.). 4: 1429-44. PMID 24902603 DOI: 10.1534/g3.114.011759 |
0.92 |
|
2014 |
Tome JM, Ozer A, Pagano JM, Gheba D, Schroth GP, Lis JT. Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling. Nature Methods. 11: 683-8. PMID 24809628 DOI: 10.1038/nmeth.2970 |
0.92 |
|
2014 |
Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... Schroth GP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/gr.143891.112 |
0.92 |
|
2014 |
Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Research. 24: 496-510. PMID 24299736 DOI: 10.1101/gr.161034.113 |
0.92 |
|
2014 |
Mestdagh P, Hartmann N, Baeriswyl L, Andreasen D, Bernard N, Chen C, Cheo D, D'Andrade P, DeMayo M, Dennis L, Derveaux S, Feng Y, Fulmer-Smentek S, Gerstmayer B, Gouffon J, ... ... Schroth G, et al. Corrigendum: Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study (Nature Methods (2014) 11, (809-815)) Nature Methods. 11: 971. DOI: 10.1038/nmeth0914-971b |
0.92 |
|
2013 |
Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S. Cohesin-mediated interactions organize chromosomal domain architecture Embo Journal. 32: 3119-3129. PMID 24185899 DOI: 10.1038/emboj.2013.237 |
0.92 |
|
2013 |
Rienhoff HY, Yeo CY, Morissette R, Khrebtukova I, Melnick J, Luo S, Leng N, Kim YJ, Schroth G, Westwick J, Vogel H, McDonnell N, Hall JG, Whitman M. A mutation in TGFB3 associated with a syndrome of low muscle mass, growth retardation, distal arthrogryposis and clinical features overlapping with Marfan and Loeys-Dietz syndrome. American Journal of Medical Genetics. Part A. 161: 2040-6. PMID 23824657 DOI: 10.1002/ajmg.a.36056 |
0.92 |
|
2013 |
Dinwiddie DL, Kingsmore SF, Caracciolo S, Rossi G, Moratto D, Mazza C, Sabelli C, Bacchetta R, Passerini L, Magri C, Bell CJ, Miller NA, Hateley SL, Saunders CJ, Zhang L, ... Schroth GP, et al. Combined DOCK8 and CLEC7A mutations causing immunodeficiency in 3 brothers with diarrhea, eczema, and infections. The Journal of Allergy and Clinical Immunology. 131: 594-7.e1-3. PMID 23374272 DOI: 10.1016/j.jaci.2012.10.062 |
0.92 |
|
2013 |
Pipes L, Li S, Bozinoski M, Palermo R, Peng X, Blood P, Kelly S, Weiss JM, Thierry-Mieg J, Thierry-Mieg D, Zumbo P, Chen R, Schroth GP, Mason CE, Katze MG. The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics. Nucleic Acids Research. 41: D906-14. PMID 23203872 DOI: 10.1093/nar/gks1268 |
0.92 |
|
2012 |
Cann GM, Gulzar ZG, Cooper S, Li R, Luo S, Tat M, Stuart S, Schroth G, Srinivas S, Ronaghi M, Brooks JD, Talasaz AH. mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer. Plos One. 7: e49144. PMID 23145101 DOI: 10.1371/journal.pone.0049144 |
0.92 |
|
2012 |
Qiu S, Luo S, Evgrafov O, Li R, Schroth GP, Levitt P, Knowles JA, Wang K. Single-neuron RNA-Seq: technical feasibility and reproducibility. Frontiers in Genetics. 3: 124. PMID 22934102 DOI: 10.3389/fgene.2012.00124 |
0.92 |
|
2012 |
Wang ET, Cody NA, Jog S, Biancolella M, Wang TT, Treacy DJ, Luo S, Schroth GP, Housman DE, Reddy S, Lécuyer E, Burge CB. Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins. Cell. 150: 710-24. PMID 22901804 DOI: 10.1016/j.cell.2012.06.041 |
0.92 |
|
2012 |
Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells Nature Biotechnology. 30: 777-782. PMID 22820318 DOI: 10.1038/nbt.2282 |
0.92 |
|
2012 |
Hardt O, Wild S, Oerlecke I, Hofmann K, Luo S, Wiencek Y, Kantelhardt E, Vess C, Smith GP, Schroth GP, Bosio A, Dittmer J. Highly sensitive profiling of CD44+/CD24- breast cancer stem cells by combining global mRNA amplification and next generation sequencing: evidence for a hyperactive PI3K pathway. Cancer Letters. 325: 165-74. PMID 22771536 DOI: 10.1016/j.canlet.2012.06.010 |
0.92 |
|
2012 |
