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Miklos Bodanszky - Related publications

1966-1983 Chemistry and biochemistry Case Western Reserve University, Cleveland Heights, OH, United States 
peptide chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Arakawa T, Tokunaga M, Kita Y, Niikura T, Baker RW, Reimer JM, Leschziner AE. Structure Analysis of Proteins and Peptides by Difference Circular Dichroism Spectroscopy. The Protein Journal. PMID 34709521 DOI: 10.1007/s10930-021-10024-7   
2021 Golysheva EA, Boyle AL, Biondi B, Ruzza P, Kros A, Raap J, Toniolo C, Formaggio F, Dzuba SA. Probing the E/K Peptide Coiled-Coil Assembly by Double Electron-Electron Resonance and Circular Dichroism. Biochemistry. 60: 19-30. PMID 33320519 DOI: 10.1021/acs.biochem.0c00773   
2021 Nguyen AT, Szeto C, Gras S. The pockets guide to HLA class I molecules. Biochemical Society Transactions. 49: 2319-2331. PMID 34581761 DOI: 10.1042/BST20210410   
2021 Tang R, Song Y, Shi M, Jiang Z, Zhang L, Xiao Y, Tian Y, Zhou S. Rational Design of a Dual-Targeting Natural Toxin-Like Bicyclic Peptide for Selective Bioenergetic Blockage in Cancer Cells. Bioconjugate Chemistry. PMID 34606715 DOI: 10.1021/acs.bioconjchem.1c00366   
2021 Lü Y, Bai J, Tan D, Chen T, Shan A. [The effects of hinge structure on the biological activity of antimicrobial peptides and its application in molecular design: a review]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 3142-3150. PMID 34622623 DOI: 10.13345/j.cjb.200728   
2021 Milorey B, Schwalbe H, O'Neill N, Schweitzer-Stenner R. Repeating Aspartic Acid Residues Prefer Turn-like Conformations in the Unfolded State: Implications for Early Protein Folding. The Journal of Physical Chemistry. B. PMID 34619031 DOI: 10.1021/acs.jpcb.1c06472   
2021 Sun L, Fu T, Zhao D, Fan H, Zhong S. Divide-and-link peptide docking: a fragment-based peptide docking protocol. Physical Chemistry Chemical Physics : Pccp. PMID 34596658 DOI: 10.1039/d1cp02098f   
2021 Singh J, Maurya A, Singh PK, Viswanathan V, Ahmad MI, Sharma P, Sharma S, Singh TP. A Peptide Bond from the Inter-lobe Segment in the Bilobal Lactoferrin Acts as a Preferred Site for Cleavage for Serine Proteases to Generate the Perfect C-lobe: Structure of the Pepsin Hydrolyzed Lactoferrin C-lobe at 2.28 Å Resolution. The Protein Journal. PMID 34734372 DOI: 10.1007/s10930-021-10028-3   
2021 Miao J, Descoteaux ML, Lin YS. Structure prediction of cyclic peptides by molecular dynamics + machine learning. Chemical Science. 12: 14927-14936. PMID 34820109 DOI: 10.1039/d1sc05562c   
2021 Palzkill T, Boragine DM, Huang W, Su LH. Deep Sequencing of a Systematic Peptide Library Reveals Conformationally-Constrained Protein Interface Peptides that Disrupt a Protein-Protein Interaction. Chembiochem : a European Journal of Chemical Biology. PMID 34821011 DOI: 10.1002/cbic.202100504   
2021 Takashima H, Yoshimori A, Honda E, Taguri T, Ozawa J, Kasai M, Shuto S, Takehara D. Visualized and Quantitative Conformational Analysis of Peptidomimetics. Acs Omega. 6: 26601-26612. PMID 34661014 DOI: 10.1021/acsomega.1c03967   
2021 Cuy-Chaparro L, Bohórquez MD, Arévalo-Pinzón G, Castañeda-Ramírez JJ, Suárez CF, Pabón L, Ordóñez D, Gallego-López GM, Suárez CE, Moreno-Pérez DA, Patarroyo MA. Ligand-Receptor Interaction: AMA-1 Contains Small Regions Governing Bovine Erythrocyte Binding. International Journal of Molecular Sciences. 22. PMID 33450807 DOI: 10.3390/ijms22020714   
