Gary P. Schroth, Ph.D. - Publications

Affiliations: 
Illumina, San Diego, CA, United States 
Area:
Next-Generation DNA Sequencing

116 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Beutler AS, Kulkarni AA, Kanwar R, Klein CJ, Therneau TM, Qin R, Banck MS, Boora GK, Ruddy KJ, Wu Y, Smalley RL, Cunningham JM, Le-Lindqwister NA, Beyerlein P, Schroth GP, et al. Sequencing of Charcot-Marie-Tooth disease genes in a toxic polyneuropathy. Annals of Neurology. 76: 727-37. PMID 25164601 DOI: 10.1002/ana.24265  0.92
2014 . A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nature Biotechnology. 32: 903-14. PMID 25150838 DOI: 10.1038/nbt.2957  0.92
2014 Chandler JA, Thongsripong P, Green A, Kittayapong P, Wilcox BA, Schroth GP, Kapan DD, Bennett SN. Metagenomic shotgun sequencing of a Bunyavirus in wild-caught Aedes aegypti from Thailand informs the evolutionary and genomic history of the Phleboviruses. Virology. 464: 312-9. PMID 25108381 DOI: 10.1016/j.virol.2014.06.036  0.92
2014 Mestdagh P, Hartmann N, Baeriswyl L, Andreasen D, Bernard N, Chen C, Cheo D, D'Andrade P, DeMayo M, Dennis L, Derveaux S, Feng Y, Fulmer-Smentek S, Gerstmayer B, Gouffon J, ... ... Schroth G, et al. Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study. Nature Methods. 11: 809-15. PMID 24973947 DOI: 10.1038/nmeth.3014  0.92
2014 Josset L, Tchitchek N, Gralinski LE, Ferris MT, Eisfeld AJ, Green RR, Thomas MJ, Tisoncik-Go J, Schroth GP, Kawaoka Y, Manuel de Villena FP, Baric RS, Heise MT, Peng X, Katze MG. Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts. Rna Biology. 11: 875-90. PMID 24922324 DOI: 10.4161/rna.29442  0.92
2014 Xiong H, Morrison J, Ferris MT, Gralinski LE, Whitmore AC, Green R, Thomas MJ, Tisoncik-Go J, Schroth GP, Pardo-Manuel de Villena F, Baric RS, Heise MT, Peng X, Katze MG. Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression. G3 (Bethesda, Md.). 4: 1429-44. PMID 24902603 DOI: 10.1534/g3.114.011759  0.92
2014 Tome JM, Ozer A, Pagano JM, Gheba D, Schroth GP, Lis JT. Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling. Nature Methods. 11: 683-8. PMID 24809628 DOI: 10.1038/nmeth.2970  0.92
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... Schroth GP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/gr.143891.112  0.92
2014 Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Research. 24: 496-510. PMID 24299736 DOI: 10.1101/gr.161034.113  0.92
2014 Mestdagh P, Hartmann N, Baeriswyl L, Andreasen D, Bernard N, Chen C, Cheo D, D'Andrade P, DeMayo M, Dennis L, Derveaux S, Feng Y, Fulmer-Smentek S, Gerstmayer B, Gouffon J, ... ... Schroth G, et al. Corrigendum: Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study (Nature Methods (2014) 11, (809-815)) Nature Methods. 11: 971. DOI: 10.1038/nmeth0914-971b  0.92
2013 Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S. Cohesin-mediated interactions organize chromosomal domain architecture Embo Journal. 32: 3119-3129. PMID 24185899 DOI: 10.1038/emboj.2013.237  0.92
2013 Rienhoff HY, Yeo CY, Morissette R, Khrebtukova I, Melnick J, Luo S, Leng N, Kim YJ, Schroth G, Westwick J, Vogel H, McDonnell N, Hall JG, Whitman M. A mutation in TGFB3 associated with a syndrome of low muscle mass, growth retardation, distal arthrogryposis and clinical features overlapping with Marfan and Loeys-Dietz syndrome. American Journal of Medical Genetics. Part A. 161: 2040-6. PMID 23824657 DOI: 10.1002/ajmg.a.36056  0.92
2013 Dinwiddie DL, Kingsmore SF, Caracciolo S, Rossi G, Moratto D, Mazza C, Sabelli C, Bacchetta R, Passerini L, Magri C, Bell CJ, Miller NA, Hateley SL, Saunders CJ, Zhang L, ... Schroth GP, et al. Combined DOCK8 and CLEC7A mutations causing immunodeficiency in 3 brothers with diarrhea, eczema, and infections. The Journal of Allergy and Clinical Immunology. 131: 594-7.e1-3. PMID 23374272 DOI: 10.1016/j.jaci.2012.10.062  0.92
