Jianwen Fang, Ph.D. - Publications

Affiliations: 
2000 Wayne State University, Detroit, MI, United States 
Area:
Organic Chemistry

3/70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Li Y, Zhang J, Tai D, Middaugh CR, Zhang Y, Fang J. PROTS: a fragment based protein thermo-stability potential. Proteins. 80: 81-92. PMID 21976375 DOI: 10.1002/prot.23163  0.32
2004 Xian M, Fatima Z, Zhang W, Fang J, Li H, Pei D, Loo J, Stevenson T, Wang PG. Identification of alpha-galactosyl epitope mimetics through rapid generation and screening of C-linked glycopeptide library. Journal of Combinatorial Chemistry. 6: 126-34. PMID 14714996 DOI: 10.1021/cc030042u  0.32
2002 Zhang J, Kowal P, Fang J, Andreana P, Wang PG. Efficient chemoenzymatic synthesis of globotriose and its derivatives with a recombinant alpha-(1-->4)-galactosyltransferase. Carbohydrate Research. 337: 969-76. PMID 12039536  0.32
Low-probability matches
2017 Luo D, Wang SL, Fang J, Zhang W. MIMPFC: Identifying miRNA-mRNA regulatory modules by combining phase-only correlation and improved rough-fuzzy clustering. Journal of Bioinformatics and Computational Biology. 1750028. PMID 29281954 DOI: 10.1142/S0219720017500287  0.04
2017 Pei C, Wang SL, Fang J, Zhang W. GSMC: Combining Parallel Gibbs Sampling with Maximal Cliques for Hunting DNA Motif. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29116820 DOI: 10.1089/cmb.2017.0100  0.04
2013 Hanzlik RP, Koen YM, Fang J. Bioinformatic analysis of 302 reactive metabolite target proteins. Which ones are important for cell death? Toxicological Sciences : An Official Journal of the Society of Toxicology. 135: 390-401. PMID 23897987 DOI: 10.1093/toxsci/kft166  0.04
2013 Thomas AM, Hart SN, Li G, Lu H, Fang Y, Fang J, Zhong XB, Guo GL. Hepatocyte nuclear factor 4 alpha and farnesoid X receptor co-regulates gene transcription in mouse livers on a genome-wide scale. Pharmaceutical Research. 30: 2188-98. PMID 23462932 DOI: 10.1007/s11095-013-1006-7  0.04
2010 Thomas AM, Hart SN, Kong B, Fang J, Zhong XB, Guo GL. Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine. Hepatology (Baltimore, Md.). 51: 1410-9. PMID 20091679 DOI: 10.1002/hep.23450  0.04
2010 Jiang L, Fang J, Moore DS, Gogichaeva NV, Galeva NA, Michaelis ML, Zaidi A. Age-associated changes in synaptic lipid raft proteins revealed by two-dimensional fluorescence difference gel electrophoresis. Neurobiology of Aging. 31: 2146-59. PMID 19118924 DOI: 10.1016/j.neurobiolaging.2008.11.005  0.04
2009 Li QS, Cai S, Fang J, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL. Evaluation of NAD(H) analogues as selective inhibitors for Trypanosoma cruzi S-adenosylhomocysteine hydrolase. Nucleosides, Nucleotides & Nucleic Acids. 28: 473-84. PMID 20183597 DOI: 10.1080/15257770903044572  0.04
2009 Liu S, Tang W, Fang J, Ren J, Li H, Xiao Z, Quarles LD. Novel regulators of Fgf23 expression and mineralization in Hyp bone. Molecular Endocrinology (Baltimore, Md.). 23: 1505-18. PMID 19556340 DOI: 10.1210/me.2009-0085  0.04
2009 Fang J, Koen YM, Hanzlik RP. Bioinformatic analysis of xenobiotic reactive metabolite target proteins and their interacting partners. Bmc Chemical Biology. 9: 5. PMID 19523227 DOI: 10.1186/1472-6769-9-5  0.04
2009 Hanzlik RP, Fang J, Koen YM. Filling and mining the reactive metabolite target protein database. Chemico-Biological Interactions. 179: 38-44. PMID 18823962 DOI: 10.1016/j.cbi.2008.08.016  0.04
