cached image

Geoffrey M. Cooper - Related publications

Biology Boston University, Boston, MA, United States 
Cancer Research
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Jin XH, Zhang YF, Yuan YX, Han L, Zhang GP, Hu H. Isolation, characterization and transcriptome analysis of porcine deltacoronavirus strain HNZK-02 from Henan Province, China. Molecular Immunology. 134: 86-99. PMID 33740580 DOI: 10.1016/j.molimm.2021.03.006   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Górska AM, Gouveia P, Borba AR, Zimmermann A, Serra TS, Carvalho P, Lourenço TF, Oliveira MM, Peterhänsel C, Saibo NJM. ZmOrphan94 Transcription Factor Downregulates Gene Expression in Maize Bundle Sheath Cells. Frontiers in Plant Science. 12: 559967. PMID 33897718 DOI: 10.3389/fpls.2021.559967   
2021 Fan K, Moore JE, Zhang XO, Weng Z. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes. Nucleic Acids Research. PMID 33978759 DOI: 10.1093/nar/gkab345   
2021 Galbraith MD, Andrysik Z, Sullivan KD, Espinosa JM. Global Analyses to Identify Direct Transcriptional Targets of p53. Methods in Molecular Biology (Clifton, N.J.). 2267: 19-56. PMID 33786783 DOI: 10.1007/978-1-0716-1217-0_3   
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Shen J, Zhang H, Lu C, Gu J, Zhang Y, Hu J. Microarray analysis of the time-dependent expression profiles of long non-coding RNAs in the progression of vein graft stenotic disease. Experimental and Therapeutic Medicine. 21: 635. PMID 33968166 DOI: 10.3892/etm.2021.10067   
2021 Cui X, Gao K, Wang L, Lv M, Li Z, Zheng D, Wu W, Yao W, Ding L, Li X, Zhu JK, Zhang H. General Control Non-derepressible 1 (AtGCN1) Is Important for Flowering Time, Plant Growth, Seed Development, and the Transcription/Translation of Specific Genes in . Frontiers in Plant Science. 12: 630311. PMID 33868334 DOI: 10.3389/fpls.2021.630311   
2021 Reed F, Larsuel ST, Mayday MY, Scanlon V, Krause DS. MRTFA: a critical protein in normal and malignant hematopoiesis and beyond. The Journal of Biological Chemistry. 100543. PMID 33722605 DOI: 10.1016/j.jbc.2021.100543   
2021 Panigrahi A, O'Malley BW. Mechanisms of enhancer action: the known and the unknown. Genome Biology. 22: 108. PMID 33858480 DOI: 10.1186/s13059-021-02322-1   
2021 Cao R, Liu S, Zhang J, Ren X, Chen X, Cheng B, Xia J. Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma. Frontiers in Genetics. 12: 630794. PMID 33897760 DOI: 10.3389/fgene.2021.630794   
2021 Choi J, Lysakovskaia K, Stik G, Demel C, Söding J, Tian TV, Graf T, Cramer P. Evidence for additive and synergistic action of mammalian enhancers during cell fate determination. Elife. 10. PMID 33770473 DOI: 10.7554/eLife.65381   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Gray DH, Villegas I, Long J, Santos J, Keir A, Abele A, Kuo CY, Kohn DB. Optimizing Integration and Expression of Transgenic Bruton's Tyrosine Kinase for CRISPR-Cas9-Mediated Gene Editing of X-Linked Agammaglobulinemia. The Crispr Journal. 4: 191-206. PMID 33876953 DOI: 10.1089/crispr.2020.0080   
2021 Casas-Tintó S, Ferrús A. The haplolethality paradox of the wupA gene in Drosophila. Plos Genetics. 17: e1009108. PMID 33739971 DOI: 10.1371/journal.pgen.1009108   
2021 Du H, Zaman S, Hu S, Che S. Single-Molecule Long-Read Sequencing of Purslane () and Differential Gene Expression Related with Biosynthesis of Unsaturated Fatty Acids. Plants (Basel, Switzerland). 10. PMID 33808162 DOI: 10.3390/plants10040655   
2021 Aladdin A, Sahly N, Faty R, Youssef MM, Salem TZ. The baculovirus promoter OpIE2 sequence has inhibitory effect on the activity of the cytomegalovirus (CMV) promoter in HeLa and HEK-293 T cells. Gene. 781: 145541. PMID 33667607 DOI: 10.1016/j.gene.2021.145541   