2013 Pipes L, Li S, Bozinoski M, Palermo R, Peng X, Blood P, Kelly S, Weiss JM, Thierry-Mieg J, Thierry-Mieg D, Zumbo P, Chen R, Schroth GP, Mason CE, Katze MG. The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics. Nucleic Acids Research. 41: D906-14. PMID 23203872 DOI: 10.1093/nar/gks1268  0.92
2012 Cann GM, Gulzar ZG, Cooper S, Li R, Luo S, Tat M, Stuart S, Schroth G, Srinivas S, Ronaghi M, Brooks JD, Talasaz AH. mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer. Plos One. 7: e49144. PMID 23145101 DOI: 10.1371/journal.pone.0049144  0.92
2012 Qiu S, Luo S, Evgrafov O, Li R, Schroth GP, Levitt P, Knowles JA, Wang K. Single-neuron RNA-Seq: technical feasibility and reproducibility. Frontiers in Genetics. 3: 124. PMID 22934102 DOI: 10.3389/fgene.2012.00124  0.92
2012 Wang ET, Cody NA, Jog S, Biancolella M, Wang TT, Treacy DJ, Luo S, Schroth GP, Housman DE, Reddy S, Lécuyer E, Burge CB. Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins. Cell. 150: 710-24. PMID 22901804 DOI: 10.1016/j.cell.2012.06.041  0.92
2012 Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells Nature Biotechnology. 30: 777-782. PMID 22820318 DOI: 10.1038/nbt.2282  0.92
2012 Hardt O, Wild S, Oerlecke I, Hofmann K, Luo S, Wiencek Y, Kantelhardt E, Vess C, Smith GP, Schroth GP, Bosio A, Dittmer J. Highly sensitive profiling of CD44+/CD24- breast cancer stem cells by combining global mRNA amplification and next generation sequencing: evidence for a hyperactive PI3K pathway. Cancer Letters. 325: 165-74. PMID 22771536 DOI: 10.1016/j.canlet.2012.06.010  0.92
2012 Akalin A, Garrett-Bakelman FE, Kormaksson M, Busuttil J, Zhang L, Khrebtukova I, Milne TA, Huang Y, Biswas D, Hess JL, Allis CD, Roeder RG, Valk PJ, Löwenberg B, Delwel R, ... ... Schroth GP, et al. Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia. Plos Genetics. 8: e1002781. PMID 22737091 DOI: 10.1371/journal.pgen.1002781  0.92
2012 Asmann YW, Necela BM, Kalari KR, Hossain A, Baker TR, Carr JM, Davis C, Getz JE, Hostetter G, Li X, McLaughlin SA, Radisky DC, Schroth GP, Cunliffe HE, Perez EA, et al. Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer. Cancer Research. 72: 1921-8. PMID 22496456 DOI: 10.1158/0008-5472.CAN-11-3142  0.92
2012 Badolato R, Prandini A, Caracciolo S, Colombo F, Tabellini G, Giacomelli M, Cantarini ME, Pession A, Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Saunders CJ, Zhang L, Schroth GP, et al. Exome sequencing reveals a pallidin mutation in a Hermansky-Pudlak-like primary immunodeficiency syndrome. Blood. 119: 3185-7. PMID 22461475 DOI: 10.1182/blood-2012-01-404350  0.92
2012 Hartung T, Zhang L, Kanwar R, Khrebtukova I, Reinhardt M, Wang C, Therneau TM, Banck MS, Schroth GP, Beutler AS. Diametrically opposite methylome-transcriptome relationships in high-and low-CpG promoter genes in postmitotic neural rat tissue Epigenetics. 7: 421-428. PMID 22415013 DOI: 10.4161/epi.19565  0.92
2012 Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, ... ... Schroth G, et al. Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell. 148: 780-91. PMID 22341448 DOI: 10.1016/j.cell.2011.11.065  0.92
2012 Luo S, Smith GP, Khrebtukova I, Schroth GP. Total RNA-seq: Complete analysis of the transcriptome using illumina sequencing-by-synthesis sequencing Tag-Based Next Generation Sequencing. 367-381. DOI: 10.1002/9783527644582.ch23  0.92
2011 Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S, Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C, Kawaoka Y, Baric RS, et al. Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. Mbio. 2. PMID 22086488 DOI: 10.1128/mBio.00198-11  0.92
2011 Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S, Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C, Kawaoka Y, Baric RS, et al. Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection. Mbio. 2. PMID 22086488 DOI: 10.1128/mBio.00198-11  0.92