2008 Chen XW, Han B, Fang J, Haasl RJ. Large-scale Protein-Protein Interaction prediction using novel kernel methods. International Journal of Data Mining and Bioinformatics. 2: 145-56. PMID 18767352 DOI: 10.1504/IJDMB.2008.019095  0.04
2008 Silva RA, Huang R, Morris J, Fang J, Gracheva EO, Ren G, Kontush A, Jerome WG, Rye KA, Davidson WS. Structure of apolipoprotein A-I in spherical high density lipoproteins of different sizes. Proceedings of the National Academy of Sciences of the United States of America. 105: 12176-81. PMID 18719128 DOI: 10.1073/pnas.0803626105  0.04
2008 Tubb MR, Silva RA, Fang J, Tso P, Davidson WS. A three-dimensional homology model of lipid-free apolipoprotein A-IV using cross-linking and mass spectrometry. The Journal of Biological Chemistry. 283: 17314-23. PMID 18430727 DOI: 10.1074/jbc.M800036200  0.04
2008 Hu C, Fang J, Borchardt RT, Schowen RL, Kuczera K. Molecular dynamics simulations of domain motions of substrate-free S-adenosyl- L-homocysteine hydrolase in solution. Proteins. 71: 131-43. PMID 17932938 DOI: 10.1002/prot.21664  0.04
2007 Wickstrum JR, Skredenske JM, Kolin A, Jin DJ, Fang J, Egan SM. Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain. Journal of Bacteriology. 189: 4984-93. PMID 17513476 DOI: 10.1128/JB.00530-07  0.04
2007 Sang Y, Teresa Ortega M, Rune K, Xiau W, Zhang G, Soulages JL, Lushington GH, Fang J, Williams TD, Blecha F, Melgarejo T. Canine cathelicidin (K9CATH): gene cloning, expression, and biochemical activity of a novel pro-myeloid antimicrobial peptide. Developmental and Comparative Immunology. 31: 1278-96. PMID 17462733 DOI: 10.1016/j.dci.2007.03.007  0.04
2007 Hanzlik RP, Koen YM, Theertham B, Dong Y, Fang J. The reactive metabolite target protein database (TPDB)--a web-accessible resource. Bmc Bioinformatics. 8: 95. PMID 17367530 DOI: 10.1186/1471-2105-8-95  0.04
2007 Suprenant KA, Bloom N, Fang J, Lushington G. The major vault protein is related to the toxic anion resistance protein (TelA) family Journal of Experimental Biology. 210: 946-955. PMID 17337707 DOI: 10.1242/jeb.001800  0.04
2006 Fang J, Dong Y, Lushington GH, Ye QZ, Georg GI. Support vector machines in HTS data mining: Type I MetAPs inhibition study. Journal of Biomolecular Screening. 11: 138-44. PMID 16418315 DOI: 10.1177/1087057105284334  0.04
2005 Fang J, Haasl RJ, Dong Y, Lushington GH. Discover protein sequence signatures from protein-protein interaction data. Bmc Bioinformatics. 6: 277. PMID 16305745 DOI: 10.1186/1471-2105-6-277  0.04
2005 Silva RAGD, Hilliard GM, Fang J, Macha S, Davidson WS. A three-dimensional molecular model of lipid-free apolipoprotein A-I determined by cross-linking/mass spectrometry and sequence threading Biochemistry. 44: 2759-2769. PMID 15723520 DOI: 10.1021/bi047717+  0.04
2020 Palmisano A, Krushkal J, Li MC, Fang J, Sonkin D, Wright G, Yee L, Zhao Y, McShane L. Bioinformatics Tools and Resources for Cancer Immunotherapy Study. Methods in Molecular Biology (Clifton, N.J.). 2055: 649-678. PMID 31502173 DOI: 10.1007/978-1-4939-9773-2_29  0.01
2019 Fang J. A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation. Briefings in Bioinformatics. PMID 31273374 DOI: 10.1093/bib/bbz071  0.01
2019 Evans DM, Fang J, Silvers T, Delosh R, Laudeman J, Ogle C, Reinhart R, Selby M, Bowles L, Connelly J, Harris E, Krushkal J, Rubinstein L, Doroshow JH, Teicher BA. Exposure time versus cytotoxicity for anticancer agents. Cancer Chemotherapy and Pharmacology. PMID 31102023 DOI: 10.1007/s00280-019-03863-w  0.01
