Matthias Mann - Publications

Affiliations: 
Proteomics and Signal Transduction Max Planck Institute of Biochemistry 
Website:
http://www.biochem.mpg.de/mann

132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Marinkovic M, Fuoco C, Sacco F, Cerquone Perpetuini A, Giuliani G, Micarelli E, Pavlidou T, Petrilli LL, Reggio A, Riccio F, Spada F, Vumbaca S, Zuccotti A, Castagnoli L, Mann M, et al. Fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH regulation of adipogenesis. Life Science Alliance. 2. PMID 31239312 DOI: 10.26508/lsa.201900437  0.4
2019 Wichmann C, Meier F, Virreira Winter S, Brunner AD, Cox J, Mann M. MaxQuant.Live enables global targeting of more than 25,000 peptides. Molecular & Cellular Proteomics : McP. PMID 30755466 DOI: 10.1074/mcp.TIR118.001131  0.44
2018 Meier F, Brunner AD, Koch S, Koch H, Lubeck M, Krause M, Goedecke N, Decker J, Kosinski T, Park MA, Bache N, Hoerning O, Cox J, Räther O, Mann M. Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer. Molecular & Cellular Proteomics : McP. PMID 30385480 DOI: 10.1074/mcp.TIR118.000900  0.44
2018 Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, Walther TC, Jungmann R, Zeigerer A, Borner GHH, Mann M. Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. Developmental Cell. 47: 205-221.e7. PMID 30352176 DOI: 10.1016/j.devcel.2018.09.017  0.44
2018 Iglesias-Gato D, Thysell E, Tyanova S, Crnalic S, Santos A, Lima TS, Geiger T, Cox J, Widmark A, Bergh A, Mann M, Flores-Morales A, Wikström P. The proteome of prostate cancer bone metastasis reveals heterogeneity with prognostic implications. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30042207 DOI: 10.1158/1078-0432.CCR-18-1229  0.44
2018 Virreira Winter S, Meier F, Wichmann C, Cox J, Mann M, Meissner F. EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification. Nature Methods. PMID 29915187 DOI: 10.1038/s41592-018-0037-8  0.44
2018 Meier F, Geyer PE, Virreira Winter S, Cox J, Mann M. BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes. Nature Methods. PMID 29735998 DOI: 10.1038/s41592-018-0003-5  0.44
2017 Hosp F, Gutiérrez-Ángel S, Schaefer MH, Cox J, Meissner F, Hipp MS, Hartl FU, Klein R, Dudanova I, Mann M. Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function. Cell Reports. 21: 2291-2303. PMID 29166617 DOI: 10.1016/j.celrep.2017.10.097  0.44
2017 Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, et al. Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology. 13: 949. PMID 29061669  0.44
2016 Bassani-Sternberg M, Bräunlein E, Klar R, Engleitner T, Sinitcyn P, Audehm S, Straub M, Weber J, Slotta-Huspenina J, Specht K, Martignoni ME, Werner A, Hein R, H Busch D, Peschel C, ... ... Mann M, et al. Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry. Nature Communications. 7: 13404. PMID 27869121 DOI: 10.1038/ncomms13404  0.44
2016 Sacco F, Humphrey SJ, Cox J, Mischnik M, Schulte A, Klabunde T, Schäfer M, Mann M. Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion. Nature Communications. 7: 13250. PMID 27841257 DOI: 10.1038/ncomms13250  0.44
2016 Tyanova S, Temu T, Sinitcyn P, Carlson A, Hein MY, Geiger T, Mann M, Cox J. The Perseus computational platform for comprehensive analysis of (prote)omics data. Nature Methods. PMID 27348712 DOI: 10.1038/nmeth.3901  0.44
2016 Grassl N, Kulak NA, Pichler G, Geyer PE, Jung J, Schubert S, Sinitcyn P, Cox J, Mann M. Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome. Genome Medicine. 8: 44. PMID 27102203 DOI: 10.1186/s13073-016-0293-0  0.44
2016 Temu T, Mann M, Räschle M, Cox J. Homology-driven assembly of NOn-redundant protEin Sequence Sets (NOmESS) for mass spectrometry. Bioinformatics (Oxford, England). PMID 26743511 DOI: 10.1093/bioinformatics/btv756  0.44
2016 Tyanova S, Albrechtsen R, Kronqvist P, Cox J, Mann M, Geiger T. Proteomic maps of breast cancer subtypes. Nature Communications. 7: 10259. PMID 26725330 DOI: 10.1038/ncomms10259  0.96