2011 Martin DI, Singer M, Dhahbi J, Mao G, Zhang L, Schroth GP, Pachter L, Boffelli D. Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states. Genome Research. 21: 2049-57. PMID 21908772 DOI: 10.1101/gr.122721.111  0.92
2011 Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J. Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq. Nucleic Acids Research. 39: e140. PMID 21880599 DOI: 10.1093/nar/gkr617  0.92
2011 Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/journal.pone.0023501  0.92
2011 Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/journal.pone.0023501  0.92
2011 Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R. High density DNA methylation array with single CpG site resolution. Genomics. 98: 288-95. PMID 21839163 DOI: 10.1016/j.ygeno.2011.07.007  0.92
2011 Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R. High density DNA methylation array with single CpG site resolution. Genomics. 98: 288-95. PMID 21839163 DOI: 10.1016/j.ygeno.2011.07.007  0.92
2011 Lee EJ, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi JH, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Research. 39: e127. PMID 21785137 DOI: 10.1093/nar/gkr598  0.92
2011 Lee EJ, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi JH, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Research. 39: e127. PMID 21785137 DOI: 10.1093/nar/gkr598  0.92
2011 Hafner M, Renwick N, Brown M, Mihailovi? A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T. RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries. Rna (New York, N.Y.). 17: 1697-712. PMID 21775473 DOI: 10.1261/rna.2799511  0.92
2011 Nutiu R, Friedman RC, Luo S, Khrebtukova I, Silva D, Li R, Zhang L, Schroth GP, Burge CB. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument. Nature Biotechnology. 29: 659-64. PMID 21706015 DOI: 10.1038/nbt.1882  0.92
2011 Nutiu R, Friedman RC, Luo S, Khrebtukova I, Silva D, Li R, Zhang L, Schroth GP, Burge CB. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument. Nature Biotechnology. 29: 659-64. PMID 21706015 DOI: 10.1038/nbt.1882  0.92
2011 Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines. Nucleic Acids Research. 39: e100. PMID 21622959 DOI: 10.1093/nar/gkr362  0.92
2011 Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines. Nucleic Acids Research. 39: e100. PMID 21622959 DOI: 10.1093/nar/gkr362  0.92
2011 Sun Z, Asmann YW, Kalari KR, Bot B, Eckel-Passow JE, Baker TR, Carr JM, Khrebtukova I, Luo S, Zhang L, Schroth GP, Perez EA, Thompson EA. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing. Plos One. 6: e17490. PMID 21364760 DOI: 10.1371/journal.pone.0017490  0.92
2011 Sun Z, Asmann YW, Kalari KR, Bot B, Eckel-Passow JE, Baker TR, Carr JM, Khrebtukova I, Luo S, Zhang L, Schroth GP, Perez EA, Thompson EA. Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing. Plos One. 6: e17490. PMID 21364760 DOI: 10.1371/journal.pone.0017490  0.92
2011 Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA, Eisen MB. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Plos Biology. 9: e1000590. PMID 21346796 DOI: 10.1371/journal.pbio.1000590  0.92
2011 Lott SE, Villalta JE, Schroth GP, Luo S, Tonkin LA, Eisen MB. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Plos Biology. 9: e1000590. PMID 21346796 DOI: 10.1371/journal.pbio.1000590  0.92
2011 Feber A, Wilson GA, Zhang L, Presneau N, Idowu B, Down TA, Rakyan VK, Noon LA, Lloyd AC, Stupka E, Schiza V, Teschendorff AE, Schroth GP, Flanagan A, Beck S. Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Research. 21: 515-24. PMID 21324880 DOI: 10.1101/gr.109678.110  0.92
2011 Feber A, Wilson GA, Zhang L, Presneau N, Idowu B, Down TA, Rakyan VK, Noon LA, Lloyd AC, Stupka E, Schiza V, Teschendorff AE, Schroth GP, Flanagan A, Beck S. Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Research. 21: 515-24. PMID 21324880 DOI: 10.1101/gr.109678.110  0.92
2011 Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science (New York, N.Y.). 331: 463-7. PMID 21273488 DOI: 10.1126/science.1200387  0.92
