| Year |
Citation |
Score |
| 2021 |
Nikolaev DM, Manathunga M, Orozco-Gonzalez Y, Shtyrov AA, Guerrero Martínez YO, Gozem S, Ryazantsev MN, Coutinho K, Canuto S, Olivucci M. Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model: Applications in Rhodopsin and Rhodopsin-Mimicking Systems. Journal of Chemical Theory and Computation. PMID 34379429 DOI: 10.1021/acs.jctc.1c00221 |
0.486 |
|
| 2021 |
Shtyrov AA, Nikolaev DM, Mironov VN, Vasin AV, Panov MS, Tveryanovich YS, Ryazantsev MN. Simple Models to Study Spectral Properties of Microbial and Animal Rhodopsins: Evaluation of the Electrostatic Effect of Charged and Polar Residues on the First Absorption Band Maxima. International Journal of Molecular Sciences. 22. PMID 33809708 DOI: 10.3390/ijms22063029 |
0.318 |
|
| 2020 |
Nikolaev DM, Shtyrov AA, Mereshchenko AS, Panov MS, Tveryanovich YS, Ryazantsev MN. An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: the case of rhodopsins' first spectral absorption band maxima. Physical Chemistry Chemical Physics : Pccp. 22: 18114-18123. PMID 32761024 DOI: 10.1039/D0Cp02638G |
0.56 |
|
| 2019 |
Ryazantsev MN, Nikolaev DM, Struts AV, Brown MF. Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins. The Journal of Membrane Biology. PMID 31570961 DOI: 10.1007/S00232-019-00095-0 |
0.576 |
|
| 2018 |
Nikolaev DM, Shtyrov AA, Panov MS, Jamal A, Chakchir OB, Kochemirovsky VA, Olivucci M, Ryazantsev MN. A Comparative Study of Modern Homology Modeling Algorithms for Rhodopsin Structure Prediction. Acs Omega. 3: 7555-7566. PMID 30087916 DOI: 10.1021/acsomega.8b00721 |
0.537 |
|
| 2017 |
Nikolaev DM, Emelyanov A, Boitsov VM, Panov MS, Ryazantsev MN. A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling. F1000research. 6: 33. PMID 28435665 DOI: 10.12688/F1000Research.10541.3 |
0.578 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2021 |
Strashkov DM, Mironov VN, Nikolaev DM, Panov MS, Linnik SA, Mereshchenko AS, Kochemirovsky VA, Vasin AV, Ryazantsev MN. Azobenzene/Tetraethyl Ammonium Photochromic Potassium Channel Blockers: Scope and Limitations for Design of Para-Substituted Derivatives with Specific Absorption Band Maxima and Thermal Isomerization Rate. International Journal of Molecular Sciences. 22. PMID 34884976 DOI: 10.3390/ijms222313171 |
0.274 |
|
| 2023 |
Nikolaev DM, Mironov VN, Shtyrov AA, Kvashnin ID, Mereshchenko AS, Vasin AV, Panov MS, Ryazantsev MN. Fluorescence Imaging of Cell Membrane Potential: From Relative Changes to Absolute Values. International Journal of Molecular Sciences. 24. PMID 36768759 DOI: 10.3390/ijms24032435 |
0.271 |
|
| 2023 |
Nikolaev DM, Shtyrov AA, Vyazmin SY, Vasin AV, Panov MS, Ryazantsev MN. Fluorescence of the Retinal Chromophore in Microbial and Animal Rhodopsins. International Journal of Molecular Sciences. 24. PMID 38139098 DOI: 10.3390/ijms242417269 |
0.248 |
|
| 2019 |
Boitsov V, Knyazev N, Shmakov S, Vyazmin S, Nikolaev D, Chakchir O, Stepakov A. Facile One-Pot Synthesis of Benzo[h]isoquinolines via Strong Acid Triggered
[1,2]-Sigmatropic Rearrangement: A Theoretical and Experimental Studies Asian Journal of Chemistry. 31: 2133-2138. DOI: 10.14233/Ajchem.2019.22074 |
0.237 |
|
| 2021 |
Stupin DD, Kuzina EA, Abelit AA, Emelyanov AK, Nikolaev DM, Ryazantsev MN, Koniakhin SV, Dubina MV. Bioimpedance Spectroscopy: Basics and Applications. Acs Biomaterials Science & Engineering. PMID 33749256 DOI: 10.1021/acsbiomaterials.0c01570 |
0.178 |
|
| 2019 |
Ryazantsev MN, Nikolaev DM, Osipov DE, Strashkov DM, Vyazmin SY, Akulov VE, Kravtcov DV, Chakchir OB, Panov MS. Molecular mechanisms of adaptation to the habitat depth in visual pigments of A. subulata and L. forbesi squids: on the role of the S270F substitution Journal of Integrated Omics. 9. DOI: 10.5584/JIOMICS.V9I1.273 |
0.125 |
|
| 2020 |
Podoskin A, Golovin V, Gavrina P, Veselov D, Zolotarev V, Shamakhov V, Nikolaev D, Leshko A, Slipchenko S, Pikhtin N, Kopév P. Ultrabroad tuning range (100 nm) of external-cavity continuous-wave high-power semiconductor lasers based on a single InGaAs quantum well. Applied Optics. 58: 9089-9093. PMID 31873586 DOI: 10.1364/AO.58.009089 |
0.119 |
|
| Hide low-probability matches. |