2021 Akinci E, Hamilton MC, Khowpinitchai B, Sherwood RI. Using CRISPR to understand and manipulate gene regulation. Development (Cambridge, England). 148. PMID 33913466 DOI: 10.1242/dev.182667   
2021 Liu Z, Wang Y, Yuan S, Wen F, Liu J, Zou L, Zhang J. Regulatory role of long non-coding RNA UCA1 in signaling pathways and its clinical applications. Oncology Letters. 21: 404. PMID 33777227 DOI: 10.3892/ol.2021.12665   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Gomes SC, Ferreira MR, Tavares AF, Silva IN, Becker JD, Moreira LM. A histone-like nucleoid structuring protein regulates several virulence traits in . Applied and Environmental Microbiology. PMID 33931418 DOI: 10.1128/AEM.00369-21   
2021 Marand AP, Chen Z, Gallavotti A, Schmitz RJ. A cis-regulatory atlas in maize at single-cell resolution. Cell. PMID 33964211 DOI: 10.1016/j.cell.2021.04.014   
2021 Singh D, Yi SV. Enhancer pleiotropy, gene expression, and the architecture of human enhancer-gene interactions. Molecular Biology and Evolution. PMID 33749795 DOI: 10.1093/molbev/msab085   
2021 Li WF, Kang Y, Zhang Y, Zang QL, Qi LW. Concerted control of the LaRAV1-LaCDKB1;3 module by temperature during dormancy release and reactivation of larch. Tree Physiology. PMID 33847364 DOI: 10.1093/treephys/tpab052   
2021 Patel YD, Brown AJ, Zhu J, Rosignoli G, Gibson SJ, Hatton D, James DC. Control of Multigene Expression Stoichiometry in Mammalian Cells Using Synthetic Promoters. Acs Synthetic Biology. PMID 33939428 DOI: 10.1021/acssynbio.0c00643   
2021 Miao Z, Balzer MS, Ma Z, Liu H, Wu J, Shrestha R, Aranyi T, Kwan A, Kondo A, Pontoglio M, Kim J, Li M, Kaestner KH, Susztak K. Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets. Nature Communications. 12: 2277. PMID 33859189 DOI: 10.1038/s41467-021-22266-1   
2021 Xie J, Deng Z, Alahdal M, Liu J, Zhao Z, Chen X, Wang G, Hu X, Duan L, Wang D, Li W. Screening and verification of hub genes involved in osteoarthritis using bioinformatics. Experimental and Therapeutic Medicine. 21: 330. PMID 33732303 DOI: 10.3892/etm.2021.9761   
2021 Bacher S, Meier-Soelch J, Kracht M, Schmitz ML. Regulation of Transcription Factor NF-κB in Its Natural Habitat: The Nucleus. Cells. 10. PMID 33805563 DOI: 10.3390/cells10040753   
2021 Chen Z, Yang Z, Yuan X, Zhang X, Hao P. scSensitiveGeneDefine: sensitive gene detection in single-cell RNA sequencing data by Shannon entropy. Bmc Bioinformatics. 22: 211. PMID 33888056 DOI: 10.1186/s12859-021-04136-1   
2021 Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. The Plant Journal : For Cell and Molecular Biology. PMID 33788333 DOI: 10.1111/tpj.15256   
2021 Weiss CV, Harshman L, Inoue F, Fraser HB, Petrov DA, Ahituv N, Gokhman D. The -regulatory effects of modern human-specific variants. Elife. 10. PMID 33885362 DOI: 10.7554/eLife.63713   
2021 Xue W, Zheng X, Hu X, Zhang Y. Research and Clinical Significance of the Differentially Expressed Genes TP63 and LMO4 in Human Immunodeficiency Virus-Related Penile Squamous Cell Carcinoma. American Journal of Men's Health. 15: 15579883211011380. PMID 33906487 DOI: 10.1177/15579883211011380   
2021 Tian S, Zhang H, Zhang P, Kalmbach M, Lee JH, Ordog T, Hampel PJ, Call TG, Witzig TE, Kay NE, Klee EW, Slager SL, Yan H, Ding W. Epigenetic alteration contributes to the transcriptional reprogramming in T-cell prolymphocytic leukemia. Scientific Reports. 11: 8318. PMID 33859327 DOI: 10.1038/s41598-021-87890-9   