2011 Grober OM, Mutarelli M, Giurato G, Ravo M, Cicatiello L, De Filippo MR, Ferraro L, Nassa G, Papa MF, Paris O, Tarallo R, Luo S, Schroth GP, Benes V, Weisz A. Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation. Bmc Genomics. 12: 36. PMID 21235772 DOI: 10.1186/1471-2164-12-36  0.92
2011 Grober OM, Mutarelli M, Giurato G, Ravo M, Cicatiello L, De Filippo MR, Ferraro L, Nassa G, Papa MF, Paris O, Tarallo R, Luo S, Schroth GP, Benes V, Weisz A. Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation. Bmc Genomics. 12: 36. PMID 21235772 DOI: 10.1186/1471-2164-12-36  0.92
2011 Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Ganusova EE, Mudge J, Langley RJ, Zhang L, Lee CC, Schilkey FD, Sheth V, Woodward JE, Peckham HE, Schroth GP, Kim RW, et al. Carrier testing for severe childhood recessive diseases by next-generation sequencing. Science Translational Medicine. 3: 65ra4. PMID 21228398 DOI: 10.1126/scitranslmed.3001756  0.92
2011 Bell CJ, Dinwiddie DL, Miller NA, Hateley SL, Ganusova EE, Mudge J, Langley RJ, Zhang L, Lee CC, Schilkey FD, Sheth V, Woodward JE, Peckham HE, Schroth GP, Kim RW, et al. Carrier testing for severe childhood recessive diseases by next-generation sequencing. Science Translational Medicine. 3: 65ra4. PMID 21228398 DOI: 10.1126/scitranslmed.3001756  0.92
2011 Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE. Methods in Molecular Biology (Clifton, N.J.). 687: 135-46. PMID 20967605 DOI: 10.1007/978-1-60761-944-4_9  0.92
2011 Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE. Methods in Molecular Biology (Clifton, N.J.). 687: 135-46. PMID 20967605 DOI: 10.1007/978-1-60761-944-4_9  0.92
2010 Coleman SJ, Zeng Z, Wang K, Luo S, Khrebtukova I, Mienaltowski MJ, Schroth GP, Liu J, MacLeod JN. Structural annotation of equine protein-coding genes determined by mRNA sequencing Animal Genetics. 41: 121-130. PMID 21070285 DOI: 10.1111/j.1365-2052.2010.02118.x  0.92
2010 Singer M, Boffelli D, Dhahbi J, Schönhuth A, Schroth GP, Martin DI, Pachter L. MetMap enables genome-scale Methyltyping for determining methylation states in populations. Plos Computational Biology. 6: e1000888. PMID 20856582 DOI: 10.1371/journal.pcbi.1000888  0.92
2010 Singer M, Boffelli D, Dhahbi J, Schönhuth A, Schroth GP, Martin DI, Pachter L. MetMap enables genome-scale Methyltyping for determining methylation states in populations. Plos Computational Biology. 6: e1000888. PMID 20856582 DOI: 10.1371/journal.pcbi.1000888  0.92
2010 Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. Plos One. 5: e12010. PMID 20700453 DOI: 10.1371/journal.pone.0012010  0.92
2010 Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R. High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. Plos One. 5: e12010. PMID 20700453 DOI: 10.1371/journal.pone.0012010  0.92
2010 Woodhouse SD, Narayan R, Latham S, Lee S, Antrobus R, Gangadharan B, Luo S, Schroth GP, Klenerman P, Zitzmann N. Transcriptome sequencing, microarray, and proteomic analyses reveal cellular and metabolic impact of hepatitis C virus infection in vitro Hepatology. 52: 443-453. PMID 20683944 DOI: 10.1002/hep.23733  0.92
2010 Boellmann F, Zhang L, Clewell HJ, Schroth GP, Kenyon EM, Andersen ME, Thomas RS. Genome-wide analysis of DNA methylation and gene expression changes in the mouse lung following subchronic arsenate exposure Toxicological Sciences. 117: 404-417. PMID 20667999 DOI: 10.1093/toxsci/kfq225  0.92
2010 Gregg C, Zhang J, Weissbourd B, Luo S, Schroth GP, Haig D, Dulac C. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science (New York, N.Y.). 329: 643-8. PMID 20616232 DOI: 10.1126/science.1190830  0.92
2010 Gregg C, Zhang J, Weissbourd B, Luo S, Schroth GP, Haig D, Dulac C. High-resolution analysis of parent-of-origin allelic expression in the mouse brain. Science (New York, N.Y.). 329: 643-8. PMID 20616232 DOI: 10.1126/science.1190830  0.92