2016 Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MAS, Fiske BK, Fell MJ, Morrow JA, Reith AD, ... ... Mann M, et al. Phosphoproteomics reveals that Parkinson’s disease kinase LRRK2 regulates a subset of Rab GTPases Elife. 5. DOI: 10.7554/eLife.12813.001  0.96
2015 Ding L, Paszkowski-Rogacz M, Winzi M, Chakraborty D, Theis M, Singh S, Ciotta G, Poser I, Roguev A, Chu WK, Choudhary C, Mann M, Stewart AF, Krogan N, Buchholz F. Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells. Cell Systems. 1: 141-51. PMID 27135800 DOI: 10.1016/j.cels.2015.08.002  0.96
2015 Lund A, Bagger JI, Wewer Albrechtsen NJ, Christensen M, Grøndahl M, Hartmann B, Mathiesen ER, Hansen CP, Storkholm JH, van Hall G, Rehfeld JF, Hornburg D, Meissner F, Mann M, Larsen S, et al. Evidence of Extrapancreatic Glucagon Secretion in Man. Diabetes. PMID 26672094 DOI: 10.2337/db15-1541  0.44
2015 Iglesias-Gato D, Wikström P, Tyanova S, Lavallee C, Thysell E, Carlsson J, Hägglöf C, Cox J, Andrén O, Stattin P, Egevad L, Widmark A, Bjartell A, Collins CC, Bergh A, ... ... Mann M, et al. The Proteome of Primary Prostate Cancer. European Urology. PMID 26651926 DOI: 10.1016/j.eururo.2015.10.053  0.44
2015 Mischnik M, Sacco F, Cox J, Schneider HC, Schäfer M, Hendlich M, Crowther D, Mann M, Klabunde T. IKAP: A heuristic framework for inference of kinase activities from Phosphoproteomics data. Bioinformatics (Oxford, England). PMID 26628587 DOI: 10.1093/bioinformatics/btv699  0.44
2015 Schiaffino S, Reggiani C, Kostrominova TY, Mann M, Murgia M. Mitochondrial specialization revealed by single muscle fiber proteomics: focus on the Krebs cycle. Scandinavian Journal of Medicine & Science in Sports. 25: 41-8. PMID 26589116 DOI: 10.1111/sms.12606  0.96
2015 Humphrey SJ, James DE, Mann M. Protein Phosphorylation: A Major Switch Mechanism for Metabolic Regulation. Trends in Endocrinology and Metabolism: Tem. PMID 26498855 DOI: 10.1016/j.tem.2015.09.013  0.96
2015 Hein MY, Hubner NC, Poser I, Cox J, Nagaraj N, Toyoda Y, Gak IA, Weisswange I, Mansfeld J, Buchholz F, Hyman AA, Mann M. A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances. Cell. 163: 712-23. PMID 26496610 DOI: 10.1016/j.cell.2015.09.053  0.44
2015 Deshmukh AS, Cox J, Jensen LJ, Meissner F, Mann M. Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow. Journal of Proteome Research. 14: 4885-95. PMID 26457550 DOI: 10.1021/acs.jproteome.5b00720  0.96
2015 Mann M. The Rise of Mass Spectrometry and the Fall of Edman Degradation. Clinical Chemistry. PMID 26430071 DOI: 10.1373/clinchem.2014.237271  0.96
2015 Deeb SJ, Tyanova S, Hummel M, Schmidt-Supprian M, Cox J, Mann M. Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles. Molecular & Cellular Proteomics : McP. 14: 2947-60. PMID 26311899 DOI: 10.1074/mcp.M115.050245  0.96
2015 Humphrey SJ, Azimifar SB, Mann M. High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics. Nature Biotechnology. 33: 990-5. PMID 26280412 DOI: 10.1038/nbt.3327  0.96
2015 Beck S, Michalski A, Raether O, Lubeck M, Kaspar S, Goedecke N, Baessmann C, Hornburg D, Meier F, Paron I, Kulak NA, Cox J, Mann M. The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics. Molecular & Cellular Proteomics : McP. 14: 2014-29. PMID 25991688 DOI: 10.1074/mcp.M114.047407  0.96
2015 Räschle M, Smeenk G, Hansen RK, Temu T, Oka Y, Hein MY, Nagaraj N, Long DT, Walter JC, Hofmann K, Storchova Z, Cox J, Bekker-Jensen S, Mailand N, Mann M. DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links. Science (New York, N.Y.). 348: 1253671. PMID 25931565 DOI: 10.1126/science.1253671  0.96
2015 Hosp F, Scheltema RA, Eberl HC, Kulak NA, Keilhauer EC, Mayr K, Mann M. A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day. Molecular & Cellular Proteomics : McP. 14: 2030-41. PMID 25887394 DOI: 10.1074/mcp.O115.049460  0.96