2021 Ho TNT, Lee HS, Swaminathan S, Goodwin L, Rai N, Ushay B, Lewis RJ, Rosengren KJ, Conibear AC. Posttranslational modifications of α-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding. Rsc Medicinal Chemistry. 12: 1574-1584. PMID 34671739 DOI: 10.1039/d1md00182e   
2021 Pei K, Zhang J, Zou T, Liu Z. AimR Adopts Preexisting Dimer Conformations for Specific Target Recognition in Lysis-Lysogeny Decisions of Phage phi3T. Biomolecules. 11. PMID 34572534 DOI: 10.3390/biom11091321   
2021 Efaz FM, Islam S, Talukder SA, Akter S, Tashrif MZ, Ali MA, Sufian MA, Parves MR, Islam MJ, Halim MA. Repurposing fusion inhibitor peptide against SARS-CoV-2. Journal of Computational Chemistry. PMID 34591335 DOI: 10.1002/jcc.26758   
2021 Lee WC, Jang A, Lee JY, Kim Y. Structural implication of substrate binding by peptidoglycan remodeling enzyme MepS. Biochemical and Biophysical Research Communications. 583: 178-183. PMID 34741988 DOI: 10.1016/j.bbrc.2021.10.050   
2021 Zhang P, Gao J, Che H, Xue W, Yang D. Molecular Basis of IgE-Mediated Shrimp Allergy and Heat Desensitization. Nutrients. 13. PMID 34684397 DOI: 10.3390/nu13103397   
2021 Balogh BD, Szunyog G, Lukács M, Szakács B, Sóvágó I, Várnagy K. Thermodynamics and structural characterization of the nickel(II) and zinc(II) complexes of various peptide fragments of tau protein. Dalton Transactions (Cambridge, England : 2003). 50: 14411-14420. PMID 34569575 DOI: 10.1039/d1dt02324a   
2021 Morgan BR, Massi F. The Role of Substrate Mediated Allostery in the Catalytic Competency of the Bacterial Oligosaccharyltransferase PglB. Frontiers in Molecular Biosciences. 8: 740904. PMID 34604309 DOI: 10.3389/fmolb.2021.740904   
2021 Lei J, Cai M, Shen Y, Lin D, Deng X. Molecular dynamics study on the inhibition mechanisms of ReACp53 peptide for p53-R175H mutant aggregation. Physical Chemistry Chemical Physics : Pccp. PMID 34612239 DOI: 10.1039/d1cp03094a   
2021 Preußke N, Lipfert M, Rothemund S, Leippe M, Sönnichsen FD. Designed Trp-Cage Proteins with Antimicrobial Activity and Enhanced Stability. Biochemistry. PMID 34613690 DOI: 10.1021/acs.biochem.1c00567   
2021 Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, et al. Structure, function and pharmacology of human itch receptor complexes. Nature. PMID 34789875 DOI: 10.1038/s41586-021-04077-y   
2021 Zegota MM, Müller MA, Lantzberg B, Kizilsavas G, Coelho JAS, Moscariello P, Martínez-Negro M, Morsbach S, Gois PMP, Wagner M, Ng DYW, Kuan SL, Weil T. Dual Stimuli-Responsive Dynamic Covalent Peptide Tags: Toward Sequence-Controlled Release in Tumor-like Microenvironments. Journal of the American Chemical Society. PMID 34632780 DOI: 10.1021/jacs.1c06559   
2021 Lior Y, Shtriker E, Kahremany S, Lewis EC, Gruzman A. Development of anti-inflammatory peptidomimetics based on the structure of human alpha1-antitrypsin. European Journal of Medicinal Chemistry. 113969. PMID 34763945 DOI: 10.1016/j.ejmech.2021.113969   
2021 He T, Liu J, Wang JP. Development of a Dihydropteroate Synthase-Based Fluorescence Polarization Assay for Detection of Sulfonamides and Studying Its Recognition Mechanism. Journal of Agricultural and Food Chemistry. PMID 34783550 DOI: 10.1021/acs.jafc.1c05674   