2010 Hammer P, Banck MS, Amberg R, Wang C, Petznick G, Luo S, Khrebtukova I, Schroth GP, Beyerlein P, Beutler AS. mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain Genome Research. 20: 847-860. PMID 20452967 DOI: 10.1101/gr.101204.109  0.92
2010 Baranzini SE, Mudge J, van Velkinburgh JC, Khankhanian P, Khrebtukova I, Miller NA, Zhang L, Farmer AD, Bell CJ, Kim RW, May GD, Woodward JE, Caillier SJ, McElroy JP, Gomez R, ... ... Schroth GP, et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 464: 1351-6. PMID 20428171 DOI: 10.1038/nature08990  0.92
2010 Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes & Development. 24: 992-1009. PMID 20413612 DOI: 10.1101/gad.1884710  0.92
2010 Cicatiello L, Mutarelli M, Grober OMV, Paris O, Ferraro L, Ravo M, Tarallo R, Luo S, Schroth GP, Seifert M, Zinser C, Chiusano ML, Traini A, De Bortoli M, Weisz A. Estrogen receptor α controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs American Journal of Pathology. 176: 2113-2130. PMID 20348243 DOI: 10.2353/ajpath.2010.090837  0.92
2010 Filiatrault MJ, Stodghill PV, Bronstein PA, Moll S, Lindeberg M, Grills G, Schweitzer P, Wang W, Schroth GP, Luo S, Khrebtukova I, Yang Y, Thannhauser T, Butcher BG, Cartinhour S, et al. Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity. Journal of Bacteriology. 192: 2359-72. PMID 20190049 DOI: 10.1128/JB.01445-09  0.92
2010 Lakdawalla A, Schroth GP. Mutation Discovery with the Illumina® Genome Analyzer The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles. 101-120. DOI: 10.1002/9783527629398.ch6  0.92
2009 Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM. Chimeric transcript discovery by paired-end transcriptome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 12353-8. PMID 19592507 DOI: 10.1073/pnas.0904720106  0.92
2009 Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Research. 19: 1044-56. PMID 19273619 DOI: 10.1101/gr.088773.108  0.92
2009 Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Research. 19: 1044-56. PMID 19273619 DOI: 10.1101/gr.088773.108  0.92
2009 German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nature Protocols. 4: 356-62. PMID 19247285 DOI: 10.1038/nprot.2009.8  0.92
2009 Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/pnas.0812841106  0.92
2008 Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, ... ... Schroth GP, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 456: 53-9. PMID 18987734 DOI: 10.1038/nature07517  0.92
2008 Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, ... ... Schroth GP, et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature. 456: 53-9. PMID 18987734 DOI: 10.1038/nature07517  0.92
2008 Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, ... ... Schroth GP, et al. Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. Plos One. 3: e3625. PMID 18985160 DOI: 10.1371/journal.pone.0003625  0.92
2008 Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, Lewis S, Beavis WD, Schilkey FD, Virk SM, Black CF, ... ... Schroth GP, et al. Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. Plos One. 3: e3625. PMID 18985160 DOI: 10.1371/journal.pone.0003625  0.92
2008 Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature. 456: 470-6. PMID 18978772 DOI: 10.1038/nature07509  0.92
2008 Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature. 456: 470-6. PMID 18978772 DOI: 10.1038/nature07509  0.92
2008 Chen J, Lozach J, Garcia EW, Barnes B, Luo S, Mikoulitch I, Zhou L, Schroth G, Fan JB. Highly sensitive and specific microRNA expression profiling using BeadArray technology Nucleic Acids Research. 36. PMID 18579563 DOI: 10.1093/nar/gkn387  0.92
2008 Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Molecular Cell. 31: 67-78. PMID 18571452 DOI: 10.1016/j.molcel.2008.06.002  0.92
2008 Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Molecular Cell. 31: 67-78. PMID 18571452 DOI: 10.1016/j.molcel.2008.06.002  0.92
