Nicholas V. Hud, Ph.D. - Publications

Affiliations: 
Chemistry Georgia Institute of Technology, Atlanta, GA 
Area:
Analytical Chemistry
Website:
http://www.chemistry.gatech.edu/people/Hud/Nicholas

133 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Frenkel-Pinter M, Rajaei V, Glass JB, Hud NV, Williams LD. Water and Life: The Medium is the Message. Journal of Molecular Evolution. PMID 33427903 DOI: 10.1007/s00239-020-09978-6  0.92
2020 Alenaizan A, Barnett JL, Hud NV, Sherrill CD, Petrov AS. The proto-Nucleic Acid Builder: a software tool for constructing nucleic acid analogs. Nucleic Acids Research. PMID 33300028 DOI: 10.1093/nar/gkaa1159  0.6
2020 Anderson B, Fauche K, Karunakaran S, Yerabolu J, Hud NV, Krishnamurthy R. The Unexpected Base-pairing Behavior of Cyanuric Acid in RNA and Ribose versus Cyanuric Acid Induced Helicene Assembly of Nucleic Acids: Implications for the pre-RNA Paradigm. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33174270 DOI: 10.1002/chem.202004397  0.64
2020 Mascuch SJ, Fakhretaha-Aval S, Bowman JC, Ma MTH, Thomas G, Bommarius B, Ito C, Zhao L, Newnam GP, Matange KR, Thapa HR, Barlow B, Donegan RK, Nguyen NA, Saccuzzo EG, ... ... Hud NV, et al. A blueprint for academic labs to produce SARS-CoV-2 RT-qPCR test kits. The Journal of Biological Chemistry. PMID 32883809 DOI: 10.1074/jbc.RA120.015434  0.92
2020 Menor-Salvan C, Bouza M, Fialho DM, Burcar BT, Fernández FM, Hud NV. Prebiotic origin of pre-RNA building blocks in a urea "warm little pond" scenario. Chembiochem : a European Journal of Chemical Biology. PMID 32770593 DOI: 10.1002/cbic.202000510  0.52
2020 Mascuch SJ, Fakhretaha-Aval S, Bowman JC, Ma MTH, Thomas G, Bommarius B, Ito C, Zhao L, Newnam GP, Matange KR, Thapa HR, Barlow B, Donegan RK, Nguyen NA, Saccuzzo EG, ... ... Hud NV, et al. Buzz about RT-qPCR: An RT-qPCR formulation for SARS-CoV-2 detection using reagents produced at Georgia Institute of Technology. Medrxiv : the Preprint Server For Health Sciences. PMID 32766604 DOI: 10.1101/2020.07.29.20163949  0.92
2020 Fialho DM, Roche TP, Hud NV. Prebiotic Syntheses of Noncanonical Nucleosides and Nucleotides. Chemical Reviews. PMID 32421316 DOI: 10.1021/acs.chemrev.0c00069  0.52
2020 Lago JL, Burcar BT, Hud NV, Febrian R, Mehta C, Bracher PJ, Atlas ZD, Pasek MA. The Prebiotic Provenance of Semi-Aqueous Solvents. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. PMID 32388697 DOI: 10.1007/s11084-020-09595-9  0.4
2020 Karunakaran SC, Cafferty BJ, Jain KS, Schuster GB, Hud NV. Reversible Transformation of a Supramolecular Hydrogel by Redox Switching of Methylene Blue-A Noncovalent Chain Stopper. Acs Omega. 5: 344-349. PMID 31956781 DOI: 10.1021/acsomega.9b02785  1
2019 Hud NV, Fialho DM. RNA nucleosides built in one prebiotic pot. Science (New York, N.Y.). 366: 32-33. PMID 31604291 DOI: 10.1126/science.aaz1130  0.52
2019 Burcar B, Castañeda A, Lago J, Daniels M, Pasek M, Hud N, Orlando T, Menor-Salvan C. A Stark contrast to modern Earth: Phosphate mineral transformation and nucleoside phosphorylation in an iron and cyanide-rich Early Earth scenario. Angewandte Chemie (International Ed. in English). PMID 31460687 DOI: 10.1002/anie.201908272  0.32
2019 Frenkel-Pinter M, Haynes JW, C M, Petrov AS, Burcar BT, Krishnamurthy R, Hud NV, Leman LJ, Williams LD. Selective incorporation of proteinaceous over nonproteinaceous cationic amino acids in model prebiotic oligomerization reactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 31358633 DOI: 10.1073/pnas.1904849116  0.92
2019 He C, Lozoya-Colinas A, Gállego I, Grover MA, Hud NV. Solvent viscosity facilitates replication and ribozyme catalysis from an RNA duplex in a model prebiotic process. Nucleic Acids Research. PMID 31170298 DOI: 10.1093/nar/gkz496  0.48