2015 Schölz C, Weinert BT, Wagner SA, Beli P, Miyake Y, Qi J, Jensen LJ, Streicher W, McCarthy AR, Westwood NJ, Lain S, Cox J, Matthias P, Mann M, Bradner JE, et al. Acetylation site specificities of lysine deacetylase inhibitors in human cells. Nature Biotechnology. 33: 415-23. PMID 25751058 DOI: 10.1038/nbt.3130  0.96
2015 Tyanova S, Temu T, Carlson A, Sinitcyn P, Mann M, Cox J. Visualization of LC-MS/MS proteomics data in MaxQuant. Proteomics. 15: 1453-6. PMID 25644178 DOI: 10.1002/pmic.201400449  0.96
2015 Murgia M, Nagaraj N, Deshmukh AS, Zeiler M, Cancellara P, Moretti I, Reggiani C, Schiaffino S, Mann M. Single muscle fiber proteomics reveals unexpected mitochondrial specialization. Embo Reports. 16: 387-95. PMID 25643707 DOI: 10.15252/embr.201439757  0.96
2015 Deshmukh AS, Murgia M, Nagaraj N, Treebak JT, Cox J, Mann M. Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways, and transcription factors. Molecular & Cellular Proteomics : McP. 14: 841-53. PMID 25616865 DOI: 10.1074/mcp.M114.044222  0.96
2015 Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M. Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation. Molecular & Cellular Proteomics : McP. 14: 658-73. PMID 25576301 DOI: 10.1074/mcp.M114.042812  0.96
2015 Keilhauer EC, Hein MY, Mann M. Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS). Molecular & Cellular Proteomics : McP. 14: 120-35. PMID 25363814 DOI: 10.1074/mcp.M114.041012  0.96
2015 Schiller HB, Fernandez IE, Burgstaller G, Schaab C, Scheltema RA, Schwarzmayr T, Strom TM, Eickelberg O, Mann M. Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair Molecular Systems Biology. 11. DOI: 10.15252/msb.20156123  0.96
2015 Sacco F, Silvestri A, Posca D, Pirrò S, Gherardini PF, Castagnoli L, Mann M, Cesareni G. Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State Cell Systems. DOI: 10.1016/j.cels.2016.02.005  0.96
2015 Ding L, Paszkowski-Rogacz M, Winzi M, Chakraborty D, Theis M, Singh S, Ciotta G, Poser I, Roguev A, Chu WK, Choudhary C, Mann M, Stewart AF, Krogan N, Buchholz F. Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells Cell Systems. 1: 141-151. DOI: 10.1016/j.cels.2015.08.002  0.96
2014 Ripaud L, Chumakova V, Antonin M, Hastie AR, Pinkert S, Körner R, Ruff KM, Pappu RV, Hornburg D, Mann M, Hartl FU, Hipp MS. Overexpression of Q-rich prion-like proteins suppresses polyQ cytotoxicity and alters the polyQ interactome. Proceedings of the National Academy of Sciences of the United States of America. 111: 18219-24. PMID 25489109 DOI: 10.1073/pnas.1421313111  0.44
2014 Azimifar SB, Nagaraj N, Cox J, Mann M. Cell-type-resolved quantitative proteomics of murine liver. Cell Metabolism. 20: 1076-87. PMID 25470552 DOI: 10.1016/j.cmet.2014.11.002  0.44
2014 Marcais A, Blevins R, Graumann J, Feytout A, Dharmalingam G, Carroll T, Amado IF, Bruno L, Lee K, Walzer T, Mann M, Freitas AA, Boothby M, Fisher AG, Merkenschlager M. microRNA-mediated regulation of mTOR complex components facilitates discrimination between activation and anergy in CD4 T cells. The Journal of Experimental Medicine. 211: 2281-95. PMID 25311506 DOI: 10.1084/jem.20132059  0.44
2014 Benda C, Ebert J, Scheltema RA, Schiller HB, Baumgärtner M, Bonneau F, Mann M, Conti E. Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4. Molecular Cell. 56: 43-54. PMID 25280103 DOI: 10.1016/j.molcel.2014.09.002  0.44
2014 Wi?niewski JR, Hein MY, Cox J, Mann M. A "proteomic ruler" for protein copy number and concentration estimation without spike-in standards. Molecular & Cellular Proteomics : McP. 13: 3497-506. PMID 25225357 DOI: 10.1074/mcp.M113.037309  0.44
2014 Hornburg D, Drepper C, Butter F, Meissner F, Sendtner M, Mann M. Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics. Molecular & Cellular Proteomics : McP. 13: 3410-20. PMID 25193168 DOI: 10.1074/mcp.M113.037291  0.96
2014 Borner GH, Hein MY, Hirst J, Edgar JR, Mann M, Robinson MS. Fractionation profiling: a fast and versatile approach for mapping vesicle proteomes and protein-protein interactions. Molecular Biology of the Cell. 25: 3178-94. PMID 25165137 DOI: 10.1091/mbc.E14-07-1198  0.44