2008 German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nature Biotechnology. 26: 941-6. PMID 18542052 DOI: 10.1038/nbt1417  0.92
2008 Schroth GP. mRNA analysis with next-gen sequencing Genetic Engineering and Biotechnology News. 28.  0.92
2006 Guo L, Zhang L, Sun Y, Muskhelishvili L, Blann E, Dial S, Shi L, Schroth G, Dragan YP. Differences in hepatotoxicity and gene expression profiles by anti-diabetic PPAR γ agonists on rat primary hepatocytes and human HepG2 cells Molecular Diversity. 10: 349-360. PMID 17031537 DOI: 10.1007/s11030-006-9038-0  0.92
2002 Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598  0.92
2002 Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598  0.92
1999 Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/nar/27.2.543  0.92
1999 Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/nar/27.2.543  0.92
1996 Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i  0.92
1996 Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i  0.92
1996 Brown ML, Schroth GP, Gottesfeld JM, Bazett-Jones DP. Protein and DNA requirements for the transcription factor IIIA-induced distortion of the 5 S rRNA gene promoter Journal of Molecular Biology. 262: 600-614. PMID 8876641 DOI: 10.1006/jmbi.1996.0539  0.92
1995 Yaneva J, Schroth GP, Van Holde KE, Zlatanova J. High-affinity binding sites for histone H1 in plasmid DNA Proceedings of the National Academy of Sciences of the United States of America. 92: 7060-7064. PMID 7624369 DOI: 10.1073/pnas.92.15.7060  0.92
1995 Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/pnas.92.14.6464  0.92
1995 Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/pnas.92.14.6464  0.92
1995 Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/jmbi.1995.0336  0.92
1995 Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/jmbi.1995.0336  0.92
1995 Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/nar/23.11.1977  0.92
1995 Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/nar/23.11.1977  0.92
1994 Varga-Weisz P, Zlatanova J, Leuba SH, Schroth GP, Van Holde K. Binding of histones H1 and H5 and their globular domains to four-way junction DNA Proceedings of the National Academy of Sciences of the United States of America. 91: 3525-3529. PMID 8170940  0.92
1993 Hong L, Schroth GP, Matthews HR, Yau P, Bradbury EM. Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 'tail' to DNA Journal of Biological Chemistry. 268: 305-314. PMID 8416938  0.92
1993 Schroth GP, Kagawa TF, Ho PS. Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). Biochemistry. 32: 13381-92. PMID 8257675 DOI: 10.1021/bi00212a002  0.92
1992 Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856  0.92
1992 Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856  0.92
1992 Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826  0.92
1992 Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826  0.92
1991 Schroth GP, Gottesfeld JM, Bradbury EM. TFIIIA induced DNA bending: Effect of low ionic strength electrophoresis buffer conditions Nucleic Acids Research. 19: 511-516. PMID 2011525 DOI: 10.1093/nar/19.3.511  0.92
1991 Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069  0.92
1991 Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069  0.92
1990 Schroth GP, Yau P, Imai BS, Gatewood JM, Bradbury EM. A NMR study of mobility in the histone octamer Febs Letters. 268: 117-120. PMID 2384147 DOI: 10.1016/0014-5793(90)80987-T  0.92
1990 Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113  0.92
1990 Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113  0.92
1989 Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984  0.92
1989 Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984  0.92
1989 Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487a0  0.92
1989 Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487a0  0.92
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