2019 Karunakaran SC, Cafferty BJ, Weigert-Muñoz A, Schuster GB, Hud NV. Spontaneous Symmetry Breaking in the Formation of Supramolecular Polymers: Implications for the Origin of Biological Homochirality. Angewandte Chemie (International Ed. in English). 58: 1453-1457. PMID 30537392 DOI: 10.1002/anie.201812808  1
2018 Runnels CM, Lanier KA, Williams JK, Bowman JC, Petrov AS, Hud NV, Williams LD. Folding, Assembly, and Persistence: The Essential Nature and Origins of Biopolymers. Journal of Molecular Evolution. PMID 30456440 DOI: 10.1007/s00239-018-9876-2  0.92
2018 Bray MS, Lenz TK, Haynes JW, Bowman JC, Petrov AS, Reddi AR, Hud NV, Williams LD, Glass JB. Multiple prebiotic metals mediate translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30413624 DOI: 10.1073/pnas.1803636115  0.92
2018 McKee AD, Orlando TM, Hud NV, Bennett C, Saydjari AK, Solano M. A possible path to prebiotic peptides involving silica and hydroxy acid-mediated amide bond formation. Chembiochem : a European Journal of Chemical Biology. PMID 29959812 DOI: 10.1002/cbic.201800217  0.64
2018 Fialho DM, Clarke KC, Moore MK, Schuster GB, Krishnamurthy R, Hud NV. Glycosylation of a model proto-RNA nucleobase with non-ribose sugars: implications for the prebiotic synthesis of nucleosides. Organic & Biomolecular Chemistry. PMID 29308815 DOI: 10.1039/c7ob03017g  0.96
2017 Forsythe JG, Petrov AS, Millar WC, Yu SS, Krishnamurthy R, Grover MA, Hud NV, Fernández FM. Surveying the sequence diversity of model prebiotic peptides by mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. PMID 28847940 DOI: 10.1073/pnas.1711631114  0.64
2017 Gull M, Cafferty BJ, Hud NV, Pasek MA. Silicate-Promoted Phosphorylation of Glycerol in Non-Aqueous Solvents: A Prebiotically Plausible Route to Organophosphates. Life (Basel, Switzerland). 7. PMID 28661422 DOI: 10.3390/life7030029  1
2017 He C, Gállego I, Laughlin B, Grover MA, Hud NV. A viscous solvent enables information transfer from gene-length nucleic acids in a model prebiotic replication cycle. Nature Chemistry. 9: 318-324. PMID 28338690 DOI: 10.1038/nchem.2628  0.48
2017 Okafor CD, Lanier KA, Petrov AS, Athavale SS, Bowman JC, Hud NV, Williams LD. Iron mediates catalysis of nucleic acid processing enzymes: support for Fe(II) as a cofactor before the great oxidation event. Nucleic Acids Research. PMID 28334877 DOI: 10.1093/nar/gkx171  0.92
2016 Yu SS, Krishnamurthy R, Fernández FM, Hud NV, Schork FJ, Grover MA. Kinetics of prebiotic depsipeptide formation from the ester-amide exchange reaction. Physical Chemistry Chemical Physics : Pccp. PMID 27711571 DOI: 10.1039/c6cp05527c  0.64
2016 Gavette JV, Stoop M, Hud NV, Krishnamurthy R. RNA-DNA Chimeras in the Context of an RNA World Transition to an RNA/DNA World. Angewandte Chemie (International Ed. in English). PMID 27650222 DOI: 10.1002/anie.201607919  0.64
2016 Burcar B, Pasek M, Gull M, Cafferty BJ, Velasco F, Hud NV, Menor-Salván C. Darwin's Warm Little Pond: A One-Pot Reaction for Prebiotic Phosphorylation and the Mobilization of Phosphate from Minerals in a Urea-based Solvent. Angewandte Chemie (International Ed. in English). PMID 27532228 DOI: 10.1002/anie.201606239  1
2016 Li C, Cafferty BJ, Karunakaran SC, Schuster GB, Hud NV. Formation of supramolecular assemblies and liquid crystals by purine nucleobases and cyanuric acid in water: implications for the possible origins of RNA. Physical Chemistry Chemical Physics : Pccp. PMID 27253677 DOI: 10.1039/c6cp03047e  1
2016 Cafferty BJ, Fialho DM, Khanam J, Krishnamurthy R, Hud NV. Spontaneous formation and base pairing of plausible prebiotic nucleotides in water. Nature Communications. 7: 11328. PMID 27108699 DOI: 10.1038/ncomms11328  1
2016 Cafferty BJ, Musetti C, Kim K, Horowitz ED, Krishnamurthy R, Hud NV. Small molecule-mediated duplex formation of nucleic acids with 'incompatible' backbones. Chemical Communications (Cambridge, England). PMID 27009481 DOI: 10.1039/c6cc00779a  1
2016 Gulen B, Petrov AS, Okafor CD, Vander Wood D, O'Neill EB, Hud NV, Williams LD. Ribosomal small subunit domains radiate from a central core. Scientific Reports. 6: 20885. PMID 26876483 DOI: 10.1038/srep20885  1