2014 Sharma K, D'Souza RC, Tyanova S, Schaab C, Wi?niewski JR, Cox J, Mann M. Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling. Cell Reports. 8: 1583-94. PMID 25159151 DOI: 10.1016/j.celrep.2014.07.036  0.96
2014 Grimm C, Holdt LM, Chen CC, Hassan S, Müller C, Jörs S, Cuny H, Kissing S, Schröder B, Butz E, Northoff B, Castonguay J, Luber CA, Moser M, Spahn S, ... ... Mann M, et al. High susceptibility to fatty liver disease in two-pore channel 2-deficient mice. Nature Communications. 5: 4699. PMID 25144390 DOI: 10.1038/ncomms5699  0.44
2014 May S, Hornburg D, Schludi MH, Arzberger T, Rentzsch K, Schwenk BM, Grässer FA, Mori K, Kremmer E, Banzhaf-Strathmann J, Mann M, Meissner F, Edbauer D. C9orf72 FTLD/ALS-associated Gly-Ala dipeptide repeat proteins cause neuronal toxicity and Unc119 sequestration. Acta Neuropathologica. 128: 485-503. PMID 25120191 DOI: 10.1007/s00401-014-1329-4  0.44
2014 Wueseke O, Bunkenborg J, Hein MY, Zinke A, Viscardi V, Woodruff JB, Oegema K, Mann M, Andersen JS, Hyman AA. The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix. Molecular Biology of the Cell. 25: 2984-92. PMID 25103243 DOI: 10.1091/mbc.E13-09-0514  0.44
2014 Tyanova S, Mann M, Cox J. MaxQuant for in-depth analysis of large SILAC datasets. Methods in Molecular Biology (Clifton, N.J.). 1188: 351-64. PMID 25059623 DOI: 10.1007/978-1-4939-1142-4_24  0.44
2014 Mann M. Fifteen years of Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC). Methods in Molecular Biology (Clifton, N.J.). 1188: 1-7. PMID 25059600 DOI: 10.1007/978-1-4939-1142-4_1  0.44
2014 D'Souza RC, Knittle AM, Nagaraj N, van Dinther M, Choudhary C, ten Dijke P, Mann M, Sharma K. Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β. Science Signaling. 7: rs5. PMID 25056879 DOI: 10.1126/scisignal.2004856  0.44
2014 Choudhary C, Weinert BT, Nishida Y, Verdin E, Mann M. The growing landscape of lysine acetylation links metabolism and cell signalling. Nature Reviews. Molecular Cell Biology. 15: 536-50. PMID 25053359 DOI: 10.1038/nrm3841  0.44
2014 Cox J, Hein MY, Luber CA, Paron I, Nagaraj N, Mann M. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ. Molecular & Cellular Proteomics : McP. 13: 2513-26. PMID 24942700 DOI: 10.1074/mcp.M113.031591  0.44
2014 Hellmuth S, Böttger F, Pan C, Mann M, Stemmann O. PP2A delays APC/C-dependent degradation of separase-associated but not free securin. The Embo Journal. 33: 1134-47. PMID 24781523 DOI: 10.1002/embj.201488098  0.44
2014 Sharma NL, Massie CE, Butter F, Mann M, Bon H, Ramos-Montoya A, Menon S, Stark R, Lamb AD, Scott HE, Warren AY, Neal DE, Mills IG. The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer. Nucleic Acids Research. 42: 6256-69. PMID 24753418 DOI: 10.1093/nar/gku281  0.44
2014 König AC, Hartl M, Boersema PJ, Mann M, Finkemeier I. The mitochondrial lysine acetylome of Arabidopsis. Mitochondrion. 19: 252-60. PMID 24727099 DOI: 10.1016/j.mito.2014.03.004  0.44
2014 Edfors F, Boström T, Forsström B, Zeiler M, Johansson H, Lundberg E, Hober S, Lehtiö J, Mann M, Uhlen M. Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins. Molecular & Cellular Proteomics : McP. 13: 1611-24. PMID 24722731 DOI: 10.1074/mcp.M113.034140  0.44
2014 Harner ME, Unger AK, Izawa T, Walther DM, Ozbalci C, Geimer S, Reggiori F, Brügger B, Mann M, Westermann B, Neupert W. Aim24 and MICOS modulate respiratory function, tafazzin-related cardiolipin modification and mitochondrial architecture. Elife. 3: e01684. PMID 24714493 DOI: 10.7554/eLife.01684  0.44
2014 Oren YS, McClure ML, Rowe SM, Sorscher EJ, Bester AC, Manor M, Kerem E, Rivlin J, Zahdeh F, Mann M, Geiger T, Kerem B. The unfolded protein response affects readthrough of premature termination codons. Embo Molecular Medicine. 6: 685-701. PMID 24705877 DOI: 10.1002/emmm.201303347  0.44
