Mounir Tarek - Publications

Affiliations: 
Université de Lorraine 

40/57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rems L, Viano M, Kasimova MA, Miklavčič D, Tarek M. The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study. Bioelectrochemistry (Amsterdam, Netherlands). 125: 46-57. PMID 30265863 DOI: 10.1016/j.bioelechem.2018.07.018  0.52
2018 Bonhenry D, Dehez F, Tarek M. Effects of hydration on the protonation state of a lysine analog crossing a phospholipid bilayer - insights from molecular dynamics and free-energy calculations. Physical Chemistry Chemical Physics : Pccp. 20: 9101-9107. PMID 29565093 DOI: 10.1039/C8CP00312B  0.32
2018 Deyawe A, Kasimova MA, Delemotte L, Loussouarn G, Tarek M. Studying Kv Channels Function using Computational Methods. Methods in Molecular Biology (Clifton, N.J.). 1684: 321-341. PMID 29058202 DOI: 10.1007/978-1-4939-7362-0_24  0.6
2016 Casciola M, Kasimova MA, Rems L, Zullino S, Apollonio F, Tarek M. Properties of lipid electropores I: Molecular dynamics simulations of stabilized pores by constant charge imbalance. Bioelectrochemistry (Amsterdam, Netherlands). 109: 108-16. PMID 26883056 DOI: 10.1016/j.bioelechem.2016.01.006  0.52
2015 Cournia Z, Allen TW, Andricioaei I, Antonny B, Baum D, Brannigan G, Buchete NV, Deckman JT, Delemotte L, Del Val C, Friedman R, Gkeka P, Hege HC, Hénin J, Kasimova MA, ... ... Tarek M, et al. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. The Journal of Membrane Biology. 248: 611-40. PMID 26063070 DOI: 10.1007/s00232-015-9802-0  0.56
2015 Kasimova MA, Zaydman MA, Cui J, Tarek M. PIP₂-dependent coupling is prominent in Kv7.1 due to weakened interactions between S4-S5 and S6. Scientific Reports. 5: 7474. PMID 25559286 DOI: 10.1038/srep07474  0.56
2015 Delemotte L, Kasimova MA, Klein ML, Tarek M, Carnevale V. Free-energy landscape of ion-channel voltage-sensor-domain activation. Proceedings of the National Academy of Sciences of the United States of America. 112: 124-9. PMID 25535341 DOI: 10.1073/pnas.1416959112  0.56
2015 Polak A, Velikonja A, Kramar P, Tarek M, Miklavčič D. Electroporation threshold of POPC lipid bilayers with incorporated polyoxyethylene glycol (C12E8) Journal of Physical Chemistry B. 119: 192-200. PMID 25495217 DOI: 10.1021/jp509789m  0.56
2014 Conti Nibali V, D'Angelo G, Paciaroni A, Tobias DJ, Tarek M. On the Coupling between the Collective Dynamics of Proteins and Their Hydration Water. The Journal of Physical Chemistry Letters. 5: 1181-6. PMID 26274468 DOI: 10.1021/jz500023e  0.56
2014 Zaydman MA, Kasimova MA, McFarland K, Beller Z, Hou P, Kinser HE, Liang H, Zhang G, Shi J, Tarek M, Cui J. Domain-domain interactions determine the gating, permeation, pharmacology, and subunit modulation of the IKs ion channel. Elife. 3: e03606. PMID 25535795 DOI: 10.7554/eLife.03606  0.52
2014 Amarouch MY, Kasimova MA, Tarek M, Abriel H. Functional interaction between S1 and S4 segments in voltage-gated sodium channels revealed by human channelopathies. Channels (Austin, Tex.). 8: 414-20. PMID 25483584 DOI: 10.4161/19336950.2014.958922  0.52
2014 Conti Nibali V, D'Angelo G, Tarek M. Molecular dynamics simulation of short-wavelength collective dynamics of phospholipid membranes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 89. PMID 25353727 DOI: 10.1103/PhysRevE.89.050301  0.56