2015 Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621738 DOI: 10.1073/pnas.1509761112  1
2015 Forsythe JG, Yu SS, Mamajanov I, Grover MA, Krishnamurthy R, Fernández FM, Hud NV. Ester-Mediated Amide Bond Formation Driven by Wet-Dry Cycles: A Possible Path to Polypeptides on the Prebiotic Earth. Angewandte Chemie (International Ed. in English). PMID 26201989 DOI: 10.1002/anie.201503792  1
2015 Forsythe JG, Yu SS, Mamajanov I, Grover MA, Krishnamurthy R, Fernández FM, Hud NV. Ester-Mediated Amide Bond Formation Driven by Wet-Dry Cycles: A Possible Path to Polypeptides on the Prebiotic Earth. Angewandte Chemie (International Ed. in English). PMID 26201989 DOI: 10.1002/anie.201503792  1
2015 Forsythe JG, Petrov AS, Walker CA, Allen SJ, Pellissier JS, Bush MF, Hud NV, Fernández FM. Collision cross section calibrants for negative ion mode traveling wave ion mobility-mass spectrometry. The Analyst. PMID 26148962 DOI: 10.1039/c5an00946d  1
2015 Gállego I, Grover MA, Hud NV. Folding and imaging of DNA nanostructures in anhydrous and hydrated deep-eutectic solvents. Angewandte Chemie (International Ed. in English). 54: 6765-9. PMID 25900011 DOI: 10.1002/anie.201412354  1
2015 Bowman JC, Hud NV, Williams LD. The ribosome challenge to the RNA world. Journal of Molecular Evolution. 80: 143-61. PMID 25739364 DOI: 10.1007/s00239-015-9669-9  1
2015 Cafferty BJ, Hud NV. Was a Pyrimidine-Pyrimidine Base Pair the Ancestor of Watson-Crick Base Pairs? Insights from a Systematic Approach to the Origin of RNA Israel Journal of Chemistry. DOI: 10.1002/ijch.201400206  1
2015 Cafferty BJ, Hud NV. Was a Pyrimidine-Pyrimidine Base Pair the Ancestor of Watson-Crick Base Pairs? Insights from a Systematic Approach to the Origin of RNA Israel Journal of Chemistry. DOI: 10.1002/ijch.201400206  1
2014 Cafferty BJ, Hud NV. Abiotic synthesis of RNA in water: a common goal of prebiotic chemistry and bottom-up synthetic biology. Current Opinion in Chemical Biology. 22: 146-57. PMID 25438801 DOI: 10.1016/j.cbpa.2014.09.015  1
2014 Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Evolution of the ribosome at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 10251-6. PMID 24982194 DOI: 10.1073/pnas.1407205111  1
2014 Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD. Secondary structures of rRNAs from all three domains of life. Plos One. 9: e88222. PMID 24505437 DOI: 10.1371/journal.pone.0088222  1
2014 Portella G, Germann MW, Hud NV, Orozco M. MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents. Journal of the American Chemical Society. 136: 3075-86. PMID 24490755 DOI: 10.1021/ja410698u  1
2014 Chen MC, Cafferty BJ, Mamajanov I, Gállego I, Khanam J, Krishnamurthy R, Hud NV. Spontaneous prebiotic formation of a β-ribofuranoside that self-assembles with a complementary heterocycle. Journal of the American Chemical Society. 136: 5640-6. PMID 24328232 DOI: 10.1021/ja410124v  1
2014 Cafferty BJ, Avirah RR, Schuster GB, Hud NV. Ultra-sensitive pH control of supramolecular polymers and hydrogels: PKa matching of biomimetic monomers Chemical Science. 5: 4681-4686. DOI: 10.1039/c4sc02182g  1
2014 Cafferty BJ, Avirah RR, Schuster GB, Hud NV. Ultra-sensitive pH control of supramolecular polymers and hydrogels: PKa matching of biomimetic monomers Chemical Science. 5: 4681-4686. DOI: 10.1039/c4sc02182g  1
2014 Mamajanov I, Macdonald PJ, Ying J, Duncanson DM, Dowdy GR, Walker CA, Engelhart AE, Fernández FM, Grover MA, Hud NV, Schork FJ. Ester formation and hydrolysis during wet-dry cycles: Generation of far-from-equilibrium polymers in a model prebiotic reaction Macromolecules. 47: 1334-1343. DOI: 10.1021/ma402256d  1
2014 Mamajanov I, Macdonald PJ, Ying J, Duncanson DM, Dowdy GR, Walker CA, Engelhart AE, Fernández FM, Grover MA, Hud NV, Schork FJ. Ester formation and hydrolysis during wet-dry cycles: Generation of far-from-equilibrium polymers in a model prebiotic reaction Macromolecules. 47: 1334-1343. DOI: 10.1021/ma402256d  1