Akalin A, Garrett-Bakelman FE, Kormaksson M, Busuttil J, Zhang L, Khrebtukova I, Milne TA, Huang Y, Biswas D, Hess JL, Allis CD, Roeder RG, Valk PJ, Löwenberg B, Delwel R, ... ... Schroth GP, et al. Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia. Plos Genetics. 8: e1002781. PMID 22737091 DOI: 10.1371/journal.pgen.1002781 |
0.92 |
|
2012 |
Asmann YW, Necela BM, Kalari KR, Hossain A, Baker TR, Carr JM, Davis C, Getz JE, Hostetter G, Li X, McLaughlin SA, Radisky DC, Schroth GP, Cunliffe HE, Perez EA, et al. Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer. Cancer Research. 72: 1921-8. PMID 22496456 DOI: 10.1158/0008-5472.CAN-11-3142 |
0.92 |
|
2012 |
Badolato R, Prandini A, Caracciolo S, Colombo F, Tabellini G, Giacomelli M, Cantarini ME, Pession A, Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Saunders CJ, Zhang L, Schroth GP, et al. Exome sequencing reveals a pallidin mutation in a Hermansky-Pudlak-like primary immunodeficiency syndrome. Blood. 119: 3185-7. PMID 22461475 DOI: 10.1182/blood-2012-01-404350 |
0.92 |
|
2012 |
Hartung T, Zhang L, Kanwar R, Khrebtukova I, Reinhardt M, Wang C, Therneau TM, Banck MS, Schroth GP, Beutler AS. Diametrically opposite methylome-transcriptome relationships in high-and low-CpG promoter genes in postmitotic neural rat tissue Epigenetics. 7: 421-428. PMID 22415013 DOI: 10.4161/epi.19565 |
0.92 |
|
2012 |
Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, ... ... Schroth G, et al. Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell. 148: 780-91. PMID 22341448 DOI: 10.1016/j.cell.2011.11.065 |
0.92 |
|
2012 |
Luo S, Smith GP, Khrebtukova I, Schroth GP. Total RNA-seq: Complete analysis of the transcriptome using illumina sequencing-by-synthesis sequencing Tag-Based Next Generation Sequencing. 367-381. DOI: 10.1002/9783527644582.ch23 |
0.92 |
|
2011 |
Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S, Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C, Kawaoka Y, Baric RS, et al. Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. Mbio. 2. PMID 22086488 DOI: 10.1128/mBio.00198-11 |
0.92 |
|
2011 |
Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S, Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C, Kawaoka Y, Baric RS, et al. Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. Mbio. 2. PMID 22086488 DOI: 10.1128/mBio.00198-11 |
0.92 |
|
2011 |
Martin DI, Singer M, Dhahbi J, Mao G, Zhang L, Schroth GP, Pachter L, Boffelli D. Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states. Genome Research. 21: 2049-57. PMID 21908772 DOI: 10.1101/gr.122721.111 |
0.92 |
|
2011 |
Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J. Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq. Nucleic Acids Research. 39: e140. PMID 21880599 DOI: 10.1093/nar/gkr617 |
0.92 |
|
2011 |
Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/journal.pone.0023501 |
0.92 |
|
2011 |
Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/journal.pone.0023501 |
0.92 |
|
2011 |
Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R. High density DNA methylation array with single CpG site resolution. Genomics. 98: 288-95. PMID 21839163 DOI: 10.1016/j.ygeno.2011.07.007 |
0.92 |
|
2011 |
Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R. High density DNA methylation array with single CpG site resolution. Genomics. 98: 288-95. PMID 21839163 DOI: 10.1016/j.ygeno.2011.07.007 |
0.92 |
|
2011 |
Lee EJ, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi JH, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Research. 39: e127. PMID 21785137 DOI: 10.1093/nar/gkr598 |
0.92 |
|
2011 |
Lee EJ, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi JH, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Research. 39: e127. PMID 21785137 DOI: 10.1093/nar/gkr598 |