2019 Elhai JD, Yang H, Fang J, Bai X, Hall BJ. Depression and anxiety symptoms are related to problematic smartphone use severity in Chinese young adults: Fear of missing out as a mediator. Addictive Behaviors. PMID 31030950 DOI: 10.1016/j.addbeh.2019.04.020  0.01
2018 Monks A, Zhao Y, Hose C, Hamed H, Krushkal J, Fang J, Sonkin D, Palmisano A, Polley EC, Fogli LK, Konaté MM, Miller SB, Simpson MA, Voth AR, Li MC, et al. The NCI Transcriptional Pharmacodynamics Workbench: a tool to examine dynamic expression profiling of therapeutic response in the NCI-60 cell line panel. Cancer Research. PMID 30355619 DOI: 10.1158/0008-5472.CAN-18-0989  0.01
2018 Fang J. Tightly Integrated Genomic and Epigenomic Data Mining Using Tensor Decomposition. Bioinformatics (Oxford, England). PMID 29939222 DOI: 10.1093/bioinformatics/bty513  0.01
2017 Bender J, Fang J, Simon R. A computational study of the inhibition mechanisms of P-glycoprotein mediated paclitaxel efflux by kinase inhibitors. Bmc Systems Biology. 11: 108. PMID 29162114 DOI: 10.1186/s12918-017-0498-x  0.01
2016 Wang Y, Fang J, Chen S. Inferences of drug responses in cancer cells from cancer genomic features and compound chemical and therapeutic properties. Scientific Reports. 6: 32679. PMID 27645580 DOI: 10.1038/srep32679  0.01
2016 Wahome N, Sully E, Singer C, Thomas JC, Hu L, Joshi SB, Volkin DB, Fang J, Karanicolas J, Jacobs DJ, Mantis NJ, Middaugh CR. Novel Ricin Subunit Antigens With Enhanced Capacity to Elicit Toxin-Neutralizing Antibody Responses in Mice. Journal of Pharmaceutical Sciences. PMID 26987947 DOI: 10.1016/j.xphs.2016.02.009  0.01
2015 Saeedipour S, Tai D, Fang J. ChemCom: A Software Program for Searching and Comparing Chemical Libraries. Journal of Chemical Information and Modeling. 55: 1292-6. PMID 26067384 DOI: 10.1021/ci500713s  0.01
2014 Wang SL, Sun L, Fang J. Molecular cancer classification using a meta-sample-based regularized robust coding method. Bmc Bioinformatics. 15: S2. PMID 25473795 DOI: 10.1186/1471-2105-15-S15-S2  0.01
2014 Zhan L, Liu HX, Fang Y, Kong B, He Y, Zhong XB, Fang J, Wan YJ, Guo GL. Genome-wide binding and transcriptome analysis of human farnesoid X receptor in primary human hepatocytes. Plos One. 9: e105930. PMID 25198545 DOI: 10.1371/journal.pone.0105930  0.01
2013 Fang Y, Gao S, Tai D, Middaugh CR, Fang J. Identification of properties important to protein aggregation using feature selection. Bmc Bioinformatics. 14: 314. PMID 24165390 DOI: 10.1186/1471-2105-14-314  0.01
2013 Dasouki MJ, Rafi SK, Olm-Shipman AJ, Wilson NR, Abhyankar S, Ganter B, Furness LM, Fang J, Calado RT, Saadi I. Exome sequencing reveals a thrombopoietin ligand mutation in a Micronesian family with autosomal recessive aplastic anemia. Blood. 122: 3440-9. PMID 24085763 DOI: 10.1182/blood-2012-12-473538  0.01
2013 He Y, Gong L, Fang Y, Zhan Q, Liu HX, Lu Y, Guo GL, Lehman-McKeeman L, Fang J, Wan YJ. The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling. Bmc Genomics. 14: 575. PMID 23981290 DOI: 10.1186/1471-2164-14-575  0.01
2013 Liu HX, Fang Y, Hu Y, Gonzalez FJ, Fang J, Wan YJ. PPARβ Regulates Liver Regeneration by Modulating Akt and E2f Signaling. Plos One. 8: e65644. PMID 23823620 DOI: 10.1371/journal.pone.0065644  0.01
2013 Wang SL, Fang Y, Fang J. Diagnostic prediction of complex diseases using phase-only correlation based on virtual sample template. Bmc Bioinformatics. 14: S11. PMID 23815677 DOI: 10.1186/1471-2105-14-S8-S11  0.01