2014 He C, Gállego I, Laughlin B, Hud N, Grover M. The effects of viscosity on nucleic acid assembly: A possible solution to the strand inhibition problem Engineering Sciences and Fundamentals 2014 - Core Programming Area At the 2014 Aiche Annual Meeting. 2: 1162.  1
2013 Petrov AS, Bernier CR, Hershkovits E, Xue Y, Waterbury CC, Hsiao C, Stepanov VG, Gaucher EA, Grover MA, Harvey SC, Hud NV, Wartell RM, Fox GE, Williams LD. Secondary structure and domain architecture of the 23S and 5S rRNAs. Nucleic Acids Research. 41: 7522-35. PMID 23771137 DOI: 10.1093/nar/gkt513  1
2013 Hsiao C, Chou IC, Okafor CD, Bowman JC, O'Neill EB, Athavale SS, Petrov AS, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA with iron(II) as a cofactor catalyses electron transfer. Nature Chemistry. 5: 525-8. PMID 23695635 DOI: 10.1038/nchem.1649  1
2013 Hud NV, Cafferty BJ, Krishnamurthy R, Williams LD. The origin of RNA and "my grandfather's axe". Chemistry & Biology. 20: 466-74. PMID 23601635 DOI: 10.1016/j.chembiol.2013.03.012  1
2013 Cafferty BJ, Gállego I, Chen MC, Farley KI, Eritja R, Hud NV. Efficient self-assembly in water of long noncovalent polymers by nucleobase analogues. Journal of the American Chemical Society. 135: 2447-50. PMID 23394182 DOI: 10.1021/ja312155v  1
2013 Hsiao C, Lenz TK, Peters JK, Fang PY, Schneider DM, Anderson EJ, Preeprem T, Bowman JC, O'Neill EB, Lie L, Athavale SS, Gossett JJ, Trippe C, Murray J, Petrov AS, ... ... Hud NV, et al. Molecular paleontology: a biochemical model of the ancestral ribosome. Nucleic Acids Research. 41: 3373-85. PMID 23355613 DOI: 10.1093/nar/gkt023  1
2013 Athavale SS, Gossett JJ, Bowman JC, Hud NV, Williams LD, Harvey SC. In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus. Plos One. 8: e54384. PMID 23349871 DOI: 10.1371/journal.pone.0054384  1
2013 Parker TM, Hohenstein EG, Parrish RM, Hud NV, Sherrill CD. Quantum-mechanical analysis of the energetic contributions to Ï€ stacking in nucleic acids versus rise, twist, and slide. Journal of the American Chemical Society. 135: 1306-16. PMID 23265256 DOI: 10.1021/ja3063309  1
2013 Kuruvilla E, Schuster GB, Hud NV. Enhanced nonenzymatic ligation of homopurine miniduplexes: support for greater base stacking in a pre-RNA world. Chembiochem : a European Journal of Chemical Biology. 14: 45-8. PMID 23225671 DOI: 10.1002/cbic.201200601  1
2012 Petrov AS, Bernier CR, Hsiao C, Okafor CD, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC, Williams LD. RNA-magnesium-protein interactions in large ribosomal subunit. The Journal of Physical Chemistry. B. 116: 8113-20. PMID 22712611 DOI: 10.1021/jp304723w  1
2012 Athavale SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA folding and catalysis mediated by iron (II). Plos One. 7: e38024. PMID 22701543 DOI: 10.1371/journal.pone.0038024  1
2012 Lannan FM, Mamajanov I, Hud NV. Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory. Journal of the American Chemical Society. 134: 15324-30. PMID 22651378 DOI: 10.1021/ja303499m  1
2012 Bowman JC, Lenz TK, Hud NV, Williams LD. Cations in charge: magnesium ions in RNA folding and catalysis. Current Opinion in Structural Biology. 22: 262-72. PMID 22595008 DOI: 10.1016/j.sbi.2012.04.006  1
2012 Engelhart AE, Cafferty BJ, Okafor CD, Chen MC, Williams LD, Lynn DG, Hud NV. Nonenzymatic ligation of DNA with a reversible step and a final linkage that can be used in PCR. Chembiochem : a European Journal of Chemical Biology. 13: 1121-4. PMID 22556064 DOI: 10.1002/cbic.201200167  1
2012 Walker SI, Grover MA, Hud NV. Universal sequence replication, reversible polymerization and early functional biopolymers: a model for the initiation of prebiotic sequence evolution. Plos One. 7: e34166. PMID 22493682 DOI: 10.1371/journal.pone.0034166  1