0.92 |
|
2011 |
Hafner M, Renwick N, Brown M, Mihailovi? A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T. RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries. Rna (New York, N.Y.). 17: 1697-712. PMID 21775473 DOI: 10.1261/rna.2799511 |
0.92 |
|
2011 |
Nutiu R, Friedman RC, Luo S, Khrebtukova I, Silva D, Li R, Zhang L, Schroth GP, Burge CB. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument. Nature Biotechnology. 29: 659-64. PMID 21706015 DOI: 10.1038/nbt.1882 |
0.92 |
|
2011 |
Nutiu R, Friedman RC, Luo S, Khrebtukova I, Silva D, Li R, Zhang L, Schroth GP, Burge CB. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument. Nature Biotechnology. 29: 659-64. PMID 21706015 DOI: 10.1038/nbt.1882 |
0.92 |
|
2011 |
Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines. Nucleic Acids Research. 39: e100. PMID 21622959 DOI: 10.1093/nar/gkr362 |
0.92 |
|
2011 |
Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines. Nucleic Acids Research. 39: e100. PMID 21622959 DOI: 10.1093/nar/gkr362 |
0.92 |
|
2011 |
Sun Z, Asmann YW, Kalari KR, Bot B, Eckel-Passow JE, Baker TR, Carr JM, Khrebtukova I, Luo S, Zhang L, Schroth GP, Perez EA, Thompson EA. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing. Plos One. 6: e17490. PMID 21364760 DOI: 10.1371/journal.pone.0017490 |
0.92 |
|
2011 |
Sun Z, Asmann YW, Kalari KR, Bot B, Eckel-Passow JE, Baker TR, Carr JM, Khrebtukova I, Luo S, Zhang L, Schroth GP, Perez EA, Thompson EA. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing. Plos One. 6: e17490. PMID 21364760 DOI: 10.1371/journal.pone.0017490 |
0.92 |
|
2011 |
Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA, Eisen MB. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Plos Biology. 9: e1000590. PMID 21346796 DOI: 10.1371/journal.pbio.1000590 |
0.92 |
|
2011 |
Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA, Eisen MB. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Plos Biology. 9: e1000590. PMID 21346796 DOI: 10.1371/journal.pbio.1000590 |
0.92 |
|
2011 |
Feber A, Wilson GA, Zhang L, Presneau N, Idowu B, Down TA, Rakyan VK, Noon LA, Lloyd AC, Stupka E, Schiza V, Teschendorff AE, Schroth GP, Flanagan A, Beck S. Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Research. 21: 515-24. PMID 21324880 DOI: 10.1101/gr.109678.110 |
0.92 |
|
2011 |
Feber A, Wilson GA, Zhang L, Presneau N, Idowu B, Down TA, Rakyan VK, Noon LA, Lloyd AC, Stupka E, Schiza V, Teschendorff AE, Schroth GP, Flanagan A, Beck S. Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Research. 21: 515-24. PMID 21324880 DOI: 10.1101/gr.109678.110 |
0.92 |
|
2011 |
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (New York, N.Y.). 331: 463-7. PMID 21273488 DOI: 10.1126/science.1200387 |
0.92 |
|
2011 |
Grober OM, Mutarelli M, Giurato G, Ravo M, Cicatiello L, De Filippo MR, Ferraro L, Nassa G, Papa MF, Paris O, Tarallo R, Luo S, Schroth GP, Benes V, Weisz A. Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation. Bmc Genomics. 12: 36. PMID 21235772 DOI: 10.1186/1471-2164-12-36 |
0.92 |
|
2011 |
Grober OM, Mutarelli M, Giurato G, Ravo M, Cicatiello L, De Filippo MR, Ferraro L, Nassa G, Papa MF, Paris O, Tarallo R, Luo S, Schroth GP, Benes V, Weisz A. Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation. Bmc Genomics. 12: 36. PMID 21235772 DOI: 10.1186/1471-2164-12-36 |
0.92 |
|
2011 |
Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Ganusova EE, Mudge J, Langley RJ, Zhang L, Lee CC, Schilkey FD, Sheth V, Woodward JE, Peckham HE, Schroth GP, Kim RW, et al. Carrier testing for severe childhood recessive diseases by next-generation sequencing. Science Translational Medicine. 3: 65ra4. PMID 21228398 DOI: 10.1126/scitranslmed.3001756 |