2014 Polak A, Tarek M, Tomšič M, Valant J, Poklar Ulrih N, Jamnik A, Kramar P, Miklavčič D. Structural properties of archaeal lipid bilayers: Small-angle X-ray scattering and molecular dynamics simulation study Langmuir. 30: 8308-8315. PMID 25000416 DOI: 10.1021/la5014208  0.56
2014 Kasimova MA, Tarek M, Shaytan AK, Shaitan KV, Delemotte L. Voltage-gated ion channel modulation by lipids: insights from molecular dynamics simulations. Biochimica Et Biophysica Acta. 1838: 1322-31. PMID 24513257 DOI: 10.1016/j.bbamem.2014.01.024  0.6
2014 Polak A, Tarek M, Tomšič M, Valant J, Ulrih NP, Jamnik A, Kramar P, Miklavčič D. Electroporation of archaeal lipid membranes using MD simulations Bioelectrochemistry. 100: 18-26. PMID 24461702 DOI: 10.1016/j.bioelechem.2013.12.006  0.56
2013 Bonhenry D, Tarek M, Dehez F. Effects of Phospholipid Composition on the Transfer of a Small Cationic Peptide Across a Model Biological Membrane. Journal of Chemical Theory and Computation. 9: 5675-84. PMID 26592298 DOI: 10.1021/ct400576e  0.32
2013 Abriel H, de Lange E, Kucera JP, Loussouarn G, Tarek M. Computational tools to investigate genetic cardiac channelopathies. Frontiers in Physiology. 4: 390. PMID 24421770 DOI: 10.3389/fphys.2013.00390  0.52
2013 Polak A, Bonhenry D, Dehez F, Kramar P, Miklavčič D, Tarek M. On the electroporation thresholds of lipid bilayers: Molecular dynamics simulation investigations Journal of Membrane Biology. 246: 843-850. PMID 23780415 DOI: 10.1007/s00232-013-9570-7  0.56
2013 Tarek M, Delemotte L. Omega currents in voltage-gated ion channels: what can we learn from uncovering the voltage-sensing mechanism using MD simulations? Accounts of Chemical Research. 46: 2755-62. PMID 23697886 DOI: 10.1021/ar300290u  0.6
2012 Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. The Journal of General Physiology. 140: 587-94. PMID 23183694 DOI: 10.1085/jgp.201210873  0.56
2012 Loussouarn G, Tarek M. Mechanisms of Ion Channels Voltage-Dependency: All about Molecular Sensors, Gates, Levers, Locks, and Grease. Frontiers in Pharmacology. 3: 174. PMID 23060794 DOI: 10.3389/fphar.2012.00174  0.52
2012 Abderemane-Ali F, Es-Salah-Lamoureux Z, Delemotte L, Kasimova MA, Labro AJ, Snyders DJ, Fedida D, Tarek M, Baró I, Loussouarn G. Dual effect of phosphatidylinositol (4,5)-bisphosphate PIP(2) on Shaker K(+) [corrected] channels. The Journal of Biological Chemistry. 287: 36158-67. PMID 22932893 DOI: 10.1074/jbc.M112.382085  0.6
2012 Kramar P, Delemotte L, Maček Lebar A, Kotulska M, Tarek M, Miklavčič D. Molecular-level characterization of lipid membrane electroporation using linearly rising current. The Journal of Membrane Biology. 245: 651-9. PMID 22886207 DOI: 10.1007/s00232-012-9487-6  0.6
2012 Breton M, Delemotte L, Silve A, Mir LM, Tarek M. Transport of siRNA through lipid membranes driven by nanosecond electric pulses: an experimental and computational study. Journal of the American Chemical Society. 134: 13938-41. PMID 22880891 DOI: 10.1021/ja3052365  0.6
2012 Delemotte L, Klein ML, Tarek M. Molecular dynamics simulations of voltage-gated cation channels: insights on voltage-sensor domain function and modulation. Frontiers in Pharmacology. 3: 97. PMID 22654756 DOI: 10.3389/fphar.2012.00097  0.6
2012 Delemotte L, Tarek M. Molecular dynamics simulations of lipid membrane electroporation. The Journal of Membrane Biology. 245: 531-43. PMID 22644388 DOI: 10.1007/s00232-012-9434-6  0.6
2011 Delemotte L, Tarek M, Klein ML, Amaral C, Treptow W. Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations Proceedings of the National Academy of Sciences of the United States of America. 108: 6109-6114. PMID 21444776 DOI: 10.1073/pnas.1102724108  0.56