2012 Athavale SS, Gossett JJ, Hsiao C, Bowman JC, O'Neill E, Hershkovitz E, Preeprem T, Hud NV, Wartell RM, Harvey SC, Williams LD. Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state. Rna (New York, N.Y.). 18: 752-8. PMID 22334759 DOI: 10.1261/rna.030692.111  1
2012 Maehigashi T, Hsiao C, Woods KK, Moulaei T, Hud NV, Williams LD. B-DNA structure is intrinsically polymorphic: even at the level of base pair positions. Nucleic Acids Research. 40: 3714-22. PMID 22180536 DOI: 10.1093/nar/gkr1168  1
2011 Anumukonda LN, Young A, Lynn DG, Buckley R, Warrayat A, Graves CL, Bean HD, Hud NV. Adenine Synthesis in a Model Prebiotic Reaction: Connecting Origin of Life Chemistry with Biology. Journal of Chemical Education. 88: 1698-1701. PMID 22075932 DOI: 10.1021/ed1012074  1
2011 Buckley R, Enekwa CD, Williams LD, Hud NV. Molecular recognition of Watson-Crick-like purine-purine base pairs. Chembiochem : a European Journal of Chemical Biology. 12: 2155-8. PMID 21805554 DOI: 10.1002/cbic.201100375  1
2010 Mamajanov I, Engelhart AE, Bean HD, Hud NV. DNA and RNA in anhydrous media: duplex, triplex, and G-quadruplex secondary structures in a deep eutectic solvent. Angewandte Chemie (International Ed. in English). 49: 6310-4. PMID 20623813 DOI: 10.1002/anie.201001561  1
2010 Barks HL, Buckley R, Grieves GA, Di Mauro E, Hud NV, Orlando TM. Guanine, adenine, and hypoxanthine production in UV-irradiated formamide solutions: relaxation of the requirements for prebiotic purine nucleobase formation. Chembiochem : a European Journal of Chemical Biology. 11: 1240-3. PMID 20491139 DOI: 10.1002/cbic.201000074  1
2010 Engelhart AE, Hud NV. Primitive genetic polymers. Cold Spring Harbor Perspectives in Biology. 2: a002196. PMID 20462999 DOI: 10.1101/cshperspect.a002196  1
2010 Horowitz ED, Engelhart AE, Chen MC, Quarles KA, Smith MW, Lynn DG, Hud NV. Intercalation as a means to suppress cyclization and promote polymerization of base-pairing oligonucleotides in a prebiotic world. Proceedings of the National Academy of Sciences of the United States of America. 107: 5288-93. PMID 20212163 DOI: 10.1073/pnas.0914172107  1
2010 Li X, Hernandez AF, Grover MA, Hud NV, Lynn DG. Step-growth control in template-directed polymerization Heterocycles. 82: 1477-1488. DOI: 10.3987/COM-10-S(E)99  1
2010 Li X, Hernandez AF, Grover MA, Hud NV, Lynn DG. Step-growth control in template-directed polymerization Heterocycles. 82: 1477-1488. DOI: 10.3987/COM-10-S(E)99  1
2009 Joung IS, Persil Cetinkol O, Hud NV, Cheatham TE. Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex. Nucleic Acids Research. 37: 7715-27. PMID 19850721 DOI: 10.1093/nar/gkp730  1
2009 Sheng Y, Bean HD, Mamajanov I, Hud NV, Leszczynski J. Comprehensive investigation of the energetics of pyrimidine nucleoside formation in a model prebiotic reaction. Journal of the American Chemical Society. 131: 16088-95. PMID 19839590 DOI: 10.1021/ja900807m  1
2009 Hud NV. Mineral surfaces: a mixed blessing for the RNA world? Astrobiology. 9: 253-5; discussion 25. PMID 19371165 DOI: 10.1089/ast.2008.0928  1
2009 Engelhart AE, Morton TH, Hud NV. Evidence of strong hydrogen bonding by 8-aminoguanine. Chemical Communications (Cambridge, England). 647-9. PMID 19322409 DOI: 10.1039/b818409g  1
2009 Horowitz ED, Lilavivat S, Holladay BW, Germann MW, Hud NV. Solution structure and thermodynamics of 2',5' RNA intercalation. Journal of the American Chemical Society. 131: 5831-8. PMID 19309071 DOI: 10.1021/ja810068e  1
2009 Sarkar T, Petrov AS, Vitko JR, Santai CT, Harvey SC, Mukerji I, Hud NV. Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin. Biochemistry. 48: 667-75. PMID 19132923 DOI: 10.1021/bi8019965  1
2009 Tsai AG, Engelhart AE, Hatmal MM, Houston SI, Hud NV, Haworth IS, Lieber MR. Conformational variants of duplex DNA correlated with cytosine-rich chromosomal fragile sites. The Journal of Biological Chemistry. 284: 7157-64. PMID 19106104 DOI: 10.1074/jbc.M806866200  1