0.92 |
|
2011 |
Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Ganusova EE, Mudge J, Langley RJ, Zhang L, Lee CC, Schilkey FD, Sheth V, Woodward JE, Peckham HE, Schroth GP, Kim RW, et al. Carrier testing for severe childhood recessive diseases by next-generation sequencing. Science Translational Medicine. 3: 65ra4. PMID 21228398 DOI: 10.1126/scitranslmed.3001756 |
0.92 |
|
2011 |
Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE. Methods in Molecular Biology (Clifton, N.J.). 687: 135-46. PMID 20967605 DOI: 10.1007/978-1-60761-944-4_9 |
0.92 |
|
2011 |
Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE. Methods in Molecular Biology (Clifton, N.J.). 687: 135-46. PMID 20967605 DOI: 10.1007/978-1-60761-944-4_9 |
0.92 |
|
2010 |
Coleman SJ, Zeng Z, Wang K, Luo S, Khrebtukova I, Mienaltowski MJ, Schroth GP, Liu J, MacLeod JN. Structural annotation of equine protein-coding genes determined by mRNA sequencing Animal Genetics. 41: 121-130. PMID 21070285 DOI: 10.1111/j.1365-2052.2010.02118.x |
0.92 |
|
2010 |
Singer M, Boffelli D, Dhahbi J, Schönhuth A, Schroth GP, Martin DI, Pachter L. MetMap enables genome-scale Methyltyping for determining methylation states in populations. Plos Computational Biology. 6: e1000888. PMID 20856582 DOI: 10.1371/journal.pcbi.1000888 |
0.92 |
|
2010 |
Singer M, Boffelli D, Dhahbi J, Schönhuth A, Schroth GP, Martin DI, Pachter L. MetMap enables genome-scale Methyltyping for determining methylation states in populations. Plos Computational Biology. 6: e1000888. PMID 20856582 DOI: 10.1371/journal.pcbi.1000888 |
0.92 |
|
2010 |
Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. Plos One. 5: e12010. PMID 20700453 DOI: 10.1371/journal.pone.0012010 |
0.92 |
|
2010 |
Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. Plos One. 5: e12010. PMID 20700453 DOI: 10.1371/journal.pone.0012010 |
0.92 |
|
2010 |
Woodhouse SD, Narayan R, Latham S, Lee S, Antrobus R, Gangadharan B, Luo S, Schroth GP, Klenerman P, Zitzmann N. Transcriptome sequencing, microarray, and proteomic analyses reveal cellular and metabolic impact of hepatitis C virus infection in vitro Hepatology. 52: 443-453. PMID 20683944 DOI: 10.1002/hep.23733 |
0.92 |
|
2010 |
Boellmann F, Zhang L, Clewell HJ, Schroth GP, Kenyon EM, Andersen ME, Thomas RS. Genome-wide analysis of DNA methylation and gene expression changes in the mouse lung following subchronic arsenate exposure Toxicological Sciences. 117: 404-417. PMID 20667999 DOI: 10.1093/toxsci/kfq225 |
0.92 |
|
2010 |
Gregg C, Zhang J, Weissbourd B, Luo S, Schroth GP, Haig D, Dulac C. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science (New York, N.Y.). 329: 643-8. PMID 20616232 DOI: 10.1126/science.1190830 |
0.92 |
|
2010 |
Gregg C, Zhang J, Weissbourd B, Luo S, Schroth GP, Haig D, Dulac C. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science (New York, N.Y.). 329: 643-8. PMID 20616232 DOI: 10.1126/science.1190830 |
0.92 |
|
2010 |
Hammer P, Banck MS, Amberg R, Wang C, Petznick G, Luo S, Khrebtukova I, Schroth GP, Beyerlein P, Beutler AS. mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain Genome Research. 20: 847-860. PMID 20452967 DOI: 10.1101/gr.101204.109 |
0.92 |
|
2010 |
Baranzini SE, Mudge J, van Velkinburgh JC, Khankhanian P, Khrebtukova I, Miller NA, Zhang L, Farmer AD, Bell CJ, Kim RW, May GD, Woodward JE, Caillier SJ, McElroy JP, Gomez R, ... ... Schroth GP, et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 464: 1351-6. PMID 20428171 DOI: 10.1038/nature08990 |
0.92 |
|
2010 |
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes & Development. 24: 992-1009. PMID 20413612 DOI: 10.1101/gad.1884710 |
0.92 |
|