2014 Ericson M, Janes MA, Butter F, Mann M, Ullu E, Tschudi C. On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei. Bmc Biology. 12: 14. PMID 24552149 DOI: 10.1186/1741-7007-12-14  0.44
2014 Kulak NA, Pichler G, Paron I, Nagaraj N, Mann M. Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells. Nature Methods. 11: 319-24. PMID 24487582 DOI: 10.1038/nmeth.2834  0.44
2014 Jungmichel S, Sylvestersen KB, Choudhary C, Nguyen S, Mann M, Nielsen ML. Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry. Cell Reports. 6: 578-91. PMID 24462288 DOI: 10.1016/j.celrep.2013.12.038  0.44
2014 Meissner F, Mann M. Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology. Nature Immunology. 15: 112-7. PMID 24448568 DOI: 10.1038/ni.2781  0.44
2014 König AC, Hartl M, Pham PA, Laxa M, Boersema PJ, Orwat A, Kalitventseva I, Plöchinger M, Braun HP, Leister D, Mann M, Wachter A, Fernie AR, Finkemeier I. The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiology. 164: 1401-14. PMID 24424322 DOI: 10.1104/pp.113.232496  0.44
2014 Robles MS, Cox J, Mann M. In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism. Plos Genetics. 10: e1004047. PMID 24391516 DOI: 10.1371/journal.pgen.1004047  0.44
2014 Deeb SJ, Cox J, Schmidt-Supprian M, Mann M. N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes. Molecular & Cellular Proteomics : McP. 13: 240-51. PMID 24190977 DOI: 10.1074/mcp.M113.033977  0.44
2013 Chou CF, Lin WJ, Lin CC, Luber CA, Godbout R, Mann M, Chen CY. DEAD box protein DDX1 regulates cytoplasmic localization of KSRP. Plos One. 8: e73752. PMID 24023901 DOI: 10.1371/journal.pone.0073752  0.96
2013 Mann K, Mann M. The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell. Proteome Science. 11: 40. PMID 23981693 DOI: 10.1186/1477-5956-11-40  0.44
2013 Schiller HB, Hermann MR, Polleux J, Vignaud T, Zanivan S, Friedel CC, Sun Z, Raducanu A, Gottschalk KE, Théry M, Mann M, Fässler R. β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments. Nature Cell Biology. 15: 625-36. PMID 23708002 DOI: 10.1038/ncb2747  0.96
2013 Marx H, Lemeer S, Schliep JE, Matheron L, Mohammed S, Cox J, Mann M, Heck AJ, Kuster B. A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics. Nature Biotechnology. 31: 557-64. PMID 23685481 DOI: 10.1038/nbt.2585  0.96
2013 Kappei D, Butter F, Benda C, Scheibe M, DraÅ¡kovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, et al. HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. The Embo Journal. 32: 1681-701. PMID 23685356 DOI: 10.1038/emboj.2013.105  0.96
2013 Klass DM, Scheibe M, Butter F, Hogan GJ, Mann M, Brown PO. Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae. Genome Research. 23: 1028-38. PMID 23636942 DOI: 10.1101/gr.153031.112  0.96
2013 Sparmann A, Xie Y, Verhoeven E, Vermeulen M, Lancini C, Gargiulo G, Hulsman D, Mann M, Knoblich JA, van Lohuizen M. The chromodomain helicase Chd4 is required for Polycomb-mediated inhibition of astroglial differentiation. The Embo Journal. 32: 1598-612. PMID 23624931 DOI: 10.1038/emboj.2013.93  0.96
2013 Radovanac K, Morgner J, Schulz JN, Blumbach K, Patterson C, Geiger T, Mann M, Krieg T, Eckes B, Fässler R, Wickström SA. Stabilization of integrin-linked kinase by the Hsp90-CHIP axis impacts cellular force generation, migration and the fibrotic response. The Embo Journal. 32: 1409-24. PMID 23612611 DOI: 10.1038/emboj.2013.90  0.96
2013 Neuhauser N, Nagaraj N, McHardy P, Zanivan S, Scheltema R, Cox J, Mann M. High performance computational analysis of large-scale proteome data sets to assess incremental contribution to coverage of the human genome. Journal of Proteome Research. 12: 2858-68. PMID 23611042 DOI: 10.1021/pr400181q  0.44
2013 Robles MS, Mann M. Proteomic approaches in circadian biology. Handbook of Experimental Pharmacology. 389-407. PMID 23604489 DOI: 10.1007/978-3-642-25950-0_17  0.44