2010 Delemotte L, Treptow W, Klein ML, Tarek M. Effect of sensor domain mutations on the properties of voltage-gated ion channels: molecular dynamics studies of the potassium channel Kv1.2. Biophysical Journal. 99: L72-4. PMID 21044565 DOI: 10.1016/j.bpj.2010.08.069  0.56
2010 Kraszewski S, Tarek M, Treptow W, Ramseyer C. Affinity of C60 neat fullerenes with membrane proteins: a computational study on potassium channels. Acs Nano. 4: 4158-64. PMID 20568711 DOI: 10.1021/nn100723r  0.56
2009 Tobias DJ, Sengupta N, Tarek M. Hydration dynamics of purple membranes. Faraday Discussions. 141: 99-116; discussion 1. PMID 19227353 DOI: 10.1039/b809371g  0.56
2009 Treptow W, Tarek M, Klein ML. Initial response of the potassium channel voltage sensor to a transmembrane potential Journal of the American Chemical Society. 131: 2107-2109. PMID 19175309 DOI: 10.1021/ja807330g  0.56
2008 Delemotte L, Dehez F, Treptow W, Tarek M. Modeling membranes under a transmembrane potential. The Journal of Physical Chemistry. B. 112: 5547-50. PMID 18412411 DOI: 10.1021/jp710846y  0.6
2008 Treptow W, Marrink SJ, Tarek M. Gating motions in voltage-gated potassium channels revealed by coarse-grained molecular dynamics simulations. The Journal of Physical Chemistry. B. 112: 3277-82. PMID 18293960 DOI: 10.1021/jp709675e  0.56
2007 Dehez F, Tarek M, Chipot C. Energetics of ion transport in a peptide nanotube. The Journal of Physical Chemistry. B. 111: 10633-5. PMID 17705530 DOI: 10.1021/jp075308s  0.32
2006 Treptow W, Tarek M. K+ conduction in the selectivity filter of potassium channels is monitored by the charge distribution along their sequence. Biophysical Journal. 91: L81-3. PMID 16980355 DOI: 10.1529/biophysj.106.095992  0.56
2006 Treptow W, Tarek M. Molecular restraints in the permeation pathway of ion channels. Biophysical Journal. 91: L26-8. PMID 16751240 DOI: 10.1529/biophysj.106.087437  0.56
2006 Treptow W, Tarek M. Environment of the gating charges in the Kv1.2 Shaker potassium channel. Biophysical Journal. 90: L64-6. PMID 16533847 DOI: 10.1529/biophysj.106.080754  0.56
2004 Curtis JE, Tarek M, Tobias DJ. Methyl group dynamics as a probe of the protein dynamical transition. Journal of the American Chemical Society. 126: 15928-9. PMID 15584703 DOI: 10.1021/ja0480623  0.56
2004 Treptow W, Maigret B, Chipot C, Tarek M. Coupled motions between pore and voltage-sensor domains: a model for Shaker B, a voltage-gated potassium channel. Biophysical Journal. 87: 2365-79. PMID 15454436 DOI: 10.1529/biophysj.104.039628  0.56
2002 Koubi L, Tarek M, Bandyopadhyay S, Klein ML, Scharf D. Effects of the nonimmobilizer hexafluroethane on the model membrane dimyristoylphosphatidylcholine. Anesthesiology. 97: 848-55. PMID 12357150  0.6
Low-probability matches
2019 Kotnik T, Rems L, Tarek M, Miklavčič D. Membrane Electroporation and Electropermeabilization: Mechanisms and Models. Annual Review of Biophysics. PMID 30786231 DOI: 10.1146/annurev-biophys-052118-115451  0.24
2016 Rems L, Tarek M, Casciola M, Miklavčič D. Properties of lipid electropores II: Comparison of continuum-level modeling of pore conductance to molecular dynamics simulations. Bioelectrochemistry (Amsterdam, Netherlands). 112: 112-24. PMID 27091314 DOI: 10.1016/j.bioelechem.2016.03.005  0.24