2013 Thomas JC, O'Hara JM, Hu L, Gao FP, Joshi SB, Volkin DB, Brey RN, Fang J, Karanicolas J, Mantis NJ, Middaugh CR. Effect of single-point mutations on the stability and immunogenicity of a recombinant ricin A chain subunit vaccine antigen. Human Vaccines & Immunotherapeutics. 9: 744-52. PMID 23563512 DOI: 10.4161/hv.22998  0.01
2013 Fang Y, Fang J. Discrimination of soluble and aggregation-prone proteins based on sequence information. Molecular Biosystems. 9: 806-11. PMID 23440081 DOI: 10.1039/c3mb70033j  0.01
2013 Hu Y, Liu HX, He Y, Fang Y, Fang J, Wan YJ. Transcriptome profiling and genome-wide DNA binding define the differential role of fenretinide and all-trans RA in regulating the death and survival of human hepatocellular carcinoma Huh7 cells. Biochemical Pharmacology. 85: 1007-17. PMID 23396089 DOI: 10.1016/j.bcp.2013.01.023  0.01
2013 Fang Y, Liu HX, Zhang N, Guo GL, Wan YJ, Fang J. NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse. Bioinformatics (Oxford, England). 29: 295-7. PMID 23196988 DOI: 10.1093/bioinformatics/bts693  0.01
2013 Gao S, Xu S, Fang Y, Fang J. Prediction of core cancer genes using multi-task classification framework. Journal of Theoretical Biology. 317: 62-70. PMID 23041449 DOI: 10.1016/j.jtbi.2012.09.027  0.01
2012 Zhan Q, Fang Y, He Y, Liu HX, Fang J, Wan YJ. Function annotation of hepatic retinoid x receptor α based on genome-wide DNA binding and transcriptome profiling. Plos One. 7: e50013. PMID 23166811 DOI: 10.1371/journal.pone.0050013  0.01
2012 Li Y, Fang J. PROTS-RF: a robust model for predicting mutation-induced protein stability changes. Plos One. 7: e47247. PMID 23077576 DOI: 10.1371/journal.pone.0047247  0.01
2012 Fang Y, Middaugh CR, Fang J. In silico classification of proteins from acidic and neutral cytoplasms. Plos One. 7: e45585. PMID 23049817 DOI: 10.1371/journal.pone.0045585  0.01
2012 Tai D, Fang J. SymDex: increasing the efficiency of chemical fingerprint similarity searches for comparing large chemical libraries by using query set indexing. Journal of Chemical Information and Modeling. 52: 1926-35. PMID 22849555 DOI: 10.1021/ci200606t  0.01
2012 Wang SL, Li XL, Fang J. Finding minimum gene subsets with heuristic breadth-first search algorithm for robust tumor classification. Bmc Bioinformatics. 13: 178. PMID 22830977 DOI: 10.1186/1471-2105-13-178  0.01
2012 Gao S, Xu S, Fang Y, Fang J. Using multitask classification methods to investigate the kinase-specific phosphorylation sites. Proteome Science. 10: S7. PMID 22759584 DOI: 10.1186/1477-5956-10-S1-S7  0.01
2011 Li Y, Fang Y, Fang J. Predicting residue-residue contacts using random forest models. Bioinformatics (Oxford, England). 27: 3379-84. PMID 22016406 DOI: 10.1093/bioinformatics/btr579  0.01
2011 Tai D, Chaguturu R, Fang J. K-Screen: a free application for high throughput screening data analysis, visualization, and laboratory information management. Combinatorial Chemistry & High Throughput Screening. 14: 757-65. PMID 21631412  0.01
2011 Fang J, Tai D. Evaluation of mutual information, genetic algorithm and SVR for feature selection in QSAR regression. Current Drug Discovery Technologies. 8: 107-11. PMID 21513488  0.01
2011 Yang JW, Hutchinson IV, Shah T, Fang J, Min DI. Gene polymorphism of vascular endothelial growth factor -1154 G>A is associated with hypertensive nephropathy in a Hispanic population. Molecular Biology Reports. 38: 2417-25. PMID 21080079 DOI: 10.1007/s11033-010-0376-8  0.01
