| Year |
Citation |
Score |
| 2024 |
Pietz T, Gupta S, Schlaffner CN, Ahmed S, Steen H, Renard BY, Baum K. PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks. Bioinformatics (Oxford, England). 40: ii70-ii78. PMID 39230699 DOI: 10.1093/bioinformatics/btae389 |
0.335 |
|
| 2020 |
Schlaffner CN, Kahnert K, Muntel J, Chauhan R, Renard BY, Steen JA, Steen H. FLEXIQuant-LF to quantify protein modification extent in label-free proteomics data. Elife. 9. PMID 33284109 DOI: 10.7554/eLife.58783 |
0.316 |
|
| 2020 |
Zeng J, Platig J, Cheng TY, Ahmed S, Skaf Y, Potluri LP, Schwartz D, Steen H, Moody DB, Husson RN. Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility. Plos Pathogens. 16: e1008452. PMID 32255801 DOI: 10.1371/Journal.Ppat.1008452 |
0.341 |
|
| 2019 |
Kirov S, Sasson A, Zhang C, Chasalow S, Dongre A, Steen H, Stensballe A, Andersen V, Birkelund S, Bennike TB. Degradation of the extracellular matrix is part of the pathology of ulcerative colitis. Molecular Omics. 15: 67-76. PMID 30702115 DOI: 10.1039/C8Mo00239H |
0.399 |
|
| 2018 |
Bennike TB, Bellin MD, Xuan Y, Stensballe A, Møller FT, Beilman GJ, Levy O, Cruz-Monserrate Z, Andersen V, Steen J, Conwell DL, Steen H. A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation. Journal of Proteome Research. PMID 29641209 DOI: 10.1021/Acs.Jproteome.8B00111 |
0.364 |
|
| 2018 |
Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, ... ... Steen H, et al. Multisystem Analysis ofReveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface. Mbio. 9. PMID 29511081 DOI: 10.1128/Mbio.02333-17 |
0.377 |
|
| 2017 |
Meyer JG, Mukkamalla S, Steen H, Nesvizhskii AI, Gibson BW, Schilling B. PIQED: automated identification and quantification of protein modifications from DIA-MS data. Nature Methods. 14: 646-647. PMID 28661500 DOI: 10.1038/Nmeth.4334 |
0.388 |
|
| 2016 |
Froehlich JW, Kostel SA, Cho PS, Briscoe AC, Steen H, Vaezzadeh AR, Lee RS. Urinary Proteomics Yield Pathological Insights for Ureteropelvic Junction Obstruction. Molecular & Cellular Proteomics : McP. PMID 27215552 DOI: 10.1074/Mcp.M116.059386 |
0.304 |
|
| 2016 |
Chatterjee B, Makarov A, Clemmer DE, Steen H, Steen J, Saffell-Clemmer W, Moghekar AR, Rao CM, Bradshaw RA, Thakur SS. Proteomics in India: A Report on Brainstorming Meeting at Hyderabad, India. Molecular & Cellular Proteomics : McP. PMID 27114450 DOI: 10.1074/Mcp.O115.055020 |
0.321 |
|
| 2016 |
Mair W, Muntel J, Tepper K, Tang S, Biernat J, Seeley WW, Kosik KS, Mandelkow E, Steen H, Steen JA. FLEXITau: Quantifying Post-translational Modifications of Tau Protein in vitro and in Human Disease. Analytical Chemistry. PMID 26877193 DOI: 10.1021/Acs.Analchem.5B04509 |
0.316 |
|
| 2015 |
Bennike TB, Barnaby O, Steen H, Stensballe A. Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome. Data in Brief. 5: 241-7. PMID 26543887 DOI: 10.1016/J.Dib.2015.08.028 |
0.315 |
|
| 2015 |
Muntel J, Xuan Y, Berger ST, Reiter L, Bachur R, Kentsis A, Steen H. Advancing Urinary Protein Biomarker Discovery by Data-independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer. Journal of Proteome Research. PMID 26423119 DOI: 10.1021/Acs.Jproteome.5B00826 |
0.41 |
|
| 2015 |
Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H. MStern blotting - high throughput PVDF membrane-based proteomic sample preparation for 96-well plates. Molecular & Cellular Proteomics : McP. PMID 26223766 DOI: 10.1074/Mcp.O115.049650 |
0.329 |
|
| 2015 |
Dhabaria A, Cifani P, Reed C, Steen H, Kentsis A. A high-efficiency cellular extraction system for biological proteomics. Journal of Proteome Research. PMID 26153614 DOI: 10.1021/Acs.Jproteome.5B00547 |
0.365 |
|
| 2015 |
Prisic S, Hwang H, Dow A, Barnaby O, Pan TS, Lonzanida JA, Chazin WJ, Steen H, Husson RN. Zinc regulates a switch between primary and alternative S18 ribosomal proteins in Mycobacterium tuberculosis. Molecular Microbiology. 97: 263-80. PMID 25858183 DOI: 10.1111/Mmi.13022 |
0.303 |
|
| 2015 |
Winter D, Dehghani A, Steen H. Optimization of cell lysis and protein digestion protocols for protein analysis by LC-MS/MS. Methods in Molecular Biology (Clifton, N.J.). 1295: 259-73. PMID 25820728 DOI: 10.1007/978-1-4939-2550-6_20 |