2013 Lacerda L, Ali-Boucetta H, Kraszewski S, Tarek M, Prato M, Ramseyer C, Kostarelos K, Bianco A. How do functionalized carbon nanotubes land on, bind to and pierce through model and plasma membranes. Nanoscale. 5: 10242-50. PMID 24056765 DOI: 10.1039/c3nr03184e  0.24
2012 Kraszewski S, Bianco A, Tarek M, Ramseyer C. Insertion of short amino-functionalized single-walled carbon nanotubes into phospholipid bilayer occurs by passive diffusion. Plos One. 7: e40703. PMID 22815794 DOI: 10.1371/journal.pone.0040703  0.24
2011 Kraszewski S, Tarek M, Ramseyer C. Uptake and translocation mechanisms of cationic amino derivatives functionalized on pristine C60 by lipid membranes: a molecular dynamics simulation study. Acs Nano. 5: 8571-8. PMID 21981729 DOI: 10.1021/nn201952c  0.24
2014 Garrec J, Monari A, Assfeld X, Mir LM, Tarek M. Lipid Peroxidation in Membranes: The Peroxyl Radical Does Not "Float". The Journal of Physical Chemistry Letters. 5: 1653-8. PMID 26270361 DOI: 10.1021/jz500502q  0.12
2014 Salomone F, Breton M, Leray I, Cardarelli F, Boccardi C, Bonhenry D, Tarek M, Mir LM, Beltram F. High-yield nontoxic gene transfer through conjugation of the CM₁₈-Tat₁₁ chimeric peptide with nanosecond electric pulses. Molecular Pharmaceutics. 11: 2466-74. PMID 24865174 DOI: 10.1021/mp500223t  0.12
2008 Tarek M, Tobias DJ. The role of protein-solvent hydrogen bond dynamics in the structural relaxation of a protein in glycerol versus water. European Biophysics Journal : Ebj. 37: 701-9. PMID 18427802 DOI: 10.1007/s00249-008-0324-x  0.12
2006 Chipot C, Tarek M. Interaction of a peptide nanotube with a water-membrane interface. Physical Biology. 3: S20-5. PMID 16582462 DOI: 10.1088/1478-3975/3/1/S03  0.12
2006 Hénin J, Maigret B, Tarek M, Escrieut C, Fourmy D, Chipot C. Probing a model of a GPCR/ligand complex in an explicit membrane environment: the human cholecystokinin-1 receptor. Biophysical Journal. 90: 1232-40. PMID 16326901 DOI: 10.1529/biophysj.105.070599  0.12
2003 Tarek M, Maigret B, Chipot C. Molecular dynamics investigation of an oriented cyclic peptide nanotube in DMPC bilayers. Biophysical Journal. 85: 2287-98. PMID 14507693 DOI: 10.1016/S0006-3495(03)74653-0  0.12
2016 Casciola M, Tarek M. A molecular insight into the electro-transfer of small molecules through electropores driven by electric fields. Biochimica Et Biophysica Acta. 1858: 2278-2289. PMID 27018309 DOI: 10.1016/j.bbamem.2016.03.022  0.08
2017 Tarek M. Atomistic Simulations of Electroporation of Model Cell Membranes. Advances in Anatomy, Embryology, and Cell Biology. 227: 1-15. PMID 28980037 DOI: 10.1007/978-3-319-56895-9_1  0.01
2014 Tarek M. Prerequisites to proton transport in the bacterial ClC-ec1 Cl-/H+ exchanger. Proceedings of the National Academy of Sciences of the United States of America. 111: 1668-9. PMID 24459185 DOI: 10.1073/pnas.1323186111  0.01
2011 Kaye MD, Schmalzl K, Nibali VC, Tarek M, Rheinstädter MC. Ethanol enhances collective dynamics of lipid membranes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 050907. PMID 21728483 DOI: 10.1103/PhysRevE.83.050907  0.01
2010 Khalfa A, Tarek M. On the antibacterial action of cyclic peptides: insights from coarse-grained MD simulations. The Journal of Physical Chemistry. B. 114: 2676-84. PMID 20143883 DOI: 10.1021/jp9064196  0.01
2005 Tarek M. Membrane electroporation: a molecular dynamics simulation. Biophysical Journal. 88: 4045-53. PMID 15764667 DOI: 10.1529/biophysj.104.050617  0.01
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