2013 Tinti M, Kiemer L, Costa S, Miller ML, Sacco F, Olsen JV, Carducci M, Paoluzi S, Langone F, Workman CT, Blom N, Machida K, Thompson CM, Schutkowski M, Brunak S, ... Mann M, et al. The SH2 domain interaction landscape. Cell Reports. 3: 1293-305. PMID 23545499 DOI: 10.1016/j.celrep.2013.03.001  0.96
2013 Mann M, Kulak NA, Nagaraj N, Cox J. The coming age of complete, accurate, and ubiquitous proteomes. Molecular Cell. 49: 583-90. PMID 23438854 DOI: 10.1016/j.molcel.2013.01.029  0.44
2013 Geiger T, Velic A, Macek B, Lundberg E, Kampf C, Nagaraj N, Uhlen M, Cox J, Mann M. Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse. Molecular & Cellular Proteomics : McP. 12: 1709-22. PMID 23436904 DOI: 10.1074/mcp.M112.024919  0.44
2013 Bassik MC, Kampmann M, Lebbink RJ, Wang S, Hein MY, Poser I, Weibezahn J, Horlbeck MA, Chen S, Mann M, Hyman AA, Leproust EM, McManus MT, Weissman JS. A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility. Cell. 152: 909-22. PMID 23394947 DOI: 10.1016/j.cell.2013.01.030  0.96
2013 Zanivan S, Meves A, Behrendt K, Schoof EM, Neilson LJ, Cox J, Tang HR, Kalna G, van Ree JH, van Deursen JM, Trempus CS, Machesky LM, Linding R, Wickström SA, Fässler R, ... Mann M, et al. In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis. Cell Reports. 3: 552-66. PMID 23375375 DOI: 10.1016/j.celrep.2013.01.003  0.96
2013 Tyanova S, Cox J, Olsen J, Mann M, Frishman D. Phosphorylation variation during the cell cycle scales with structural propensities of proteins. Plos Computational Biology. 9: e1002842. PMID 23326221 DOI: 10.1371/journal.pcbi.1002842  0.44
2013 Pasini EM, Braks JA, Fonager J, Klop O, Aime E, Spaccapelo R, Otto TD, Berriman M, Hiss JA, Thomas AW, Mann M, Janse CJ, Kocken CH, Franke-Fayard B. Proteomic and genetic analyses demonstrate that Plasmodium berghei blood stages export a large and diverse repertoire of proteins. Molecular & Cellular Proteomics : McP. 12: 426-48. PMID 23197789 DOI: 10.1074/mcp.M112.021238  0.96
2012 Stern-Ginossar N, Weisburd B, Michalski A, Le VT, Hein MY, Huang SX, Ma M, Shen B, Qian SB, Hengel H, Mann M, Ingolia NT, Weissman JS. Decoding human cytomegalovirus. Science (New York, N.Y.). 338: 1088-93. PMID 23180859 DOI: 10.1126/science.1227919  0.44
2012 Cox J, Mann M. 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data. Bmc Bioinformatics. 13: S12. PMID 23176165 DOI: 10.1186/1471-2105-13-S16-S12  0.44
2012 Vidal M, Chan DW, Gerstein M, Mann M, Omenn GS, Tagle D, Sechi S. The human proteome - a scientific opportunity for transforming diagnostics, therapeutics, and healthcare. Clinical Proteomics. 9: 6. PMID 22583803 DOI: 10.1186/1559-0275-9-6  0.44
2012 Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C. Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response. Molecular Cell. 46: 212-25. PMID 22424773 DOI: 10.1016/j.molcel.2012.01.026  0.96
2011 Cambridge SB, Gnad F, Nguyen C, Bermejo JL, Krüger M, Mann M. Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover. Journal of Proteome Research. 10: 5275-84. PMID 22050367 DOI: 10.1021/pr101183k  0.96
2011 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Molecular & Cellular Proteomics : McP. 10: M111.013284. PMID 21890473 DOI: 10.1074/mcp.M111.013284  0.96
2010 Gnad F, Ren S, Choudhary C, Cox J, Mann M. Predicting post-translational lysine acetylation using support vector machines. Bioinformatics (Oxford, England). 26: 1666-8. PMID 20505001 DOI: 10.1093/bioinformatics/btq260  0.96
2010 Choudhary C, Mann M. Decoding signalling networks by mass spectrometry-based proteomics. Nature Reviews. Molecular Cell Biology. 11: 427-39. PMID 20461098 DOI: 10.1038/nrm2900  0.96
2009 Choudhary C, Olsen JV, Brandts C, Cox J, Reddy PN, Böhmer FD, Gerke V, Schmidt-Arras DE, Berdel WE, Müller-Tidow C, Mann M, Serve H. Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. Molecular Cell. 36: 326-39. PMID 19854140 DOI: 10.1016/j.molcel.2009.09.019  0.96