0.39 |
|
| 2015 |
Lun MP, Johnson MB, Broadbelt KG, Watanabe M, Kang YJ, Chau KF, Springel MW, Malesz A, Sousa AM, Pletikos M, Adelita T, Calicchio ML, Zhang Y, Holtzman MJ, Lidov HG, ... ... Steen H, et al. Spatially heterogeneous choroid plexus transcriptomes encode positional identity and contribute to regional CSF production. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 4903-16. PMID 25810521 DOI: 10.1523/Jneurosci.3081-14.2015 |
0.303 |
|
| 2015 |
Muntel J, Boswell SA, Tang S, Ahmed S, Wapinski I, Foley G, Steen H, Springer M. Abundance-based classifier for the prediction of mass spectrometric peptide detectability upon enrichment (PPA). Molecular & Cellular Proteomics : McP. 14: 430-40. PMID 25473088 DOI: 10.1074/Mcp.M114.044321 |
0.594 |
|
| 2014 |
Prabakaran S, Hemberg M, Chauhan R, Winter D, Tweedie-Cullen RY, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA. Quantitative profiling of peptides from RNAs classified as noncoding. Nature Communications. 5: 5429. PMID 25403355 DOI: 10.1038/Ncomms6429 |
0.326 |
|
| 2014 |
Bennike T, Ayturk U, Haslauer CM, Froehlich JW, Proffen BL, Barnaby O, Birkelund S, Murray MM, Warman ML, Stensballe A, Steen H. A normative study of the synovial fluid proteome from healthy porcine knee joints. Journal of Proteome Research. 13: 4377-87. PMID 25160569 DOI: 10.1021/Pr500587X |
0.316 |
|
| 2014 |
Singh SA, Winter D, Kirchner M, Chauhan R, Ahmed S, Ozlu N, Tzur A, Steen JA, Steen H. Co-regulation proteomics reveals substrates and mechanisms of APC/C-dependent degradation. The Embo Journal. 33: 385-99. PMID 24510915 DOI: 10.1002/Embj.201385876 |
0.375 |
|
| 2014 |
Froehlich JW, Vaezzadeh AR, Kirchner M, Briscoe AC, Hofmann O, Hide W, Steen H, Lee RS. An in-depth comparison of the male pediatric and adult urinary proteomes. Biochimica Et Biophysica Acta. 1844: 1044-50. PMID 23707565 DOI: 10.1016/J.Bbapap.2013.05.008 |
0.35 |
|
| 2013 |
Paulo JA, Kadiyala V, Brizard S, Banks PA, Conwell DL, Steen H. Short Gel, Long Gradient Liquid Chromatography Tandem Mass Spectrometry to Discover Urinary Biomarkers of Chronic Pancreatitis. The Open Proteomics Journal. 6: 1-13. PMID 25346780 DOI: 10.2174/1875039701306010001 |
0.411 |
|
| 2013 |
Serang O, Cansizoglu AE, Käll L, Steen H, Steen JA. Nonparametric bayesian evaluation of differential protein quantification Journal of Proteome Research. 12: 4556-4565. PMID 24024742 DOI: 10.1021/Pr400678M |
0.369 |
|
| 2013 |
McDowell GS, Gaun A, Steen H. iFASP: combining isobaric mass tagging with filter-aided sample preparation. Journal of Proteome Research. 12: 3809-12. PMID 23692318 DOI: 10.1021/Pr400032M |
0.653 |
|
| 2013 |
Paulo JA, Kadiyala V, Banks PA, Conwell DL, Steen H. Mass Spectrometry-based Quantitative Proteomic Profiling of Human Pancreatic and Hepatic Stellate Cell Lines Genomics, Proteomics and Bioinformatics. 11: 105-113. PMID 23528454 DOI: 10.1016/J.Gpb.2013.01.009 |
0.436 |
|
| 2013 |
Paulo JA, Kadiyala V, Brizard S, Banks PA, Steen H, Conwell DL. Post-translational modifications of pancreatic fluid proteins collected via the endoscopic pancreatic function test (ePFT) Journal of Proteomics. 92: 216-227. PMID 23500127 DOI: 10.1016/J.Jprot.2013.01.033 |
0.324 |
|
| 2013 |
Paulo JA, Kadiyala V, Gaun A, Sauld JFK, Ghoulidi A, Banks PA, Steen H, Conwell DL. Analysis of endoscopic pancreatic function test (ePFT)-collected pancreatic fluid proteins precipitated via ultracentrifugation Journal of the Pancreas. 14: 176-186. PMID 23474565 DOI: 10.6092/1590-8577/1272 |
0.415 |
|
| 2013 |
Pe'er T, Lahmi R, Sharaby Y, Chorni E, Noach M, Vecsler M, Zlotorynski E, Steen H, Steen JA, Tzur A. Gas2l3, a Novel Constriction Site-Associated Protein Whose Regulation Is Mediated by the APC/CCdh1 Complex Plos One. 8. PMID 23469016 DOI: 10.1371/Journal.Pone.0057532 |
0.355 |
|
| 2013 |
Paulo JA, Urrutia R, Kadiyala V, Banks P, Conwell DL, Steen H. Cross-species analysis of nicotine-induced proteomic alterations in pancreatic cells Proteomics. 13: 1499-1512. PMID 23456891 DOI: 10.1002/Pmic.201200492 |
0.328 |
|
| 2013 |