2021 Qiao Y, Zhang B, Liu Y. Identification of Potential Diagnostic Gene Targets for Pediatric Sepsis Based on Bioinformatics and Machine Learning. Frontiers in Pediatrics. 9: 576585. PMID 33748037 DOI: 10.3389/fped.2021.576585   
2021 Trinh BQ, Ummarino S, Zhang Y, Ebralidze AK, Bassal MA, Nguyen TM, Heller G, Coffey R, Tenen DE, van der Kouwe E, Fabiani E, Gurnari C, Wu CS, Espinosa Angarcia VE, Yang H, et al. Myeloid lncRNA LOUP Mediates Opposing Regulatory Effects of RUNX1 and RUNX1-ETO in t(8;21) AML. Blood. PMID 33971010 DOI: 10.1182/blood.2020007920   
2021 Chen C, Li Y, Zhang H, Ma Q, Wei Z, Chen J, Sun Z. Genome-Wide Analysis of the RAV Transcription Factor Genes in Rice Reveals Their Response Patterns to Hormones and Virus Infection. Viruses. 13. PMID 33922971 DOI: 10.3390/v13050752   
2021 Khan I, Khan S, Zhang Y, Zhou J. Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). Planta. 253: 101. PMID 33856565 DOI: 10.1007/s00425-021-03627-y   
2021 Zhu I, Song W, Ovcharenko I, Landsman D. A model of active transcription hubs that unifies the roles of active promoters and enhancers. Nucleic Acids Research. PMID 33872375 DOI: 10.1093/nar/gkab235   
2021 Kitajima K, Kawahira N, Lee S, Tamura K, Morishita Y, Ohtsuka D. Light-induced local gene expression in primary chick cell culture system. Development, Growth & Differentiation. PMID 33733477 DOI: 10.1111/dgd.12721   
2021 Wang L, Man S, Bian Y. Bioinformatics analysis of biomarkers of aristolochic acid-induced early nephrotoxicity in embryonic stem cells. Experimental and Therapeutic Medicine. 21: 508. PMID 33791017 DOI: 10.3892/etm.2021.9939   
2021 Bhatia S, Kumar H, Mahajan M, Yadav S, Saini P, Yadav S, Sahu SK, Sundaram JK, Yadav RK. A cellular expression map of epidermal and subepidermal cell layer-enriched transcription factor genes integrated with the regulatory network in Arabidopsis shoot apical meristem. Plant Direct. 5: e00306. PMID 33748654 DOI: 10.1002/pld3.306   
2021 Hwang S, Lee N, Choe D, Lee Y, Kim W, Jeong Y, Cho S, Palsson BO, Cho BK. Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome. Msystems. 6. PMID 33947798 DOI: 10.1128/mSystems.01013-20   
2021 Haellman V, Saxena P, Jiang Y, Fussenegger M. Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells. Metabolic Engineering. 65: 99-110. PMID 33744461 DOI: 10.1016/j.ymben.2021.03.009   
2021 Meng X, Cui J, He G. Bcl-2 Is Involved in Cardiac Hypertrophy through PI3K-Akt Pathway. Biomed Research International. 2021: 6615502. PMID 33778070 DOI: 10.1155/2021/6615502   
2021 Wang Y, Liu A. Genomic Characterization and Expression Analysis of the SnRK Family Genes in Kimura et Migo (Orchidaceae). Plants (Basel, Switzerland). 10. PMID 33802577 DOI: 10.3390/plants10030479   
2021 Wen YL, Li Y, Zhu G, Zheng Z, Shi M, Qin S. Gene Expression Profiling and Biofunction Analysis of HepG2 Cells Targeted by Crocetin. Mediators of Inflammation. 2021: 5512166. PMID 33867857 DOI: 10.1155/2021/5512166   
2021 Peña JM, Prezioso SM, McFarland KA, Kambara TK, Ramsey KM, Deighan P, Dove SL. Control of a programmed cell death pathway in Pseudomonas aeruginosa by an antiterminator. Nature Communications. 12: 1702. PMID 33731715 DOI: 10.1038/s41467-021-21941-7   
2021 Huang SK, Tripathi P, Koneva LA, Cavalcante RG, Craig N, Scruggs AM, Sartor MA, Deng F, Chen Y. Effect of concentration and duration of particulate matter exposure on the transcriptome and DNA methylome of bronchial epithelial cells. Environmental Epigenetics. 7: dvaa022. PMID 33692908 DOI: 10.1093/eep/dvaa022   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235