Junhui Peng - Publications

HKUST, Newark, New Territories, Hong Kong 
MD simulation

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Peng J, Yuan C, Hua X, Zhang Z. Molecular mechanism of histone variant H2A.B on stability and assembly of nucleosome and chromatin structures. Epigenetics & Chromatin. 13: 28. PMID 32664941 DOI: 10.1186/s13072-020-00351-x  1
2020 Pan C, Liu C, Peng J, Ren P, Huang X. Three-site and five-site fixed-charge water models compatible with AMOEBA force field. Journal of Computational Chemistry. PMID 31976572 DOI: 10.1002/jcc.26151  0.88
2019 Zhang J, Zhang A, Li J, Li F, Peng J. Gray Correlation Analysis and Prediction on Permanent Deformation of Subgrade Filled with Construction and Demolition Materials. Materials (Basel, Switzerland). 12. PMID 31546757 DOI: 10.3390/ma12183035  0.84
2019 Yang Y, Dong Z, Hu H, Peng J, Sheng Y, Tong Y, Yuan S, Li Z, Yang J, Wells T, Qu Y, Farrell NP, Liu Y. The facile and visualizable identification of broad-spectrum inhibitors of MDM2/p53 using co-expressed protein complexes. The Analyst. PMID 31089613 DOI: 10.1039/c9an00350a  0.48
2019 Peng J, Yuan C, Ma R, Zhang Z. Backmapping from Multiresolution Coarse-Grained Models to Atomic Structures of Large Biomolecules by Restrained Molecular Dynamics Simulations using Bayesian Inference. Journal of Chemical Theory and Computation. PMID 30908042 DOI: 10.1021/acs.jctc.9b00062  1
2019 Zhang J, Liu Q, Wu W, Peng J, Zhang H, Song F, He B, Wang X, Sung HH, Chen M, Li BS, Liu SH, Lam JWY, Tang BZ. Real-Time Monitoring of Hierarchical Self-Assembly and Induction of Circularly Polarized Luminescence from Achiral Luminogens. Acs Nano. PMID 30835442 DOI: 10.1021/acsnano.9b00218  0.8
2018 Xu D, Ma R, Zhang J, Liu Z, Wu B, Peng J, Zhai Y, Gong Q, Shi Y, Wu J, Wu Q, Zhang Z, Ruan K. Dynamic Nature of CTCF Tandem 11 Zinc Fingers in Multivalent Recognition of DNA as Revealed by NMR Spectroscopy. The Journal of Physical Chemistry Letters. PMID 29965776 DOI: 10.1021/acs.jpclett.8b01440  1
2017 Xu L, Wang L, Peng J, Li F, Wu L, Zhang B, Lv M, Zhang J, Gong Q, Zhang R, Zuo X, Zhang Z, Wu J, Tang Y, Shi Y. Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions. Structure (London, England : 1993). PMID 29107486 DOI: 10.1016/j.str.2017.09.013  1
2017 Cheng P, Peng J, Zhang Z. SAXS-Oriented Ensemble Refinement of Flexible Biomolecules. Biophysical Journal. 112: 1295-1301. PMID 28402873 DOI: 10.1016/j.bpj.2017.02.024  1
2017 Chen C, Gu P, Wu J, Chen X, Niu S, Sun H, Wu L, Li N, Peng J, Shi S, Fan C, Huang M, Wong CC, Gong Q, Kumar-Sinha C, et al. Structural insights into POT1-TPP1 interaction and POT1 C-terminal mutations in human cancer. Nature Communications. 8: 14929. PMID 28393832 DOI: 10.1038/ncomms14929  0.84
2016 Lv M, Wang C, Li F, Peng J, Wen B, Gong Q, Shi Y, Tang Y. Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy. Protein & Cell. PMID 27757847 DOI: 10.1007/s13238-016-0328-8  0.72
2016 Peng J, Zhang Z. Unraveling low-resolution structural data of large biomolecules by constructing atomic models with experiment-targeted parallel cascade selection simulations. Scientific Reports. 6: 29360. PMID 27377017 DOI: 10.1038/srep29360  1
2016 Ling S, Wang W, Yu L, Peng J, Cai X, Xiong Y, Hayati Z, Zhang L, Zhang Z, Song L, Tian C. Structure of an E. coli integral membrane sulfurtransferase and its structural transition upon SCN(-) binding defined by EPR-based hybrid method. Scientific Reports. 6: 20025. PMID 26817826 DOI: 10.1038/srep20025  0.72