Serang O, Froehlich JW, Muntel J, McDowell G, Steen H, Lee RS, Steen JA. SweetSEQer, simple de novo filtering and annotation of glycoconjugate mass spectra Molecular and Cellular Proteomics. 12: 1735-1740. PMID 23443135 DOI: 10.1074/Mcp.O112.025940 |
0.64 |
|
| 2013 |
Paulo JA, Gaun A, Kadiyala V, Ghoulidi A, Banks PA, Conwell DL, Steen H. Subcellular fractionation enhances proteome coverage of pancreatic duct cells Biochimica Et Biophysica Acta - Proteins and Proteomics. 1834: 791-797. PMID 23352835 DOI: 10.1016/J.Bbapap.2013.01.011 |
0.413 |
|
| 2013 |
Serang O, Paulo J, Steen H, Steen JA. A non-parametric cutout index for robust evaluation of identified proteins Molecular and Cellular Proteomics. 12: 807-812. PMID 23292186 DOI: 10.1074/Mcp.O112.022863 |
0.403 |
|
| 2013 |
Kentsis A, Shulman A, Ahmed S, Brennan E, Monuteaux MC, Lee YH, Lipsett S, Paulo JA, Dedeoglu F, Fuhlbrigge R, Bachur R, Bradwin G, Arditi M, Sundel RP, Newburger JW, ... Steen H, et al. Urine proteomics for discovery of improved diagnostic markers of Kawasaki disease Embo Molecular Medicine. 5: 210-220. PMID 23281308 DOI: 10.1002/Emmm.201201494 |
0.32 |
|
| 2012 |
Paulo JA, Kadiyala V, Banks PA, Steen H, Conwell DL. Mass Spectrometry-Based (GeLC-MS/MS) Comparative Proteomic Analysis of Endoscopically (ePFT) Collected Pancreatic and Gastroduodenal Fluids. Clinical and Translational Gastroenterology. 3: e14. PMID 23238231 DOI: 10.1038/Ctg.2012.7 |
0.336 |
|
| 2012 |
Prabakaran S, Lippens G, Steen H, Gunawardena J. Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 565-83. PMID 22899623 DOI: 10.1002/Wsbm.1185 |
0.302 |
|
| 2012 |
Huang H, Woo AJ, Waldon Z, Schindler Y, Moran TB, Zhu HH, Feng GS, Steen H, Cantor AB. A Src family kinase-Shp2 axis controls RUNX1 activity in megakaryocyte and T-lymphocyte differentiation. Genes & Development. 26: 1587-601. PMID 22759635 DOI: 10.1101/Gad.192054.112 |
0.301 |
|
| 2012 |
Yang W, Kim Y, Kim TK, Keay SK, Kim KP, Steen H, Freeman MR, Hwang D, Kim J. Integration analysis of quantitative proteomics and transcriptomics data identifies potential targets of frizzled-8 protein-related antiproliferative factor in vivo. Bju International. 110: E1138-46. PMID 22738385 DOI: 10.1111/J.1464-410X.2012.11299.X |
0.354 |
|
| 2012 |
Zhang X, Abreu JG, Yokota C, MacDonald BT, Singh S, Coburn KL, Cheong SM, Zhang MM, Ye QZ, Hang HC, Steen H, He X. Tiki1 is required for head formation via Wnt cleavage-oxidation and inactivation. Cell. 149: 1565-77. PMID 22726442 DOI: 10.1016/J.Cell.2012.04.039 |
0.331 |
|
| 2012 |
Singh S, Kirchner M, Steen JA, Steen H. A practical guide to the FLEXIQuant method. Methods in Molecular Biology (Clifton, N.J.). 893: 295-319. PMID 22665308 DOI: 10.1007/978-1-61779-885-6_19 |
0.457 |
|
| 2012 |
Renard BY, Xu B, Kirchner M, Zickmann F, Winter D, Korten S, Brattig NW, Tzur A, Hamprecht FA, Steen H. Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS). Molecular & Cellular Proteomics : McP. 11: M111.014167. PMID 22493179 DOI: 10.1074/Mcp.M111.014167 |
0.334 |
|
| 2012 |
Singh SA, Winter D, Bilimoria PM, Bonni A, Steen H, Steen JA. FLEXIQinase, a mass spectrometry-based assay, to unveil multikinase mechanisms. Nature Methods. 9: 504-8. PMID 22484849 DOI: 10.1038/Nmeth.1970 |
0.394 |
|
| 2012 |
Kentsis A, Ahmed S, Kurek K, Brennan E, Bradwin G, Steen H, Bachur R. Detection and diagnostic value of urine leucine-rich α-2-glycoprotein in children with suspected acute appendicitis Annals of Emergency Medicine. 60: 78-83. PMID 22305331 DOI: 10.1016/J.Annemergmed.2011.12.015 |
0.317 |
|
| 2012 |
Paulo JA, Kadiyala V, Lee LS, Banks PA, Conwell DL, Steen H. Proteomic analysis (GeLC-MS/MS) of ePFT-collected pancreatic fluid in chronic pancreatitis. Journal of Proteome Research. 11: 1897-912. PMID 22243521 DOI: 10.1021/Pr2011022 |
0.347 |
|
| 2012 |
Paulo JA, Lee LS, Banks PA, Steen H, Conwell DL. Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry. Pancreas. 41: 175-85. PMID 22015969 DOI: 10.1097/Mpa.0B013E318227A6B7 |
0.318 |
|
| 2012 |
Wilhelm M, Kirchner M, Steen JA, Steen H. mz5: space- and time-efficient storage of mass spectrometry data sets. Molecular & Cellular Proteomics : McP. 11: O111.011379. PMID 21960719 DOI: 10.1074/Mcp.O111.011379 |
0.313 |
|
| 2012 |
