Seung Joong Kim, Ph.D. - Publications

Affiliations: 
2003-2008 Physics University of Illinois, Urbana, IL, United States 

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Cho C, Jang J, Kang Y, Watanabe H, Uchihashi T, Kim SJ, Kato K, Lee JY, Song JJ. Structural basis of nucleosome assembly by the Abo1 AAA+ ATPase histone chaperone. Nature Communications. 10: 5764. PMID 31848341 DOI: 10.1038/s41467-019-13743-9  0.36
2019 Jang S, Kang C, Yang HS, Jung T, Hebert H, Chung KY, Kim SJ, Hohng S, Song JJ. Structural basis of recognition and destabilization of the histone H2B ubiquitinated nucleosome by the DOT1L histone H3 Lys79 methyltransferase. Genes & Development. PMID 30923167 DOI: 10.1101/gad.323790.118  0.36
2018 Yoon J, Kim SJ, An S, Cho S, Leitner A, Jung T, Aebersold R, Hebert H, Cho US, Song JJ. Integrative structural investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding. Journal of Molecular Biology. PMID 29408485 DOI: 10.1016/J.Jmb.2018.01.015  0.36
2015 Carter L, Kim SJ, Schneidman-Duhovny D, Stöhr J, Poncet-Montange G, Weiss TM, Tsuruta H, Prusiner SB, Sali A. Prion Protein-Antibody Complexes Characterized by Chromatography-Coupled Small-Angle X-Ray Scattering. Biophysical Journal. 109: 793-805. PMID 26287631 DOI: 10.1016/j.bpj.2015.06.065  0.32
2014 Shi Y, Fernandez-Martinez J, Tjioe E, Pellarin R, Kim SJ, Williams R, Schneidman-Duhovny D, Sali A, Rout MP, Chait BT. Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex. Molecular & Cellular Proteomics : McP. 13: 2927-43. PMID 25161197 DOI: 10.1074/Mcp.M114.041673  0.32
2014 Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, et al. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Molecular & Cellular Proteomics : McP. 13: 2911-26. PMID 25139911 DOI: 10.1074/Mcp.M114.040915  0.32
2014 Bonomi M, Pellarin R, Kim SJ, Russel D, Sundin BA, Riffle M, Jaschob D, Ramsden R, Davis TN, Muller EG, Sali A. Determining protein complex structures based on a Bayesian model of in vivo Förster resonance energy transfer (FRET) data. Molecular & Cellular Proteomics : McP. 13: 2812-23. PMID 25139910 DOI: 10.1074/Mcp.M114.040824  0.32
2014 Algret R, Fernandez-Martinez J, Shi Y, Kim SJ, Pellarin R, Cimermancic P, Cochet E, Sali A, Chait BT, Rout MP, Dokudovskaya S. Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway. Molecular & Cellular Proteomics : McP. 13: 2855-70. PMID 25073740 DOI: 10.1074/Mcp.M114.039388  0.32
2014 Spill YG, Kim SJ, Schneidman-Duhovny D, Russel D, Webb B, Sali A, Nilges M. SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes. Journal of Synchrotron Radiation. 21: 203-8. PMID 24365937 DOI: 10.1107/S1600577513030117  0.32
2014 Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A. ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research. 42: D336-46. PMID 24271400 DOI: 10.1093/Nar/Gkt1144  0.32
2013 Matsumura Y, Shinjo M, Kim SJ, Okishio N, Gruebele M, Kihara H. Transient helical structure during PI3K and Fyn SH3 domain folding. The Journal of Physical Chemistry. B. 117: 4836-43. PMID 23537292 DOI: 10.1021/Jp400167S  0.32
2013 Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, et al. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure (London, England : 1993). 21: 560-71. PMID 23499021 DOI: 10.1016/J.Str.2013.02.005  0.32
2012 Schneidman-Duhovny D, Rossi A, Avila-Sakar A, Kim SJ, Velázquez-Muriel J, Strop P, Liang H, Krukenberg KA, Liao M, Kim HM, Sobhanifar S, Dötsch V, Rajpal A, Pons J, Agard DA, et al. A method for integrative structure determination of protein-protein complexes. Bioinformatics (Oxford, England). 28: 3282-9. PMID 23093611 DOI: 10.1093/Bioinformatics/Bts628  0.32
2012 Martinez-Avila O, Wu S, Kim SJ, Cheng Y, Khan F, Samudrala R, Sali A, Horst JA, Habelitz S. Self-assembly of filamentous amelogenin requires calcium and phosphate: from dimers via nanoribbons to fibrils. Biomacromolecules. 13: 3494-502. PMID 22974364 DOI: 10.1021/Bm300942C  0.32
2012 Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, et al. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 80: 2110-6. PMID 22544723 DOI: 10.1002/Prot.24102  0.32
2011 Webb B, Lasker K, Schneidman-Duhovny D, Tjioe E, Phillips J, Kim SJ, Velázquez-Muriel J, Russel D, Sali A. Modeling of proteins and their assemblies with the integrative modeling platform. Methods in Molecular Biology (Clifton, N.J.). 781: 377-97. PMID 21877292 DOI: 10.1007/978-1-61779-276-2_19  0.32
2011 Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, et al. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 79: 1672-7. PMID 21365675 DOI: 10.1002/Prot.22973  0.32
2010 Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, et al. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 78: 1992-8. PMID 20310066 DOI: 10.1002/Prot.22707  0.32
2009 Kim SJ, Matsumura Y, Dumont C, Kihara H, Gruebele M. Slowing down downhill folding: a three-probe study. Biophysical Journal. 97: 295-302. PMID 19580767 DOI: 10.1016/J.Bpj.2009.04.041  0.4
2009 Born B, Kim SJ, Ebbinghaus S, Gruebele M, Havenith M. The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin. Faraday Discussions. 141: 161-73; discussion 1. PMID 19227357 DOI: 10.1039/B804734K  0.32
2008 Kim SJ, Born B, Havenith M, Gruebele M. Real-time detection of protein-water dynamics upon protein folding by terahertz absorption spectroscopy. Angewandte Chemie (International Ed. in English). 47: 6486-9. PMID 18663705 DOI: 10.1002/Anie.200802281  0.32
2008 Kim SJ, Dumont C, Gruebele M. Simulation-based fitting of protein-protein interaction potentials to SAXS experiments. Biophysical Journal. 94: 4924-31. PMID 18326645 DOI: 10.1529/Biophysj.107.123240  0.64
2008 Ebbinghaus S, Kim SJ, Heyden M, Yu X, Gruebele M, Leitner DM, Havenith M. Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy. Journal of the American Chemical Society. 130: 2374-5. PMID 18247605 DOI: 10.1021/Ja0746520  0.36
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