2021 Chen YR, Hsiao NW, Lee YZ, Huang SS, Chang CC, Tsai JR, Lin HC, Toullec JY, Lee CY, Lyu PC. Structure-Based Functional Analysis of a Hormone Belonging to an Ecdysozoan Peptide Superfamily: Revelation of a Common Molecular Architecture and Residues Possibly for Receptor Interaction. International Journal of Molecular Sciences. 22. PMID 34681803 DOI: 10.3390/ijms222011142   
2021 Hassan M, Coutsias EA. Kinematic Reconstruction of Cyclic Peptides and Protein Backbones from Partial Data. Journal of Chemical Information and Modeling. PMID 34570494 DOI: 10.1021/acs.jcim.1c00453   
2021 Guo S, Zahiri H, Stevens C, Spaanderman DC, Milroy LG, Ottmann C, Brunsveld L, Voets IK, Davies PL. Molecular basis for inhibition of adhesin-mediated bacterial-host interactions through a peptide-binding domain. Cell Reports. 37: 110002. PMID 34788627 DOI: 10.1016/j.celrep.2021.110002   
2021 Liu Y, Zhang Y, Sun Y, Ding F. A buried glutamate in the cross-β core renders β-endorphin fibrils reversible. Nanoscale. PMID 34812835 DOI: 10.1039/d1nr05679d   
2021 Grahame DAS, Dupuis JH, Bryksa BC, Tanaka T, Yada RY. Improving the alkaline stability of pepsin through rational protein design using renin, an alkaline-stable aspartic protease, as a structural and functional reference. Enzyme and Microbial Technology. 150: 109871. PMID 34489030 DOI: 10.1016/j.enzmictec.2021.109871   
2021 Jin L, Han X, Zhang X, Zhao Z, Ulrich J, Syrovets T, Simmet T. Identification of Oleanolic Acid as Allosteric Agonist of Integrin α by Combination of Modeling and Analysis. Frontiers in Pharmacology. 12: 702529. PMID 34603018 DOI: 10.3389/fphar.2021.702529   
2021 Zhang W, Liu J, Zhang C, Yu X, Zhong B. Structural definition of the discrete hotspot sites of BMP-2 conformational wrist epitope and rational design of the hotspot-derived osteogenic peptides against chondrocyte senescence. Bioorganic Chemistry. 116: 105382. PMID 34598087 DOI: 10.1016/j.bioorg.2021.105382   
2021 Lee KH, Chang YC, Chen TF, Juan HF, Tsai HK, Chen CY. Connecting MHC-I-binding motifs with HLA alleles via deep learning. Communications Biology. 4: 1194. PMID 34663927 DOI: 10.1038/s42003-021-02716-8   
2021 Pal S, Banerjee S, Prabhakaran EN. α-Helices Propagating from Stable Nucleators Exhibit Unconventional Thermal Folding. Febs Letters. PMID 34716991 DOI: 10.1002/1873-3468.14216   
2021 Chan HTH, Moesser MA, Walters RK, Malla TR, Twidale RM, John T, Deeks HM, Johnston-Wood T, Mikhailov V, Sessions RB, Dawson W, Salah E, Lukacik P, Strain-Damerell C, Owen CD, et al. Discovery of SARS-CoV-2 M peptide inhibitors from modelling substrate and ligand binding. Chemical Science. 12: 13686-13703. PMID 34760153 DOI: 10.1039/d1sc03628a   
2021 Kar M, Posey AE, Dar F, Hyman AA, Pappu RV. Glycine-Rich Peptides from FUS Have an Intrinsic Ability to Self-Assemble into Fibers and Networked Fibrils. Biochemistry. PMID 34648275 DOI: 10.1021/acs.biochem.1c00501   
2021 Zhao Q, Yuan JJ, Hu F, Qian C, Tian CF, Wang JT, Gao D, Yi W, Wang HB. Isolation, physicochemical, and structure-function relationship of the hydrophobic variant of Fc-fusion proteins that bind to TNF-α receptor, HS002 and HS002A. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1186: 123026. PMID 34781108 DOI: 10.1016/j.jchromb.2021.123026   