2010 Cai S, Fang J, Li QS, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL. Comparative kinetics of cofactor association and dissociation for the human and trypanosomal S-adenosylhomocysteine hydrolases. 3. Role of lysyl and tyrosyl residues of the C-terminal extension. Biochemistry. 49: 8434-41. PMID 20687591 DOI: 10.1021/bi1007595  0.01
2010 Li Y, Fang J. Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins. Biochemical and Biophysical Research Communications. 396: 736-41. PMID 20451495 DOI: 10.1016/j.bbrc.2010.05.005  0.01
2010 Li Y, Middaugh CR, Fang J. A novel scoring function for discriminating hyperthermophilic and mesophilic proteins with application to predicting relative thermostability of protein mutants. Bmc Bioinformatics. 11: 62. PMID 20109199 DOI: 10.1186/1471-2105-11-62  0.01
2009 Cai S, Li QS, Fang J, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL. The rationale for targeting the NAD/NADH cofactor binding site of parasitic S-adenosyl-L-homocysteine hydrolase for the design of anti-parasitic drugs. Nucleosides, Nucleotides & Nucleic Acids. 28: 485-503. PMID 20183598 DOI: 10.1080/15257770903051031  0.01
2008 Theertham B, Wang JL, Fang J, Lushington GH. Novel Algorithms for the Identification of Biologically Informative Chemical Diversity Metrics. Current Computer-Aided Drug Design. 4: 23-34. PMID 19789655  0.01
2008 Li QS, Cai S, Fang J, Borchardt RT, Kuczera K, Middaugh CR, Schowen RL. Comparative kinetics of cofactor association and dissociation for the human and trypanosomal S-adenosylhomocysteine hydrolases. 2. The role of helix 18 stability. Biochemistry. 47: 4983-91. PMID 18393535 DOI: 10.1021/bi800175g  0.01
2008 Fang J, Dong Y, Williams TD, Lushington GH. Feature selection in validating mass spectrometry database search results. Journal of Bioinformatics and Computational Biology. 6: 223-40. PMID 18324754  0.01
2008 Fang J, Dong Y, Salamat-Miller N, Middaugh CR. DB-PABP: a database of polyanion-binding proteins. Nucleic Acids Research. 36: D303-6. PMID 17916573 DOI: 10.1093/nar/gkm784  0.01
2007 Li QS, Cai S, Borchardt RT, Fang J, Kuczera K, Middaugh CR, Schowen RL. Comparative kinetics of cofactor association and dissociation for the human and trypanosomal S-adenosylhomocysteine hydrolases. 1. Basic features of the association and dissociation processes. Biochemistry. 46: 5798-809. PMID 17447732 DOI: 10.1021/bi700170m  0.01
2007 Salamat-Miller N, Fang J, Seidel CW, Assenov Y, Albrecht M, Middaugh CR. A network-based analysis of polyanion-binding proteins utilizing human protein arrays Journal of Biological Chemistry. 282: 10153-10163. PMID 17276992 DOI: 10.1074/jbc.M610957200  0.01
2006 Rider V, Isuzugawa K, Twarog M, Jones S, Cameron B, Imakawa K, Fang J. Progesterone initiates Wnt-beta-catenin signaling but estradiol is required for nuclear activation and synchronous proliferation of rat uterine stromal cells. The Journal of Endocrinology. 191: 537-48. PMID 17170212 DOI: 10.1677/joe.1.07030  0.01
2006 Salamat-Miller N, Fang J, Seidel CW, Smalter AM, Assenov Y, Albrecht M, Middaugh CR. A network-based analysis of polyanion-binding proteins utilizing yeast protein arrays. Molecular & Cellular Proteomics : McP. 5: 2263-78. PMID 16982674 DOI: 10.1074/mcp.M600240-MCP200  0.01
2005 Marchin M, Kelly PT, Fang J. Tracker: continuous HMMER and BLAST searching. Bioinformatics (Oxford, England). 21: 388-9. PMID 15347577 DOI: 10.1093/bioinformatics/bti012  0.01
2004 Ram JL, Ritchie RP, Fang J, Gonzales FS, Selegean JP. Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase. Journal of Environmental Quality. 33: 1024-32. PMID 15224940  0.01
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