Gutierrez A, Kentsis A, Pan L, Baleydier F, Marineau J, Grebliunaite R, Kozakewich E, Reed C, Pflumio F, Poglio S, Uzan B, Clemons PA, VerPlank L, An WF, Burbank J, ... ... Steen H, et al. Phenothiazines Induce Apoptosis in T-Cell Acute Lymphoblastic Leukemia by Activating the Phosphatase Activity of the PP2A Tumor Suppressor Blood. 120: 3558-3558. DOI: 10.1182/Blood.V120.21.3558.3558 |
0.305 |
|
| 2011 |
Winter D, Steen H. Optimization of cell lysis and protein digestion protocols for the analysis of HeLa S3 cells by LC-MS/MS. Proteomics. 11: 4726-30. PMID 22002805 DOI: 10.1002/Pmic.201100162 |
0.371 |
|
| 2011 |
Paulo JA, Urrutia R, Banks PA, Conwell DL, Steen H. Proteomic analysis of a rat pancreatic stellate cell line using liquid chromatography tandem mass spectrometry (LC-MS/MS). Journal of Proteomics. 75: 708-17. PMID 21968429 DOI: 10.1016/J.Jprot.2011.09.009 |
0.445 |
|
| 2011 |
Soblik H, Younis AE, Mitreva M, Renard BY, Kirchner M, Geisinger F, Steen H, Brattig NW. Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti--identification of stage-specific proteases. Molecular & Cellular Proteomics : McP. 10: M111.010157. PMID 21964353 DOI: 10.1074/Mcp.M111.010157 |
0.307 |
|
| 2011 |
Paulo JA, Urrutia R, Banks PA, Conwell DL, Steen H. Proteomic analysis of an immortalized mouse pancreatic stellate cell line identifies differentially-expressed proteins in activated vs nonproliferating cell states. Journal of Proteome Research. 10: 4835-44. PMID 21838295 DOI: 10.1021/Pr2006318 |
0.42 |
|
| 2011 |
Dowal L, Yang W, Freeman MR, Steen H, Flaumenhaft R. Proteomic analysis of palmitoylated platelet proteins. Blood. 118: e62-73. PMID 21813449 DOI: 10.1182/Blood-2011-05-353078 |
0.382 |
|
| 2011 |
Paulo JA, Lee LS, Banks PA, Steen H, Conwell DL. Difference gel electrophoresis identifies differentially expressed proteins in endoscopically collected pancreatic fluid. Electrophoresis. 32: 1939-51. PMID 21792986 DOI: 10.1002/Elps.201100203 |
0.397 |
|
| 2011 |
Younis AE, Geisinger F, Ajonina-Ekoti I, Soblik H, Steen H, Mitreva M, Erttmann KD, Perbandt M, Liebau E, Brattig NW. Stage-specific excretory-secretory small heat shock proteins from the parasitic nematode Strongyloides ratti--putative links to host's intestinal mucosal defense system. The Febs Journal. 278: 3319-36. PMID 21762402 DOI: 10.1111/J.1742-4658.2011.08248.X |
0.351 |
|
| 2011 |
Lysaght AC, Kao SY, Paulo JA, Merchant SN, Steen H, Stankovic KM. Proteome of human perilymph. Journal of Proteome Research. 10: 3845-51. PMID 21740021 DOI: 10.1021/Pr200346Q |
0.378 |
|
| 2011 |
Prabakaran S, Everley RA, Landrieu I, Wieruszeski JM, Lippens G, Steen H, Gunawardena J. Comparative analysis of Erk phosphorylation suggests a mixed strategy for measuring phospho-form distributions. Molecular Systems Biology. 7: 482. PMID 21487401 DOI: 10.1038/Msb.2011.15 |
0.42 |
|
| 2011 |
Yang W, Chung YG, Kim Y, Kim TK, Keay SK, Zhang CO, Ji M, Hwang D, Kim KP, Steen H, Freeman MR, Kim J. Quantitative proteomics identifies a beta-catenin network as an element of the signaling response to Frizzled-8 protein-related antiproliferative factor. Molecular & Cellular Proteomics : McP. 10: M110.007492. PMID 21422242 DOI: 10.1074/Mcp.M110.007492 |
0.322 |
|
| 2011 |
Paulo JA, Lee LS, Wu B, Banks PA, Steen H, Conwell DL. Mass spectrometry-based proteomics of endoscopically collected pancreatic fluid in chronic pancreatitis research. Proteomics. Clinical Applications. 5: 109-20. PMID 21360826 DOI: 10.1002/Prca.201000098 |
0.364 |
|
| 2011 |
Paulo J, Steen H, Urrutia RA, Banks PA, Conwell D. Proteomic Analysis of Rat Pancreatic Stellate Cells (PaSCs) Using Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Gastroenterology. 140. DOI: 10.1016/S0016-5085(11)62282-8 |
0.343 |
|
| 2010 |
Paulo JA, Lee LS, Wu B, Repas K, Banks PA, Conwell DL, Steen H. Proteomic analysis of endoscopically (endoscopic pancreatic function test) collected gastroduodenal fluid using in-gel tryptic digestion followed by LC-MS/MS. Proteomics. Clinical Applications. 4: 715-25. PMID 21137089 DOI: 10.1002/Prca.201000018 |
0.334 |
|
| 2010 |
Vaezzadeh AR, Briscoe AC, Steen H, Lee RS. One-step sample concentration, purification, and albumin depletion method for urinary proteomics. Journal of Proteome Research. 9: 6082-9. PMID 20923230 DOI: 10.1021/Pr100924S |
