| Year |
Citation |
Score |
| 2023 |
Harris L, Fondrie WE, Oh S, Noble WS. Evaluating Proteomics Imputation Methods with Improved Criteria. Journal of Proteome Research. 22: 3427-3438. PMID 37861703 DOI: 10.1021/acs.jproteome.3c00205 |
0.463 |
|
| 2023 |
Allen C, Meinl R, Paez JS, Searle BC, Just S, Pino LK, Fondrie WE. nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows. Journal of Proteome Research. PMID 37417926 DOI: 10.1021/acs.jproteome.2c00613 |
0.702 |
|
| 2023 |
Kertesz-Farkas A, Nii Adoquaye Acquaye FL, Bhimani K, Eng JK, Fondrie WE, Grant C, Hoopmann MR, Lin A, Lu YY, Moritz RL, MacCoss MJ, Noble WS. The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data. Journal of Proteome Research. PMID 36598107 DOI: 10.1021/acs.jproteome.2c00615 |
0.516 |
|
| 2022 |
Heil LR, Fondrie WE, McGann CD, Federation AJ, Noble WS, MacCoss MJ, Keich U. Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. Journal of Proteome Research. 21: 1382-1391. PMID 35549345 DOI: 10.1021/acs.jproteome.1c00895 |
0.51 |
|
| 2022 |
Phipps WS, Smith KD, Yang HY, Henderson CM, Pflaum H, Lerch ML, Fondrie WE, Emrick MA, Wu CC, MacCoss MJ, Noble WS, Hoofnagle AN. Tandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing. American Journal of Clinical Pathology. 157: 748-757. PMID 35512256 DOI: 10.1093/ajcp/aqab185 |
0.499 |
|
| 2021 |
Fondrie WE, Bittremieux W, Noble WS. ppx: Programmatic Access to Proteomics Data Repositories. Journal of Proteome Research. PMID 34342226 DOI: 10.1021/acs.jproteome.1c00454 |
0.469 |
|
| 2021 |
Mudge MC, Nunn BL, Firth E, Ewert M, Hales K, Fondrie WE, Noble WS, Toner J, Light B, Junge KA. Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments. Environmental Microbiology. PMID 33760340 DOI: 10.1111/1462-2920.15485 |
0.673 |
|
| 2021 |
Fondrie WE, Noble WS. mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. Journal of Proteome Research. PMID 33596079 DOI: 10.1021/acs.jproteome.0c01010 |
0.463 |
|
| 2020 |
Fondrie WE, Noble WS. A machine learning strategy that leverages large datasets to boost statistical power in small-scale experiments. Journal of Proteome Research. PMID 32009418 DOI: 10.1021/Acs.Jproteome.9B00780 |
0.49 |
|
| 2018 |
Liang T, Leung LM, Opene B, Fondrie WE, Lee YI, Chandler CE, Yoon SH, Doi Y, Ernst RK, Goodlett DR. Rapid microbial identification and antibiotic resistance detection by mass spectrometric analysis of membrane lipids. Analytical Chemistry. PMID 30571097 DOI: 10.1021/Acs.Analchem.8B02611 |
0.763 |
|
| 2018 |
Fondrie WE, Liang T, Oyler BL, Leung LM, Ernst RK, Strickland DK, Goodlett DR. Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids. Scientific Reports. 8: 15857. PMID 30367087 DOI: 10.1038/S41598-018-33681-8 |
0.686 |
|
| 2018 |
Au DT, Ying Z, Hernández-Ochoa EO, Fondrie WE, Hampton B, Migliorini M, Galisteo R, Schneider MF, Daugherty A, Rateri DL, Strickland DK, Muratoglu SC. LRP1 (Low-Density Lipoprotein Receptor-Related Protein 1) Regulates Smooth Muscle Contractility by Modulating Ca Signaling and Expression of Cytoskeleton-Related Proteins. Arteriosclerosis, Thrombosis, and Vascular Biology. 38: 2651-2664. PMID 30354243 DOI: 10.1161/Atvbaha.118.311197 |
0.501 |
|
| 2018 |
Au DT, Arai AL, Fondrie WE, Muratoglu SC, Strickland DK. Role of the LDL Receptor-Related Protein 1 in Regulating Protease Activity and Signaling Pathways in the Vasculature. Current Drug Targets. PMID 29749311 DOI: 10.2174/1389450119666180511162048 |
0.507 |
|
| 2018 |
Muratoglu SC, Au DT, Ying Z, Hernandez-Ochoa E, Fondrie WE, Hampton B, Migliorini M, Galisteo R, Schneider MF, Daugherty A, Rateri DL, Strickland D. Abstract 284: Lrp1 Regulates Smooth Muscle Contractility by Modulating Cytoskeletal Dynamics and Ca
2+
Signaling Arteriosclerosis, Thrombosis, and Vascular Biology. 38. DOI: 10.1161/Atvb.38.Suppl_1.284 |
0.474 |
|
| 2018 |
Liang T, Schneider T, Yoon SH, Oyler BL, Leung LM, Fondrie WE, Yen G, Huang Y, Ernst RK, Nilsson E, Goodlett DR. Optimized surface acoustic wave nebulization facilitates bacterial phenotyping International Journal of Mass Spectrometry. 427: 65-72. DOI: 10.1016/J.Ijms.2017.09.007 |
0.666 |
|
| 2017 |
Leung LM, Fondrie WE, Doi Y, Johnson JK, Strickland DK, Ernst RK, Goodlett DR. Identification of the ESKAPE pathogens by mass spectrometric analysis of microbial membrane glycolipids. Scientific Reports. 7: 6403. PMID 28743946 DOI: 10.1038/S41598-017-04793-4 |
0.778 |
|
| 2017 |
Khan MM, Tran BQ, Jang YJ, Park SH, Fondrie WE, Chowdhury K, Yoon SH, Goodlett DR, Chae SW, Chae HJ, Seo SY, Goo YA. Assessment of the Therapeutic Potential of Persimmon Leaf Extract on Prediabetic Subjects. Molecules and Cells. PMID 28681595 DOI: 10.14348/Molcells.2017.2298 |
0.698 |
|
| 2015 |
Clark DJ, Fondrie WE, Liao Z, Hanson PI, Fulton A, Mao L, Yang AJ. Redefining the breast cancer exosome proteome by tandem mass tag quantitative proteomics and multivariate cluster analysis. Analytical Chemistry. PMID 26378940 DOI: 10.1021/Acs.Analchem.5B02586 |
0.376 |
|
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