2010 |
Cicatiello L, Mutarelli M, Grober OMV, Paris O, Ferraro L, Ravo M, Tarallo R, Luo S, Schroth GP, Seifert M, Zinser C, Chiusano ML, Traini A, De Bortoli M, Weisz A. Estrogen receptor α controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs American Journal of Pathology. 176: 2113-2130. PMID 20348243 DOI: 10.2353/ajpath.2010.090837 |
0.92 |
|
2010 |
Filiatrault MJ, Stodghill PV, Bronstein PA, Moll S, Lindeberg M, Grills G, Schweitzer P, Wang W, Schroth GP, Luo S, Khrebtukova I, Yang Y, Thannhauser T, Butcher BG, Cartinhour S, et al. Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity. Journal of Bacteriology. 192: 2359-72. PMID 20190049 DOI: 10.1128/JB.01445-09 |
0.92 |
|
2010 |
Lakdawalla A, Schroth GP. Mutation Discovery with the Illumina® Genome Analyzer The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles. 101-120. DOI: 10.1002/9783527629398.ch6 |
0.92 |
|
2009 |
Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM. Chimeric transcript discovery by paired-end transcriptome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 12353-8. PMID 19592507 DOI: 10.1073/pnas.0904720106 |
0.92 |
|
2009 |
Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Research. 19: 1044-56. PMID 19273619 DOI: 10.1101/gr.088773.108 |
0.92 |
|
2009 |
Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Research. 19: 1044-56. PMID 19273619 DOI: 10.1101/gr.088773.108 |
0.92 |
|
2009 |
German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nature Protocols. 4: 356-62. PMID 19247285 DOI: 10.1038/nprot.2009.8 |
0.92 |
|
2009 |
Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/pnas.0812841106 |
0.92 |
|
2008 |
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, ... ... Schroth GP, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 456: 53-9. PMID 18987734 DOI: 10.1038/nature07517 |
0.92 |
|
2008 |
Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, ... ... Schroth GP, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 456: 53-9. PMID 18987734 DOI: 10.1038/nature07517 |
0.92 |
|
2008 |
Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, ... ... Schroth GP, et al. Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. Plos One. 3: e3625. PMID 18985160 DOI: 10.1371/journal.pone.0003625 |
0.92 |
|
2008 |
Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, ... ... Schroth GP, et al. Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. Plos One. 3: e3625. PMID 18985160 DOI: 10.1371/journal.pone.0003625 |
0.92 |
|
2008 |
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature. 456: 470-6. PMID 18978772 DOI: 10.1038/nature07509 |
0.92 |
|
2008 |
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature. 456: 470-6. PMID 18978772 DOI: 10.1038/nature07509 |
0.92 |
|
2008 |
Chen J, Lozach J, Garcia EW, Barnes B, Luo S, Mikoulitch I, Zhou L, Schroth G, Fan JB. Highly sensitive and specific microRNA expression profiling using BeadArray technology Nucleic Acids Research. 36. PMID 18579563 DOI: 10.1093/nar/gkn387 |
0.92 |
|
2008 |
Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Molecular Cell. 31: 67-78. PMID 18571452 DOI: 10.1016/j.molcel.2008.06.002 |
0.92 |
|
2008 |
Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Molecular Cell. 31: 67-78. PMID 18571452 DOI: 10.1016/j.molcel.2008.06.002 |
0.92 |
|
2008 |
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nature Biotechnology. 26: 941-6. PMID 18542052 DOI: 10.1038/nbt1417 |
0.92 |
|
2008 |
Schroth GP. mRNA analysis with next-gen sequencing Genetic Engineering and Biotechnology News. 28. |
0.92 |
|
2006 |
Guo L, Zhang L, Sun Y, Muskhelishvili L, Blann E, Dial S, Shi L, Schroth G, Dragan YP. Differences in hepatotoxicity and gene expression profiles by anti-diabetic PPAR γ agonists on rat primary hepatocytes and human HepG2 cells Molecular Diversity. 10: 349-360. PMID 17031537 DOI: 10.1007/s11030-006-9038-0 |