0.326 |
|
| 2010 |
Paulo JA, Lee LS, Wu B, Repas K, Banks PA, Conwell DL, Steen H. Optimized sample preparation of endoscopic collected pancreatic fluid for SDS-PAGE analysis. Electrophoresis. 31: 2377-87. PMID 20589857 DOI: 10.1002/Elps.200900762 |
0.366 |
|
| 2010 |
Renard BY, Timm W, Kirchner M, Steen JA, Hamprecht FA, Steen H. Estimating the confidence of peptide identifications without decoy databases. Analytical Chemistry. 82: 4314-8. PMID 20455556 DOI: 10.1021/Ac902892J |
0.376 |
|
| 2010 |
Lou X, Kirchner M, Renard BY, Köthe U, Boppel S, Graf C, Lee CT, Steen JA, Steen H, Mayer MP, Hamprecht FA. Deuteration distribution estimation with improved sequence coverage for HX/MS experiments. Bioinformatics (Oxford, England). 26: 1535-41. PMID 20439256 DOI: 10.1093/Bioinformatics/Btq165 |
0.385 |
|
| 2010 |
Timm W, Ozlu N, Steen JJ, Steen H. Effect of high-accuracy precursor masses on phosphopeptide identification from MS3 spectra. Analytical Chemistry. 82: 3977-80. PMID 20426395 DOI: 10.1021/Ac100118U |
0.362 |
|
| 2010 |
Prisic S, Dankwa S, Schwartz D, Chou MF, Locasale JW, Kang CM, Bemis G, Church GM, Steen H, Husson RN. Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases. Proceedings of the National Academy of Sciences of the United States of America. 107: 7521-6. PMID 20368441 DOI: 10.1073/Pnas.0913482107 |
0.376 |
|
| 2010 |
Kirchner M, Steen JA, Hamprecht FA, Steen H. MGFp: an open Mascot Generic Format parser library implementation. Journal of Proteome Research. 9: 2762-3. PMID 20334363 DOI: 10.1021/Pr100118F |
0.309 |
|
| 2010 |
Paulo JA, Lee LS, Wu B, Repas K, Mortele KJ, Banks PA, Steen H, Conwell DL. Identification of pancreas-specific proteins in endoscopically (endoscopic pancreatic function test) collected pancreatic fluid with liquid chromatography--tandem mass spectrometry. Pancreas. 39: 889-96. PMID 20182389 DOI: 10.1097/Mpa.0B013E3181Cf16F4 |
0.362 |
|
| 2010 |
Kirchner M, Timm W, Fong P, Wangemann P, Steen H. Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments. Bioinformatics (Oxford, England). 26: 791-7. PMID 20134030 DOI: 10.1093/Bioinformatics/Btq036 |
0.398 |
|
| 2010 |
Anderson DS, Heeney MM, Roth U, Menzel C, Fleming MD, Steen H. High-throughput matrix-assisted laser desorption ionization-time-of-flight mass spectrometry method for quantification of hepcidin in human urine. Analytical Chemistry. 82: 1551-5. PMID 20102179 DOI: 10.1021/Ac902479P |
0.343 |
|
| 2010 |
Kirchner M, Renard BY, Köthe U, Pappin DJ, Hamprecht FA, Steen H, Steen JA. Computational protein profile similarity screening for quantitative mass spectrometry experiments. Bioinformatics (Oxford, England). 26: 77-83. PMID 19861354 DOI: 10.1093/Bioinformatics/Btp607 |
0.45 |
|
| 2010 |
Yang W, Di Vizio D, Kirchner M, Steen H, Freeman MR. Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes. Molecular & Cellular Proteomics : McP. 9: 54-70. PMID 19801377 DOI: 10.1074/Mcp.M800448-Mcp200 |
0.356 |
|
| 2010 |
Ozlü N, Monigatti F, Renard BY, Field CM, Steen H, Mitchison TJ, Steen JJ. Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition. Molecular & Cellular Proteomics : McP. 9: 336-50. PMID 19786723 DOI: 10.1074/Mcp.M900308-Mcp200 |
0.652 |
|
| 2010 |
Kentsis A, Lin YY, Kurek K, Calicchio M, Wang YY, Monigatti F, Campagne F, Lee R, Horwitz B, Steen H, Bachur R. Discovery and validation of urine markers of acute pediatric appendicitis using high-accuracy mass spectrometry. Annals of Emergency Medicine. 55: 62-70.e4. PMID 19556024 DOI: 10.1016/J.Annemergmed.2009.04.020 |
0.317 |
|
| 2010 |
Huang H, Waldon Z, Chan G, Zhu H, Steen H, Feng G, Neel B, Cantor A. Tyrosine Phosphorylation of Runx1 In Megakaryocytes by Src Family Kinases Blood. 116: 742-742. DOI: 10.1182/Blood.V116.21.742.742 |
0.32 |
|
| 2009 |
Kentsis A, Monigatti F, Dorff K, Campagne F, Bachur R, Steen H. Urine proteomics for profiling of human disease using high accuracy mass spectrometry. Proteomics. Clinical Applications. 3: 1052-1061. PMID 21127740 DOI: 10.1002/Prca.200900008 |
0.437 |
|
| 2009 |
