| Year |
Citation |
Score |
| 2024 |
Nikolaev DM, Mironov VN, Metelkina EM, Shtyrov AA, Mereshchenko AS, Demidov NA, Vyazmin SY, Tennikova TB, Moskalenko SE, Bondarev SA, Zhouravleva GA, Vasin AV, Panov MS, Ryazantsev MN. Rational Design of Far-Red Archaerhodopsin-3-Based Fluorescent Genetically Encoded Voltage Indicators: from Elucidation of the Fluorescence Mechanism in Archers to Novel Red-Shifted Variants. Acs Physical Chemistry Au. 4: 347-362. PMID 39069984 DOI: 10.1021/acsphyschemau.3c00073 |
0.345 |
|
| 2021 |
Nikolaev DM, Manathunga M, Orozco-Gonzalez Y, Shtyrov AA, Guerrero Martínez YO, Gozem S, Ryazantsev MN, Coutinho K, Canuto S, Olivucci M. Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model: Applications in Rhodopsin and Rhodopsin-Mimicking Systems. Journal of Chemical Theory and Computation. PMID 34379429 DOI: 10.1021/acs.jctc.1c00221 |
0.484 |
|
| 2021 |
Shtyrov AA, Nikolaev DM, Mironov VN, Vasin AV, Panov MS, Tveryanovich YS, Ryazantsev MN. Simple Models to Study Spectral Properties of Microbial and Animal Rhodopsins: Evaluation of the Electrostatic Effect of Charged and Polar Residues on the First Absorption Band Maxima. International Journal of Molecular Sciences. 22. PMID 33809708 DOI: 10.3390/ijms22063029 |
0.318 |
|
| 2020 |
Nikolaev DM, Shtyrov AA, Mereshchenko AS, Panov MS, Tveryanovich YS, Ryazantsev MN. An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: the case of rhodopsins' first spectral absorption band maxima. Physical Chemistry Chemical Physics : Pccp. 22: 18114-18123. PMID 32761024 DOI: 10.1039/D0Cp02638G |
0.561 |
|
| 2019 |
Ryazantsev MN, Nikolaev DM, Struts AV, Brown MF. Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins. The Journal of Membrane Biology. PMID 31570961 DOI: 10.1007/S00232-019-00095-0 |
0.576 |
|
| 2018 |
Nikolaev DM, Shtyrov AA, Panov MS, Jamal A, Chakchir OB, Kochemirovsky VA, Olivucci M, Ryazantsev MN. A Comparative Study of Modern Homology Modeling Algorithms for Rhodopsin Structure Prediction. Acs Omega. 3: 7555-7566. PMID 30087916 DOI: 10.1021/acsomega.8b00721 |
0.536 |
|
| 2017 |
Nikolaev DM, Emelyanov A, Boitsov VM, Panov MS, Ryazantsev MN. A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling. F1000research. 6: 33. PMID 28435665 DOI: 10.12688/F1000Research.10541.3 |
0.578 |
|
| Show low-probability matches. |