2009 Cetinkol OP, Hud NV. Molecular recognition of poly(A) by small ligands: an alternative method of analysis reveals nanomolar, cooperative and shape-selective binding. Nucleic Acids Research. 37: 611-21. PMID 19073699 DOI: 10.1093/nar/gkn977  1
2009 Bean HD, Lynn DG, Hud NV. Self-assembly and the origin of the first RNA-like polymers Acs Symposium Series. 1025: 109-132. DOI: 10.1021/bk-2009-1025.ch006  1
2009 Bean HD, Lynn DG, Hud NV. Self-assembly and the origin of the first RNA-like polymers Acs Symposium Series. 1025: 109-132. DOI: 10.1021/bk-2009-1025.ch006  1
2008 Cetinkol OP, Engelhart AE, Nanjunda RK, Wilson WD, Hud NV. Submicromolar, selective G-quadruplex ligands from one pot: thermodynamic and structural studies of human telomeric DNA binding by azacyanines. Chembiochem : a European Journal of Chemical Biology. 9: 1889-92. PMID 18600816 DOI: 10.1002/cbic.200800234  1
2007 Persil O, Hud NV. Harnessing DNA intercalation. Trends in Biotechnology. 25: 433-6. PMID 17825446 DOI: 10.1016/j.tibtech.2007.08.003  1
2007 Bean HD, Sheng Y, Collins JP, Anet FA, Leszczynski J, Hud NV. Formation of a beta-pyrimidine nucleoside by a free pyrimidine base and ribose in a plausible prebiotic reaction. Journal of the American Chemical Society. 129: 9556-7. PMID 17629276 DOI: 10.1021/ja072781a  1
2007 Hud NV, Jain SS, Li X, Lynn DG. Addressing the problems of base pairing and strand cyclization in template-directed synthesis: a case for the utility and necessity of 'molecular midwives' and reversible backbone linkages for the origin of proto-RNA. Chemistry & Biodiversity. 4: 768-83. PMID 17443888 DOI: 10.1002/cbdv.200790063  1
2007 Podbevsek P, Hud NV, Plavec J. NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution. Nucleic Acids Research. 35: 2554-63. PMID 17412708 DOI: 10.1093/nar/gkm138  1
2007 Hud NV, Morton TH. DFT energy surfaces for aminopurine homodimers and their conjugate acid ions. The Journal of Physical Chemistry. A. 111: 3369-77. PMID 17411017 DOI: 10.1021/jp065786n  1
2007 Sarkar T, Vitoc I, Mukerji I, Hud NV. Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines. Nucleic Acids Research. 35: 951-61. PMID 17259223 DOI: 10.1093/nar/gkl1093  1
2006 Horowitz ED, Hud NV. Ethidium and proflavine binding to a 2',5'-linked RNA duplex. Journal of the American Chemical Society. 128: 15380-1. PMID 17131997 DOI: 10.1021/ja065339l  1
2006 Vilfan ID, Conwell CC, Sarkar T, Hud NV. Time study of DNA condensate morphology: implications regarding the nucleation, growth, and equilibrium populations of toroids and rods. Biochemistry. 45: 8174-83. PMID 16800642 DOI: 10.1021/bi060396c  1
2006 Bean HD, Anet FA, Gould IR, Hud NV. Glyoxylate as a backbone linkage for a prebiotic ancestor of RNA. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 36: 39-63. PMID 16372197 DOI: 10.1007/s11084-005-2082-4  0.68
2006 Donohue M, Wei W, Wu J, Zawia NH, Hud N, De Jesus V, Schmechel D, Hettick JM, Beezhold DH, Vesper S. Characterization of nigerlysin, hemolysin produced by Aspergillus niger, and effect on mouse neuronal cells in vitro. Toxicology. 219: 150-5. PMID 16338047 DOI: 10.1016/j.tox.2005.11.013  1
2005 Hud NV, Vilfan ID. Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size. Annual Review of Biophysics and Biomolecular Structure. 34: 295-318. PMID 15869392 DOI: 10.1146/annurev.biophys.34.040204.144500  1
2005 Sarkar T, Conwell CC, Harvey LC, Santai CT, Hud NV. Condensation of oligonucleotides assembled into nicked and gapped duplexes: potential structures for oligonucleotide delivery. Nucleic Acids Research. 33: 143-51. PMID 15640449 DOI: 10.1093/nar/gki156  1
2004 Hud NV, Lynn DG. From life's origins to a synthetic biology. Current Opinion in Chemical Biology. 8: 627-8. PMID 15556406 DOI: 10.1016/j.cbpa.2004.10.008  1
2004 Persil O, Santai CT, Jain SS, Hud NV. Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding. Journal of the American Chemical Society. 126: 8644-5. PMID 15250704 DOI: 10.1021/ja0492891  1