Renard BY, Kirchner M, Monigatti F, Ivanov AR, Rappsilber J, Winter D, Steen JA, Hamprecht FA, Steen H. When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification. Proteomics. 9: 4978-84. PMID 19743429 DOI: 10.1002/Pmic.200900326 |
0.35 |
|
| 2009 |
Vaezzadeh AR, Steen H, Freeman MR, Lee RS. Proteomics and opportunities for clinical translation in urological disease. The Journal of Urology. 182: 835-43. PMID 19616261 DOI: 10.1016/J.Juro.2009.05.001 |
0.335 |
|
| 2009 |
Huang H, Yu M, Akie TE, Moran TB, Woo AJ, Tu N, Waldon Z, Lin YY, Steen H, Cantor AB. Differentiation-dependent interactions between RUNX-1 and FLI-1 during megakaryocyte development. Molecular and Cellular Biology. 29: 4103-15. PMID 19470763 DOI: 10.1182/Blood.V112.11.279.279 |
0.328 |
|
| 2009 |
Jorgensen P, Steen JA, Steen H, Kirschner MW. The mechanism and pattern of yolk consumption provide insight into embryonic nutrition in Xenopus. Development (Cambridge, England). 136: 1539-48. PMID 19363155 DOI: 10.1242/Dev.032425 |
0.516 |
|
| 2009 |
Singh S, Springer M, Steen J, Kirschner MW, Steen H. FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides. Journal of Proteome Research. 8: 2201-10. PMID 19344176 DOI: 10.1021/Pr800654S |
0.703 |
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| 2009 |
Wang Z, Dong G, Singh S, Steen H, Li J. A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis. Journal of Proteomics. 72: 831-5. PMID 19341826 DOI: 10.1016/J.Jprot.2009.03.006 |
0.364 |
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| 2008 |
Steen H, Stensballe A, Jensen ON. Alkaline Phosphatase Treatment of Phosphopeptides: On-Probe Dephosphorylation after MALDI-MS Analysis. Csh Protocols. 2008: pdb.prot4612. PMID 21356824 DOI: 10.1101/Pdb.Prot4612 |
0.388 |
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| 2008 |
Steen H, Stensballe A, Jensen ON. Alkaline Phosphatase Treatment of Phosphopeptides: In-Solution Dephosphorylation after MALDI-MS Analysis. Csh Protocols. 2008: pdb.prot4611. PMID 21356823 DOI: 10.1101/Pdb.Prot4611 |
0.386 |
|
| 2008 |
Steen H, Stensballe A, Jensen ON. Alkaline Phosphatase Treatment of Phosphopeptides: In-Solution Dephosphorylation prior to MALDI-MS Analysis. Csh Protocols. 2008: pdb.prot4610. PMID 21356822 DOI: 10.1101/Pdb.Prot4610 |
0.386 |
|
| 2008 |
Renard BY, Kirchner M, Steen H, Steen JA, Hamprecht FA. NITPICK: peak identification for mass spectrometry data. Bmc Bioinformatics. 9: 355. PMID 18755032 DOI: 10.1186/1471-2105-9-355 |
0.357 |
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| 2008 |
Koenig T, Menze BH, Kirchner M, Monigatti F, Parker KC, Patterson T, Steen JJ, Hamprecht FA, Steen H. Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics. Journal of Proteome Research. 7: 3708-17. PMID 18707158 DOI: 10.1021/Pr700859X |
0.321 |
|
| 2008 |
Lee RS, Monigatti F, Briscoe AC, Waldon Z, Freeman MR, Steen H. Optimizing sample handling for urinary proteomics. Journal of Proteome Research. 7: 4022-30. PMID 18662026 DOI: 10.1021/Pr800301H |
0.407 |
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| 2008 |
Adam RM, Yang W, Di Vizio D, Mukhopadhyay NK, Steen H. Rapid preparation of nuclei-depleted detergent-resistant membrane fractions suitable for proteomics analysis. Bmc Cell Biology. 9: 30. PMID 18534013 DOI: 10.1186/1471-2121-9-30 |
0.326 |
|
| 2008 |
Steen JA, Steen H, Georgi A, Parker K, Springer M, Kirchner M, Hamprecht F, Kirschner MW. Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis. Proceedings of the National Academy of Sciences of the United States of America. 105: 6069-74. PMID 18420821 DOI: 10.1073/Pnas.0709807104 |
0.628 |
|
| 2008 |
Monigatti F, Steen H. SALAMI (Spectrum ALignments using high Accuracy Mass and hIgh sensitivity data): how to make the best out of hybrid MS/MS data. Journal of Proteome Research. 7: 1984-93. PMID 18407685 DOI: 10.1021/Pr7006895 |
0.338 |
|
| 2008 |
Lee RS, Monigatti F, Lutchman M, Patterson T, Budnik B, Steen JA, Freeman MR, Steen H. Temporal variations of the postnatal rat urinary proteome as a reflection of systemic maturation. Proteomics. 8: 1097-112. PMID 18324733 DOI: 10.1002/Pmic.200700701 |
0.362 |
|
| 2008 |
Yang W, Steen H, Freeman MR. Proteomic approaches to the analysis of multiprotein signaling complexes. Proteomics. 8: 832-51. PMID 18297654 DOI: 10.1002/Pmic.200700650 |
