Anton Goloborodko - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
3D genome structure; biophysics

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 AlHaj Abed J, Erceg J, Goloborodko A, Nguyen SC, McCole RB, Saylor W, Fudenberg G, Lajoie BR, Dekker J, Mirny LA, Wu CT. Highly structured homolog pairing reflects functional organization of the Drosophila genome. Nature Communications. 10: 4485. PMID 31582763 DOI: 10.1038/S41467-019-12208-3  0.68
2019 Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, et al. The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos. Nature Communications. 10: 4486. PMID 31582744 DOI: 10.1038/S41467-019-12211-8  0.68
2018 Fudenberg G, Abdennur N, Imakaev M, Goloborodko A, Mirny LA. Emerging Evidence of Chromosome Folding by Loop Extrusion. Cold Spring Harbor Symposia On Quantitative Biology. PMID 29728444 DOI: 10.1101/Sqb.2017.82.034710  0.68
2018 Gibcus JH, Samejima K, Goloborodko A, Samejima I, Naumova N, Nuebler J, Kanemaki MT, Xie L, Paulson JR, Earnshaw WC, Mirny LA, Dekker J. A pathway for mitotic chromosome formation. Science (New York, N.Y.). PMID 29348367 DOI: 10.1126/Science.Aao6135  0.68
2017 Schwarzer W, Abdennur N, Goloborodko A, Pekowska A, Fudenberg G, Loe-Mie Y, Fonseca NA, Huber W, H Haering C, Mirny L, Spitz F. Two independent modes of chromatin organization revealed by cohesin removal. Nature. 551: 51-56. PMID 29094699 DOI: 10.1038/Nature24281  0.68
2017 Schalbetter SA, Goloborodko A, Fudenberg G, Belton JM, Miles C, Yu M, Dekker J, Mirny L, Baxter J. SMC complexes differentially compact mitotic chromosomes according to genomic context. Nature Cell Biology. PMID 28825700 DOI: 10.1038/Ncb3594  0.68
2017 Nora EP, Goloborodko A, Valton AL, Gibcus JH, Uebersohn A, Abdennur N, Dekker J, Mirny LA, Bruneau BG. Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization. Cell. 169: 930-944.e22. PMID 28525758 DOI: 10.1016/J.Cell.2017.05.004  0.68
2016 Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ. Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome. Nature Methods. PMID 27723753 DOI: 10.1038/Nmeth.4025  0.36
2016 Sawai CM, Babovic S, Upadhaya S, Knapp DJ, Lavin Y, Lau CM, Goloborodko A, Feng J, Fujisaki J, Ding L, Mirny LA, Merad M, Eaves CJ, Reizis B. Hematopoietic Stem Cells Are the Major Source of Multilineage Hematopoiesis in Adult Animals. Immunity. PMID 27590115 DOI: 10.1016/J.Immuni.2016.08.007  0.36
2016 Goloborodko A, Marko JF, Mirny LA. Chromosome Compaction by Active Loop Extrusion. Biophysical Journal. 110: 2162-2168. PMID 27224481 DOI: 10.1016/J.Bpj.2016.02.041  0.68
2016 Fudenberg G, Imakaev M, Lu C, Goloborodko A, Abdennur N, Mirny LA. Formation of Chromosomal Domains by Loop Extrusion. Cell Reports. PMID 27210764 DOI: 10.1016/J.Celrep.2016.04.085  0.68
2016 Goloborodko A, Imakaev MV, Marko JF, Mirny L. Compaction and segregation of sister chromatids via active loop extrusion. Elife. 5. PMID 27192037 DOI: 10.7554/Elife.14864  0.44
2015 Tarasova IA, Goloborodko AA, Perlova TY, Pridatchenko ML, Gorshkov AV, Evreinov VV, Ivanov AR, Gorshkov MV. Application of Statistical Thermodynamics To Predict the Adsorption Properties of Polypeptides in Reversed-Phase HPLC. Analytical Chemistry. PMID 26023813 DOI: 10.1021/acs.analchem.5b00595  0.36
2012 Imakaev M, Fudenberg G, McCord RP, Naumova N, Goloborodko A, Lajoie BR, Dekker J, Mirny LA. Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nature Methods. 9: 999-1003. PMID 22941365 DOI: 10.1038/Nmeth.2148  0.36
2012 Moskovets E, Goloborodko AA, Gorshkov AV, Gorshkov MV. Limitation of predictive 2-D liquid chromatography in reducing the database search space in shotgun proteomics: in silico studies. Journal of Separation Science. 35: 1771-8. PMID 22807359 DOI: 10.1002/jssc.201100798  0.36
2012 Pridatchenko ML, Perlova TY, Ben Hamidane H, Goloborodko AA, Tarasova IA, Gorshkov AV, Evreinov VV, Tsybin YO, Gorshkov MV. On the utility of predictive chromatography to complement mass spectrometry based intact protein identification. Analytical and Bioanalytical Chemistry. 402: 2521-9. PMID 21901462 DOI: 10.1007/s00216-011-5350-3  0.36
2011 Goloborodko AA, Gorshkov MV, Good DM, Zubarev RA. Sequence scrambling in shotgun proteomics is negligible. Journal of the American Society For Mass Spectrometry. 22: 1121-4. PMID 21953093 DOI: 10.1007/s13361-011-0130-z  0.36
2011 Sargaeva NP, Goloborodko AA, O'Connor PB, Moskovets E, Gorshkov MV. Sequence-specific predictive chromatography to assist mass spectrometric analysis of asparagine deamidation and aspartate isomerization in peptides. Electrophoresis. 32: 1962-9. PMID 21557257 DOI: 10.1002/Elps.201000507  0.36
2010 Perlova TY, Goloborodko AA, Margolin Y, Pridatchenko ML, Tarasova IA, Gorshkov AV, Moskovets E, Ivanov AR, Gorshkov MV. Retention time prediction using the model of liquid chromatography of biomacromolecules at critical conditions in LC-MS phosphopeptide analysis. Proteomics. 10: 3458-68. PMID 20815086 DOI: 10.1002/pmic.200900837  0.36
2010 Goloborodko AA, Mayerhofer C, Zubarev AR, Tarasova IA, Gorshkov AV, Zubarev RA, Gorshkov MV. Empirical approach to false discovery rate estimation in shotgun proteomics. Rapid Communications in Mass Spectrometry : Rcm. 24: 454-62. PMID 20069687 DOI: 10.1002/rcm.4417  0.36
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