2004 Conwell CC, Hud NV. Evidence that both kinetic and thermodynamic factors govern DNA toroid dimensions: effects of magnesium(II) on DNA condensation by hexammine cobalt(III). Biochemistry. 43: 5380-7. PMID 15122904 DOI: 10.1021/bi049872u  1
2004 Petty JT, Zheng J, Hud NV, Dickson RM. DNA-templated Ag nanocluster formation. Journal of the American Chemical Society. 126: 5207-12. PMID 15099104 DOI: 10.1021/ja031931o  1
2004 Jain SS, Anet FA, Stahle CJ, Hud NV. Enzymatic behavior by intercalating molecules in a template-directed ligation reaction. Angewandte Chemie (International Ed. in English). 43: 2004-8. PMID 15065286 DOI: 10.1002/anie.200353155  1
2004 Vilfan ID, Conwell CC, Hud NV. Formation of native-like mammalian sperm cell chromatin with folded bull protamine. The Journal of Biological Chemistry. 279: 20088-95. PMID 14990583 DOI: 10.1074/jbc.M312777200  1
2003 Jain SS, Polak M, Hud NV. Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation. Nucleic Acids Research. 31: 4608-15. PMID 12888521 DOI: 10.1093/nar/gkg648  1
2003 Conwell CC, Vilfan ID, Hud NV. Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength. Proceedings of the National Academy of Sciences of the United States of America. 100: 9296-301. PMID 12871999 DOI: 10.1073/pnas.1533135100  1
2003 Hud NV, Plavec J. A unified model for the origin of DNA sequence-directed curvature. Biopolymers. 69: 144-58. PMID 12717729 DOI: 10.1002/bip.10364  1
2003 Coulberson AL, Hud NV, LeDoux JM, Vilfan ID, Prausnitz MR. Gene packaging with lipids, peptides and viruses inhibits transfection by electroporation in vitro. Journal of Controlled Release : Official Journal of the Controlled Release Society. 86: 361-70. PMID 12526831 DOI: 10.1016/S0168-3659(02)00417-0  1
2003 Conwell CC, Hud NV. MgCl2 Enhances Cluster Formation by Nanoscale Toroidal DNA Condensates Journal of Cluster Science. 14: 115-122. DOI: 10.1023/A:1024837520146  1
2003 Conwell CC, Hud NV. MgCl2 Enhances Cluster Formation by Nanoscale Toroidal DNA Condensates Journal of Cluster Science. 14: 115-122. DOI: 10.1023/A:1024837520146  1
2002 Hud NV, Feigon J. Characterization of divalent cation localization in the minor groove of the A(n)T(n) and T(n)A(n) DNA sequence elements by (1)H NMR spectroscopy and manganese(II). Biochemistry. 41: 9900-10. PMID 12146955 DOI: 10.1021/bi020159j  1
2002 Crnugelj M, Hud NV, Plavec J. The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold. Journal of Molecular Biology. 320: 911-24. PMID 12126614 DOI: 10.1016/S0022-2836(02)00569-7  1
2002 Polak M, Hud NV. Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne. Nucleic Acids Research. 30: 983-92. PMID 11842110  1
2001 Hud NV, Downing KH. Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids. Proceedings of the National Academy of Sciences of the United States of America. 98: 14925-30. PMID 11734630 DOI: 10.1073/pnas.261560398  1
2001 Feigon J, Butcher SE, Finger LD, Hud NV. Solution nuclear magnetic resonance probing of cation binding sites on nucleic acids. Methods in Enzymology. 338: 400-20. PMID 11460560 DOI: 10.1016/S0076-6879(02)38230-2  1
2001 Hud NV, Polak M. DNA-cation interactions: The major and minor grooves are flexible ionophores. Current Opinion in Structural Biology. 11: 293-301. PMID 11406377 DOI: 10.1016/S0959-440X(00)00205-0  1
2000 Hud NV, Anet FA. Intercalation-mediated synthesis and replication: a new approach to the origin of life. Journal of Theoretical Biology. 205: 543-62. PMID 10931751 DOI: 10.1006/jtbi.2000.2084  1
2000 Altschuler EL, Hud NV, Mazrimas JA, Rupp B. Structure of polyglutamine. Febs Letters. 472: 166-8. PMID 10781826 DOI: 10.1016/S0014-5793(00)01381-8  1
2000 Rovnyak D, Baldus M, Wu G, Hud NV, Feigon J, Griffin RG. Localization of 23Na+ in a DNA quadruplex by high-field solid-state NMR Journal of the American Chemical Society. 122: 11423-11429. DOI: 10.1021/ja001022o  1