0.331 |
|
| 2007 |
Steen H, Stensballe A, Jensen ON. Phosphopeptide Purification by IMAC with Fe(III) and Ga(III). Csh Protocols. 2007: pdb.prot4607. PMID 21356963 DOI: 10.1101/Pdb.Prot4607 |
0.308 |
|
| 2007 |
Kirchner M, Saussen B, Steen H, Steen JAJ, Hamprecht FA. amsrpm: Robust Point Matching for Retention Time Aligment of LC/MS Data with R Journal of Statistical Software. 18: 1-12. DOI: 10.18637/Jss.V018.I04 |
0.357 |
|
| 2007 |
Bensadek D, Monigatti F, Steen JAJ, Steen H. Why b, y's? Sodiation-induced tryptic peptide-like fragmentation of non-tryptic peptides International Journal of Mass Spectrometry. 268: 181-189. DOI: 10.1016/J.Ijms.2007.06.014 |
0.335 |
|
| 2006 |
Monigatti F, Hekking B, Steen H. Protein sulfation analysis--A primer. Biochimica Et Biophysica Acta. 1764: 1904-13. PMID 16952486 DOI: 10.1016/J.Bbapap.2006.07.002 |
0.407 |
|
| 2006 |
MacLellan DL, Steen H, Adam RM, Garlick M, Zurakowski D, Gygi SP, Freeman MR, Solomon KR. A quantitative proteomic analysis of growth factor-induced compositional changes in lipid rafts of human smooth muscle cells. Proteomics. 5: 4733-42. PMID 16267816 DOI: 10.1002/Pmic.200500044 |
0.345 |
|
| 2006 |
Steen H, Jebanathirajah JA, Rush J, Morrice N, Kirschner MW. Phosphorylation analysis by mass spectrometry: myths, facts, and the consequences for qualitative and quantitative measurements. Molecular & Cellular Proteomics : McP. 5: 172-81. PMID 16204703 DOI: 10.1074/Mcp.M500135-Mcp200 |
0.572 |
|
| 2005 |
Steen H, Jebanathirajah JA, Springer M, Kirschner MW. Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS. Proceedings of the National Academy of Sciences of the United States of America. 102: 3948-53. PMID 15741271 DOI: 10.1073/Pnas.0409536102 |
0.686 |
|
| 2004 |
Steen H, Mann M. The ABC's (and XYZ's) of peptide sequencing. Nature Reviews. Molecular Cell Biology. 5: 699-711. PMID 15340378 DOI: 10.1038/Nrm1468 |
0.501 |
|
| 2004 |
Argetsinger LS, Kouadio JL, Steen H, Stensballe A, Jensen ON, Carter-Su C. Autophosphorylation of JAK2 on tyrosines 221 and 570 regulates its activity. Molecular and Cellular Biology. 24: 4955-67. PMID 15143187 DOI: 10.1128/Mcb.24.11.4955-4967.2004 |
0.337 |
|
| 2004 |
Gautreau A, Ho HY, Li J, Steen H, Gygi SP, Kirschner MW. Purification and architecture of the ubiquitous Wave complex. Proceedings of the National Academy of Sciences of the United States of America. 101: 4379-83. PMID 15070726 DOI: 10.1073/Pnas.0400628101 |
0.462 |
|
| 2003 |
Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, ... ... Steen H, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research. 13: 2363-71. PMID 14525934 DOI: 10.1101/Gr.1680803 |
0.345 |
|
| 2003 |
Li J, Steen H, Gygi SP. Protein profiling with cleavable isotope-coded affinity tag (cICAT) reagents: the yeast salinity stress response. Molecular & Cellular Proteomics : McP. 2: 1198-204. PMID 14506205 DOI: 10.1074/Mcp.M300070-Mcp200 |
0.379 |
|
| 2003 |
Jebanathirajah J, Steen H, Roepstorff P. Using optimized collision energies and high resolution, high accuracy fragment ion selection to improve glycopeptide detection by precursor ion scanning. Journal of the American Society For Mass Spectrometry. 14: 777-784. PMID 12837600 DOI: 10.1016/S1044-0305(03)00263-0 |
0.388 |
|
| 2003 |
Steen H, Fernandez M, Ghaffari S, Pandey A, Mann M. Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning. Molecular & Cellular Proteomics : McP. 2: 138-45. PMID 12644574 DOI: 10.1074/Mcp.M300001-Mcp200 |
0.468 |
|
| 2003 |
Steen H, Pandey A. Proteomics goes quantitative: measuring protein abundance. Trends in Biotechnology. 20: 361-4. PMID 12175758 DOI: 10.1016/S0167-7799(02)02009-7 |
0.389 |
|
| 2003 |
Steen H, Mann M. Erratum to :A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode Journal of the American Society For Mass Spectrometry. 14: 83-83. DOI: 10.1016/S1044-0305(02)00808-5 |
0.31 |
|
| 2002 |
Andersen JS, Rappsilber J, Steen H, Pandey A, Molina H, Lund M, Podtelejnikov A, Lamond AI, Mann M. Multi-Protein Complexes Studied by Mass Spectrometry. Thescientificworldjournal. 2: 91-92. PMID 29973817 DOI: 10.1100/Tsw.2002.43 |
0.556 |
|
| 2002 |