2015 Jia N, Liu N, Cheng W, Jiang YL, Sun H, Chen LL, Peng J, Zhang Y, Ding YH, Zhang ZH, Wang X, Cai G, Wang J, Dong MQ, Zhang Z, et al. Structural basis for receptor recognition and pore formation of a zebrafish aerolysin-like protein. Embo Reports. PMID 26711430 DOI: 10.15252/embr.201540851  0.72
2015 Hu HX, Jiang YL, Zhao MX, Cai K, Liu S, Wen B, Lv P, Zhang Y, Peng J, Zhong H, Yu HM, Ren YM, Zhang Z, Tian C, Wu Q, et al. Structural insights into HetR-PatS interaction involved in cyanobacterial pattern formation. Scientific Reports. 5: 16470. PMID 26576507 DOI: 10.1038/srep16470  1
2015 Zhang Y, Wen B, Peng J, Zuo X, Gong Q, Zhang Z. Determining structural ensembles of flexible multi-domain proteins using small-angle X-ray scattering and molecular dynamics simulations. Protein & Cell. 6: 619-23. PMID 25944044 DOI: 10.1007/s13238-015-0162-4  1
2015 Chen P, Liu Z, Wang X, Peng J, Sun Q, Li J, Wang M, Niu L, Zhang Z, Cai G, Teng M, Li X. Crystal and EM structures of human phosphoribosyl pyrophosphate synthase I (PRS1) provide novel insights into the disease-associated mutations. Plos One. 10: e0120304. PMID 25781187 DOI: 10.1371/journal.pone.0120304  1
2014 Peng J, Zhang Z. Simulating Large-Scale Conformational Changes of Proteins by Accelerating Collective Motions Obtained from Principal Component Analysis. Journal of Chemical Theory and Computation. 10: 3449-58. PMID 26588312 DOI: 10.1021/ct5000988  1
2014 Wen B, Peng J, Zuo X, Gong Q, Zhang Z. Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations. Biophysical Journal. 107: 956-64. PMID 25140431 DOI: 10.1016/j.bpj.2014.07.005  1
2014 Zou Y, Shao Z, Peng J, Li F, Gong D, Wang C, Zuo X, Zhang Z, Wu J, Shi Y, Gong Q. Crystal structure of triple-BRCT-domain of ECT2 and insights into the binding characteristics to CYK-4. Febs Letters. 588: 2911-20. PMID 25068414 DOI: 10.1016/j.febslet.2014.07.019  1
2014 Zhao D, Wang X, Peng J, Wang C, Li F, Sun Q, Zhang Y, Zhang J, Cai G, Zuo X, Wu J, Shi Y, Zhang Z, Gong Q. Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin. Journal of Structural Biology. 187: 194-205. PMID 24878663 DOI: 10.1016/j.jsb.2014.05.009  1
2014 Wang C, Zhu Y, Caceres TB, Liu L, Peng J, Wang J, Chen J, Chen X, Zhang Z, Zuo X, Gong Q, Teng M, Hevel JM, Wu J, Shi Y. Structural determinants for the strict monomethylation activity by trypanosoma brucei protein arginine methyltransferase 7. Structure (London, England : 1993). 22: 756-68. PMID 24726341 DOI: 10.1016/j.str.2014.03.003  1
2014 Wang J, Qin S, Li F, Li S, Zhang W, Peng J, Zhang Z, Gong Q, Wu J, Shi Y. Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding. Cell Research. 24: 890-3. PMID 24675531 DOI: 10.1038/cr.2014.38  1
2014 Wang C, Zhu Y, Chen J, Li X, Peng J, Chen J, Zou Y, Zhang Z, Jin H, Yang P, Wu J, Niu L, Gong Q, Teng M, Shi Y. Crystal structure of arginine methyltransferase 6 from Trypanosoma brucei. Plos One. 9: e87267. PMID 24498306 DOI: 10.1371/journal.pone.0087267  1
2014 Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q. Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. Nucleic Acids Research. 42: 509-25. PMID 24081582 DOI: 10.1093/nar/gkt869  1
2012 Wu B, Wang F, Zhang J, Zhang Z, Qin L, Peng J, Li F, Liu J, Lu G, Gong Q, Yao X, Wu J, Shi Y. Identification and structural basis for a novel interaction between Vav2 and Arap3. Journal of Structural Biology. 180: 84-95. PMID 22750419 DOI: 10.1016/j.jsb.2012.06.011  1
2012 Zhong X, Guo J, Wang L, Luo D, Bei W, Chen Y, Yan K, Peng J. Analysis of the Constituents in Rat Serum after Oral Administration of Fufang Zhenzhu Tiaozhi Capsule by UPLC-Q-TOF-MS/MS. Chromatographia. 75: 111-129. PMID 22307991 DOI: 10.1007/s10337-011-2164-6  0.4
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