2000 Rovnyak D, Baldus M, Wu G, Hud NV, Feigon J, Griffin RG. Localization of 23Na+ in a DNA quadruplex by high-field solid-state NMR Journal of the American Chemical Society. 122: 11423-11429. DOI: 10.1021/ja001022o  1
2000 Shen MR, Downing KH, Balhorn R, Hud NV. Nucleation of DNA condensation by static loops: Formation of DNA toroids with reduced dimensions Journal of the American Chemical Society. 122: 4833-4834. DOI: 10.1021/ja000200a  1
2000 Shen MR, Downing KH, Balhorn R, Hud NV. Nucleation of DNA condensation by static loops: Formation of DNA toroids with reduced dimensions Journal of the American Chemical Society. 122: 4833-4834. DOI: 10.1021/ja000200a  0.52
1999 Schultze P, Hud NV, Smith FW, Feigon J. The effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4)). Nucleic Acids Research. 27: 3018-28. PMID 10454595 DOI: 10.1093/nar/27.15.3018  1
1999 Hud NV, Sklenár V, Feigon J. Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending. Journal of Molecular Biology. 286: 651-60. PMID 10024440 DOI: 10.1006/jmbi.1998.2513  1
1999 Hud NV, Schultze P, Sklenár V, Feigon J. Binding sites and dynamics of ammonium ions in a telomere repeat DNA quadruplex. Journal of Molecular Biology. 285: 233-43. PMID 9878402 DOI: 10.1006/jmbi.1998.2327  1
1998 Hud NV, Schultze P, Feigon J. Ammonium ion as an NMR probe for monovalent cation coordination sites of DNA quadruplexes [2] Journal of the American Chemical Society. 120: 6403-6404. DOI: 10.1021/ja9811039  1
1997 Altschuler EL, Hud NV, Mazrimas JA, Rupp B. Random coil conformation for extended polyglutamine stretches in aqueous soluble monomeric peptides. The Journal of Peptide Research : Official Journal of the American Peptide Society. 50: 73-5. PMID 9273890  1
1997 Hud NV, Feigon J. Localization of divalent metal ions in the minor groove of DNA A-tracts Journal of the American Chemical Society. 119: 5756-5757. DOI: 10.1021/ja9704085  1
1997 Hud NV, Feigon J. Localization of divalent metal ions in the minor groove of DNA A-tracts Journal of the American Chemical Society. 119: 5756-5757. DOI: 10.1021/ja9704085  1
1996 Hud NV, Smith FW, Anet FA, Feigon J. The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: a thermodynamic analysis by 1H NMR. Biochemistry. 35: 15383-90. PMID 8952490 DOI: 10.1021/bi9620565  1
1996 Shonnard GC, Hud NV, Mohrenweiser HW. Arginine to tryptophan substitution in the active site of a human lactate dehydrogenase variant--LDHB GUA1: postulated effects on subunit structure and catalysis. Biochimica Et Biophysica Acta. 1315: 9-14. PMID 8611651 DOI: 10.1016/0925-4439(95)00089-5  1
1995 Hud NV. Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model. Biophysical Journal. 69: 1355-62. PMID 8534805 DOI: 10.1016/S0006-3495(95)80002-0  1
1995 Hud NV, Downing KH, Balhorn R. A constant radius of curvature model for the organization of DNA in toroidal condensates. Proceedings of the National Academy of Sciences of the United States of America. 92: 3581-5. PMID 7724602  1
1994 Hud NV, Milanovich FP, Balhorn R. Evidence of novel secondary structure in DNA-bound protamine is revealed by Raman spectroscopy. Biochemistry. 33: 7528-35. PMID 8011618  1
1993 Hud NV, Allen MJ, Downing KH, Lee J, Balhorn R. Identification of the elemental packing unit of DNA in mammalian sperm cells by atomic force microscopy. Biochemical and Biophysical Research Communications. 193: 1347-54. PMID 8323555 DOI: 10.1006/bbrc.1993.1773  1
1992 Allen MJ, Hud NV, Balooch M, Tench RJ, Siekhaus WJ, Balhorn R. Tip-radius-induced artifacts in AFM images of protamine-complexed DNA fibers. Ultramicroscopy. 42: 1095-100. PMID 1413246 DOI: 10.1016/0304-3991(92)90408-C  1
1991 Myrick ML, Hud NV, Angel SM, Garvis DG. Tunneling spectroscopy on graphite defects: implications for biological STM Chemical Physics Letters. 180: 156-160. DOI: 10.1016/0009-2614(91)87133-V  1
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