Steen H, Mann M. Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags. Analytical Chemistry. 74: 6230-6. PMID 12510743 DOI: 10.1021/Ac025994L |
0.45 |
|
| 2002 |
Steen H, Jensen ON. Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry Mass Spectrometry Reviews. 21: 163-182. PMID 12476441 DOI: 10.1002/Mas.10024 |
0.397 |
|
| 2002 |
Steen H, Pandey A, Andersen JS, Mann M. Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Science's Stke : Signal Transduction Knowledge Environment. 2002: pl16. PMID 12381836 DOI: 10.1126/Stke.2002.154.Pl16 |
0.554 |
|
| 2002 |
Steen H, Mann M. A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode. Journal of the American Society For Mass Spectrometry. 13: 996-1003. PMID 12216740 DOI: 10.1016/S1044-0305(02)00415-4 |
0.516 |
|
| 2002 |
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics : McP. 1: 376-86. PMID 12118079 DOI: 10.1074/Mcp.M200025-Mcp200 |
0.691 |
|
| 2002 |
Mann M, Ong SE, Grønborg M, Steen H, Jensen ON, Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20: 261-8. PMID 12007495 DOI: 10.1016/S0167-7799(02)01944-3 |
0.699 |
|
| 2002 |
Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI. Directed proteomic analysis of the human nucleolus. Current Biology : Cb. 12: 1-11. PMID 11790298 DOI: 10.1016/S0960-9822(01)00650-9 |
0.523 |
|
| 2002 |
Steen H, Kuster B, Fernandez M, Pandey A, Mann M. Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. The Journal of Biological Chemistry. 277: 1031-9. PMID 11687594 DOI: 10.1074/Jbc.M109992200 |
0.522 |
|
| 2001 |
Peri S, Steen H, Pandey A. GPMAW--a software tool for analyzing proteins and peptides. Trends in Biochemical Sciences. 26: 687-9. PMID 11701329 DOI: 10.1016/S0968-0004(01)01954-5 |
0.397 |
|
| 2001 |
Steen H, Petersen J, Mann M, Jensen ON. Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: tryptophans 54 and 88 of E. coli SSB cross-link to DNA. Protein Science : a Publication of the Protein Society. 10: 1989-2001. PMID 11567090 DOI: 10.1110/Ps.07601 |
0.519 |
|
| 2001 |
Rappsilber J, Steen H, Mann M. Labile sulfogroup allows differentiation of sulfotyrosine and phosphotyrosine in peptides. Journal of Mass Spectrometry : Jms. 36: 832-3. PMID 11473407 DOI: 10.1002/Jms.195 |
0.439 |
|
| 2001 |
Steen H, Küster B, Mann M. Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning. Journal of Mass Spectrometry : Jms. 36: 782-90. PMID 11473401 DOI: 10.1002/Jms.174 |
0.484 |
|
| 2001 |
Petersson A, Steen H, Kalume DE, Caidahl K, Roepstorff P. Investigation of tyrosine nitration in proteins by mass spectrometry Journal of Mass Spectrometry. 36: 616-625. PMID 11433534 DOI: 10.1002/Jms.161 |
0.406 |
|
| 2001 |
Steen H, Küster B, Fernandez M, Pandey A, Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. Analytical Chemistry. 73: 1440-8. PMID 11321292 DOI: 10.1021/Ac001318C |
0.53 |
|
| 2001 |
Spada F, Steen H, Troedsson C, Kallesoe T, Spriet E, Mann M, Thompson EM. Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica. The Journal of Biological Chemistry. 276: 20624-32. PMID 11279070 DOI: 10.1074/Jbc.M100438200 |
0.468 |
|
| 2001 |
Steen H, Mann M. Similarity between condensed phase and gas phase chemistry: fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics. Journal of the American Society For Mass Spectrometry. 12: 228-32. PMID 11212008 DOI: 10.1016/S1044-0305(00)00219-1 |
0.476 |
|
| 2000 |
Pandey A, Fernandez MM, Steen H, Blagoev B, Nielsen MM, Roche S, Mann M, Lodish HF. Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways. The Journal of Biological Chemistry. 275: 38633-9. PMID 10993906 DOI: 10.1074/Jbc.M007849200 |
0.432 |
|
| 2000 |
Gobom J, Kraeuter K, Persson R, Steen H, Roepstorff P, Ekman R. Detection and quantification of neurotensin in human brain tissue by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Analytical Chemistry. 72: 3320-3326. PMID 10939406 DOI: 10.1021/Ac991122G |
0.366 |
|
| 1999 |
Summerfield SG, Steen H, O’Malley M, Gaskell SJ. Phenyl thiocarbamoyl and related derivatives of peptides: Edman chemistry in the gas phase International Journal of Mass Spectrometry. 188: 95-103. DOI: 10.1016/S1387-3806(98)14284-7 |
0.317 |
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