2021 Cui JB, Wei XX, Zhao R, Zhu H, Shi J, Bierer D, Li YM. Chemical synthesis of disulfide surrogate peptides by using beta-carbon dimethyl modified diaminodiacids. Organic & Biomolecular Chemistry. PMID 34611692 DOI: 10.1039/d1ob01715b   
2021 Hassankalhori M, Bolcato G, Bissaro M, Sturlese M, Moro S. Shedding Light on the Molecular Recognition of Sub-Kilodalton Macrocyclic Peptides on Thrombin by Supervised Molecular Dynamics. Frontiers in Molecular Biosciences. 8: 707661. PMID 34532343 DOI: 10.3389/fmolb.2021.707661   
2021 Loo S, Tay SV, Kam A, Tang F, Fan JS, Yang D, Tam JP. Anti-Fungal Hevein-like Peptides Biosynthesized from Quinoa Cleavable Hololectins. Molecules (Basel, Switzerland). 26. PMID 34641455 DOI: 10.3390/molecules26195909   
2021 Ono S, Naylor MR, Townsend CE, Okumura C, Okada O, Lee HW, Lokey RS. Cyclosporin A: Conformational Complexity and Chameleonicity. Journal of Chemical Information and Modeling. PMID 34672629 DOI: 10.1021/acs.jcim.1c00771   
2021 Dennison SR, Reddy SM, Morton LHG, Harris F, Badiani K, Phoenix DA. PEGylation enhances the antibacterial and therapeutic potential of amphibian host defence peptides. Biochimica Et Biophysica Acta. Biomembranes. 1864: 183806. PMID 34656552 DOI: 10.1016/j.bbamem.2021.183806   
2021 Rial R, González-Durruthy M, Somoza M, Liu Z, Ruso JM. Unraveling the Compositional and Molecular Features Involved in Lysozyme-Benzothiazole Derivative Interactions. Molecules (Basel, Switzerland). 26. PMID 34641399 DOI: 10.3390/molecules26195855   
2021 Ho TNT, Abraham N, Lewis RJ. Rigidity of loop 1 contributes to equipotency of globular and ribbon isomers of α-conotoxin AusIA. Scientific Reports. 11: 21928. PMID 34753970 DOI: 10.1038/s41598-021-01277-4   
2021 Guo L, Dutton OJ, Kucukdisli M, Davy M, Wagnières O, Butts CP, Myers EL, Aggarwal VK. Conformationally Controlled Linear and Helical Hydrocarbons Bearing Extended Side Chains. Journal of the American Chemical Society. PMID 34590479 DOI: 10.1021/jacs.1c07778   
2021 Li X, Gohain N, Chen S, Li Y, Zhao X, Li B, Tolbert WD, He W, Pazgier M, Hu H, Lu W. Design of ultrahigh-affinity and dual-specificity peptide antagonists of MDM2 and MDMX for P53 activation and tumor suppression. Acta Pharmaceutica Sinica. B. 11: 2655-2669. PMID 34589387 DOI: 10.1016/j.apsb.2021.06.010   
2021 - R, Mondal S, Pathak J, Singh PR, Singh SP, Sinha RP. Computational Studies on Photolyase (Phr) Proteins of Cyanobacteria. Canadian Journal of Microbiology. PMID 34587467 DOI: 10.1139/cjm-2021-0167   
2021 Chen Y, Fleetwood O, Pérez-Conesa S, Delemotte L. Allosteric Effect of Nanobody Binding on Ligand-Specific Active States of the β2 Adrenergic Receptor. Journal of Chemical Information and Modeling. PMID 34780174 DOI: 10.1021/acs.jcim.1c00826   
2021 Nguyen TAT, Hoang MH, Luc TT, Dang TKN, Nguyen TMT, Vo TN. Two new -kaurane-type diterpene diastereomers isolated from . Natural Product Research. 1-8. PMID 34736370 DOI: 10.1080/14786419.2021.2000412   
2021 Nagata T, Shinya S, Ohnuma T, Fukamizo T. Multi-functionality of a tryptophan residue conserved in substrate-binding groove of GH19 chitinases. Scientific Reports. 11: 2494. PMID 33510258 DOI: 10.1038/s41598-021-81903-3