0.92 |
|
2002 |
Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598 |
0.92 |
|
2002 |
Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598 |
0.92 |
|
1999 |
Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/nar/27.2.543 |
0.92 |
|
1999 |
Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/nar/27.2.543 |
0.92 |
|
1996 |
Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i |
0.92 |
|
1996 |
Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i |
0.92 |
|
1996 |
Brown ML, Schroth GP, Gottesfeld JM, Bazett-Jones DP. Protein and DNA requirements for the transcription factor IIIA-induced distortion of the 5 S rRNA gene promoter Journal of Molecular Biology. 262: 600-614. PMID 8876641 DOI: 10.1006/jmbi.1996.0539 |
0.92 |
|
1995 |
Yaneva J, Schroth GP, Van Holde KE, Zlatanova J. High-affinity binding sites for histone H1 in plasmid DNA Proceedings of the National Academy of Sciences of the United States of America. 92: 7060-7064. PMID 7624369 DOI: 10.1073/pnas.92.15.7060 |
0.92 |
|
1995 |
Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/pnas.92.14.6464 |
0.92 |
|
1995 |
Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/pnas.92.14.6464 |
0.92 |
|
1995 |
Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/jmbi.1995.0336 |
0.92 |
|
1995 |
Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/jmbi.1995.0336 |
0.92 |
|
1995 |
Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/nar/23.11.1977 |
0.92 |
|
1995 |
Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/nar/23.11.1977 |
0.92 |
|
1994 |
Varga-Weisz P, Zlatanova J, Leuba SH, Schroth GP, Van Holde K. Binding of histones H1 and H5 and their globular domains to four-way junction DNA Proceedings of the National Academy of Sciences of the United States of America. 91: 3525-3529. PMID 8170940 |
0.92 |
|
1993 |
Hong L, Schroth GP, Matthews HR, Yau P, Bradbury EM. Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 'tail' to DNA Journal of Biological Chemistry. 268: 305-314. PMID 8416938 |
0.92 |
|
1993 |
Schroth GP, Kagawa TF, Ho PS. Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). Biochemistry. 32: 13381-92. PMID 8257675 DOI: 10.1021/bi00212a002 |
0.92 |
|
1992 |
Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856 |
0.92 |
|
1992 |
Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856 |
0.92 |
|
1992 |
Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826 |
0.92 |
|
1992 |
Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826 |
0.92 |
|
1991 |
Schroth GP, Gottesfeld JM, Bradbury EM. TFIIIA induced DNA bending: Effect of low ionic strength electrophoresis buffer conditions Nucleic Acids Research. 19: 511-516. PMID 2011525 DOI: 10.1093/nar/19.3.511 |
0.92 |
|
1991 |
Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069 |
0.92 |
|
1991 |
Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069 |
0.92 |
|
1990 |
Schroth GP, Yau P, Imai BS, Gatewood JM, Bradbury EM. A NMR study of mobility in the histone octamer Febs Letters. 268: 117-120. PMID 2384147 DOI: 10.1016/0014-5793(90)80987-T |
0.92 |
|
1990 |
Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113 |
0.92 |
|
1990 |
Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113 |
0.92 |
|
1989 |
Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984 |
0.92 |
|
1989 |
Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984 |
0.92 |
|
1989 |
Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487a0 |
0.92 |
|
1989 |
Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487a0 |
0.92 |
|
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