2009 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science (New York, N.Y.). 325: 834-40. PMID 19608861 DOI: 10.1126/science.1175371  0.96
2008 Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, ... ... Mann M, et al. Human Proteinpedia enables sharing of human protein data. Nature Biotechnology. 26: 164-7. PMID 18259167 DOI: 10.1038/nbt0208-164  1
2006 Ong SE, Blagoev B, Kratchmarova I, Foster LJ, Andersen JS, Mann M. Stable Isotope Labeling by Amino Acids in Cell Culture for Quantitative Proteomics Cell Biology, Four-Volume Set. 4: 427-436. DOI: 10.1016/B978-012164730-8/50239-2  0.44
2006 Foster LJ, Mann M. Protein Identification and Sequencing by Mass Spectrometry Cell Biology, Four-Volume Set. 4: 363-369. DOI: 10.1016/B978-012164730-8/50231-8  0.44
2004 Kristiansen TZ, Nielsen MM, Blagoev B, Pandey A, Mann M. Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 285-92. PMID 15500253  1
2004 Steen H, Mann M. The ABC's (and XYZ's) of peptide sequencing. Nature Reviews. Molecular Cell Biology. 5: 699-711. PMID 15340378 DOI: 10.1038/nrm1468  1
2004 Ibarrola N, Kratchmarova I, Nakajima D, Schiemann WP, Moustakas A, Pandey A, Mann M. Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling. Bmc Cell Biology. 5: 2. PMID 14728725 DOI: 10.1186/1471-2121-5-2  0.96
2003 Steen H, Fernandez M, Ghaffari S, Pandey A, Mann M. Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning. Molecular & Cellular Proteomics : McP. 2: 138-45. PMID 12644574 DOI: 10.1074/mcp.M300001-MCP200  1
2003 Pandey A, Peri S, Thacker C, Whipple CA, Collins JJ, Mann M. Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome. Bioinformatics (Oxford, England). 19: 169-72. PMID 12538235 DOI: 10.1093/bioinformatics/19.2.169  0.96
2002 Andersen JS, Rappsilber J, Steen H, Pandey A, Molina H, Lund M, Podtelejnikov A, Lamond AI, Mann M. Multi-Protein Complexes Studied by Mass Spectrometry. Thescientificworldjournal. 2: 91-92. PMID 29973817 DOI: 10.1100/tsw.2002.43  1
2002 Steen H, Mann M. Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags. Analytical Chemistry. 74: 6230-6. PMID 12510743  1
2002 Pandey A, Blagoev B, Kratchmarova I, Fernandez M, Nielsen M, Kristiansen TZ, Ohara O, Podtelejnikov AV, Roche S, Lodish HF, Mann M. Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases. Oncogene. 21: 8029-36. PMID 12439753 DOI: 10.1038/sj.onc.1205988  0.96
2002 Steen H, Pandey A, Andersen JS, Mann M. Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Science's Stke : Signal Transduction Knowledge Environment. 2002: pl16. PMID 12381836 DOI: 10.1126/stke.2002.154.pl16  1
2002 Grønborg M, Kristiansen TZ, Stensballe A, Andersen JS, Ohara O, Mann M, Jensen ON, Pandey A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Molecular & Cellular Proteomics : McP. 1: 517-27. PMID 12239280  1
2002 Steen H, Mann M. A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode. Journal of the American Society For Mass Spectrometry. 13: 996-1003. PMID 12216740 DOI: 10.1016/S1044-0305(02)00415-4  1
2002 Blagoev B, Kratchmarova I, Nielsen MM, Fernandez MM, Voldby J, Andersen JS, Kristiansen K, Pandey A, Mann M. Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature. The Journal of Biological Chemistry. 277: 42011-6. PMID 12189153 DOI: 10.1074/jbc.M206975200  1
2002 Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics : McP. 1: 376-86. PMID 12118079  1
2002 Kratchmarova I, Kalume DE, Blagoev B, Scherer PE, Podtelejnikov AV, Molina H, Bickel PE, Andersen JS, Fernandez MM, Bunkenborg J, Roepstorff P, Kristiansen K, Lodish HF, Mann M, Pandey A. A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes. Molecular & Cellular Proteomics : McP. 1: 213-22. PMID 12096121  0.96
2002 Pandey A, Dan I, Kristiansen TZ, Watanabe NM, Voldby J, Kajikawa E, Khosravi-Far R, Blagoev B, Mann M. Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain. Oncogene. 21: 3939-48. PMID 12032833 DOI: 10.1038/sj.onc.1205478  0.96
