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Wei Wang - Publications

Affiliations: 
The Hong Kong University of Science and Technology, PR China 
Area:
Machine learning, computational chemistry
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gu H, Wang W, Cao S, Unarta IC, Yao Y, Sheong FK, Huang X. RPnet: a reverse-projection-based neural network for coarse-graining metastable conformational states for protein dynamics. Physical Chemistry Chemical Physics : Pccp. PMID 34985469 DOI: 10.1039/d1cp03622j  0.399
2021 Oh J, Shin J, Unarta IC, Wang W, Feldman AW, Karadeema RJ, Xu L, Xu J, Chong J, Krishnamurthy R, Huang X, Romesberg FE, Wang D. Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nature Chemical Biology. PMID 34140682 DOI: 10.1038/s41589-021-00817-3  0.314
2021 Quinn TR, Steussy CN, Haines BE, Lei J, Wang W, Sheong FK, Stauffacher CV, Huang X, Norrby PO, Helquist P, Wiest O. Microsecond timescale MD simulations at the transition state of HMGR predict remote allosteric residues. Chemical Science. 12: 6413-6418. PMID 34084441 DOI: 10.1039/d1sc00102g  0.384
2021 Konovalov KA, Wang W, Wang G, Goonetilleke EC, Gao X, Wang D, Huang X. A Comprehensive mechanism for 5-carboxylcytosine induced transcriptional pausing revealed by Markov state models. The Journal of Biological Chemistry. 100735. PMID 33991521 DOI: 10.1016/j.jbc.2021.100735  0.333
2021 Unarta IC, Cao S, Kubo S, Wang W, Cheung PP, Gao X, Takada S, Huang X. Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33883282 DOI: 10.1073/pnas.2024324118  0.345
2020 Cao S, Montoya-Castillo A, Wang W, Markland TE, Huang X. On the advantages of exploiting memory in Markov state models for biomolecular dynamics. The Journal of Chemical Physics. 153: 014105. PMID 32640825 DOI: 10.1063/5.0010787  0.455
2019 Wang Y, Wang Y, Wu J, Liu C, Zhou Y, Mi L, Zhang Y, Wang W. PRAK Is Required for the Formation of Neutrophil Extracellular Traps. Frontiers in Immunology. 10: 1252. PMID 31231384 DOI: 10.3389/fimmu.2019.01252  0.313
2018 Konovalov KA, Wang W, Huang X. Conformational selection turns on phenylalanine hydroxylase. The Journal of Biological Chemistry. 293: 19544-19545. PMID 30578407 DOI: 10.1074/Jbc.H118.006676  0.409
2018 Wang W, Liang T, Sheong FK, Fan X, Huang X. An efficient Bayesian kinetic lumping algorithm to identify metastable conformational states via Gibbs sampling. The Journal of Chemical Physics. 149: 072337. PMID 30134698 DOI: 10.1063/1.5027001  0.534
2018 Peng J, Wang W, Yu Y, Gu H, Huang X. Clustering algorithms to analyze molecular dynamics simulation trajectories for complex chemical and biological systems Chinese Journal of Chemical Physics. 31: 404-420. DOI: 10.1063/1674-0068/31/Cjcp1806147  0.556
2017 Wang W, Cao S, Zhu L, Huang X. Constructing Markov State Models to elucidate the functional conformational changes of complex biomolecules Wires Computational Molecular Science. 8. DOI: 10.1002/Wcms.1343  0.573
2016 Liu S, Zhu L, Sheong FK, Wang W, Huang X. Adaptive partitioning by local density-peaks: An efficient density-based clustering algorithm for analyzing molecular dynamics trajectories. Journal of Computational Chemistry. PMID 27868222 DOI: 10.1002/Jcc.24664  0.67
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