2002 Mann M, Ong SE, Grønborg M, Steen H, Jensen ON, Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20: 261-8. PMID 12007495  1
2002 Pandey A, Ibarrola N, Kratchmarova I, Fernandez MM, Constantinescu SN, Ohara O, Sawasdikosol S, Lodish HF, Mann M. A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling. The Journal of Biological Chemistry. 277: 19131-8. PMID 11891219 DOI: 10.1074/jbc.M110318200  0.96
2002 Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI. Directed proteomic analysis of the human nucleolus. Current Biology : Cb. 12: 1-11. PMID 11790298 DOI: 10.1016/S0960-9822(01)00650-9  0.96
2002 Dan I, Ong SE, Watanabe NM, Blagoev B, Nielsen MM, Kajikawa E, Kristiansen TZ, Mann M, Pandey A. Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties. The Journal of Biological Chemistry. 277: 5929-39. PMID 11741893 DOI: 10.1074/jbc.M110882200  0.96
2002 Steen H, Kuster B, Fernandez M, Pandey A, Mann M. Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. The Journal of Biological Chemistry. 277: 1031-9. PMID 11687594 DOI: 10.1074/jbc.M109992200  1
2001 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A. Common pitfalls in bioinformatics-based analyses: look before you leap. Trends in Genetics : Tig. 17: 541-5. PMID 12078716  0.96
2001 Steen H, Petersen J, Mann M, Jensen ON. Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: tryptophans 54 and 88 of E. coli SSB cross-link to DNA. Protein Science : a Publication of the Protein Society. 10: 1989-2001. PMID 11567090 DOI: 10.1110/ps.07601  1
2001 Rappsilber J, Steen H, Mann M. Labile sulfogroup allows differentiation of sulfotyrosine and phosphotyrosine in peptides. Journal of Mass Spectrometry : Jms. 36: 832-3. PMID 11473407 DOI: 10.1002/jms.195  0.96
2001 Steen H, Küster B, Mann M. Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning. Journal of Mass Spectrometry : Jms. 36: 782-90. PMID 11473401 DOI: 10.1002/jms.174  1
2001 Mann M, Hendrickson RC, Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annual Review of Biochemistry. 70: 437-73. PMID 11395414 DOI: 10.1146/annurev.biochem.70.1.437  0.96
2001 Steen H, Küster B, Fernandez M, Pandey A, Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. Analytical Chemistry. 73: 1440-8. PMID 11321292  1
2001 Spada F, Steen H, Troedsson C, Kallesoe T, Spriet E, Mann M, Thompson EM. Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica. The Journal of Biological Chemistry. 276: 20624-32. PMID 11279070 DOI: 10.1074/jbc.M100438200  1
2001 Steen H, Mann M. Similarity between condensed phase and gas phase chemistry: fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics. Journal of the American Society For Mass Spectrometry. 12: 228-32. PMID 11212008 DOI: 10.1016/S1044-0305(00)00219-1  1
2001 Mann M, Pandey A. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases. Trends in Biochemical Sciences. 26: 54-61. PMID 11165518  1
2000 Pandey A, Andersen JS, Mann M. Use of mass spectrometry to study signaling pathways. Science's Stke : Signal Transduction Knowledge Environment. 2000: pl1. PMID 11752594 DOI: 10.1126/stke.2000.37.pl1  1
2000 Pandey A, Fernandez MM, Steen H, Blagoev B, Nielsen MM, Roche S, Mann M, Lodish HF. Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways. The Journal of Biological Chemistry. 275: 38633-9. PMID 10993906 DOI: 10.1074/jbc.M007849200  0.96
2000 Pandey A, Mann M. Proteomics to study genes and genomes. Nature. 405: 837-46. PMID 10866210 DOI: 10.1038/35015709  1
2000 Pandey A, Podtelejnikov AV, Blagoev B, Bustelo XR, Mann M, Lodish HF. Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. Proceedings of the National Academy of Sciences of the United States of America. 97: 179-84. PMID 10618391 DOI: 10.1073/pnas.97.1.179  0.96
1989 Fenn JB, Mann M, Meng CK, Wong SF, Whitehouse CM. Electrospray ionization for mass spectrometry of large biomolecules. Science (New York, N.Y.). 246: 64-71. PMID 2675315  0.96
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