Eugene Yi - Publications

Affiliations: 
2000-2003 Proteomics Institute for Systems Biology, Seattle, Seattle, WA, United States 

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Cha MY, Kwon YW, Ahn HS, Jeong H, Lee YY, Moon M, Baik SH, Kim DK, Song H, Yi EC, Hwang D, Kim HS, Mook-Jung I. Protein-Induced Pluripotent Stem Cells Ameliorate Cognitive Dysfunction and Reduce Aβ Deposition in a Mouse Model of Alzheimer's Disease. Stem Cells Translational Medicine. 6: 293-305. PMID 28170178 DOI: 10.5966/sctm.2016-0081  0.44
2016 Kang S, Jeong H, Baek JH, Lee SJ, Han SH, Cho HJ, Kim H, Hong HS, Kim YH, Yi EC, Seo SW, Na DL, Hwang D, Mook-Jung I. PiB-PET Imaging-Based Serum Proteome Profiles Predict Mild Cognitive Impairment and Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 27392853 DOI: 10.3233/JAD-160025  0.96
2016 Kim SM, Cho BK, Kang MJ, Norwitz ER, Lee SM, Lee J, Park CW, Kim BJ, Jun JK, Yi EC, Park JS. Expression changes of proteins associated with the development of preeclampsia in maternal plasma: A case-control study. Proteomics. PMID 27001287 DOI: 10.1002/pmic.201500381  0.96
2015 Kim EG, Kwak SH, Hwang D, Yi EC, Park KS, Koo BK, Kim KM. The Level of Autoantibodies Targeting Eukaryote Translation Elongation Factor 1 α1 and Ubiquitin-Conjugating Enzyme 2L3 in Nondiabetic Young Adults. Diabetes & Metabolism Journal. PMID 26616590  0.44
2015 Jang JH, Kang MJ, Ko GP, Kim SJ, Yi EC, Zhang YH. Identification of a novel splice variant of neuronal nitric oxide synthase, nNOSβ, in myofilament fraction of murine cardiomyocytes. Nitric Oxide : Biology and Chemistry / Official Journal of the Nitric Oxide Society. PMID 26271450 DOI: 10.1016/j.niox.2015.07.005  0.96
2014 Kim Y, Han D, Min H, Jin J, Yi EC, Kim Y. Comparative proteomic profiling of pancreatic ductal adenocarcinoma cell lines. Molecules and Cells. 37: 888-98. PMID 25518923 DOI: 10.14348/molcells.2014.0207  0.96
2014 Kang MJ, Park YJ, You S, Yoo SA, Choi S, Kim DH, Cho CS, Yi EC, Hwang D, Kim WU. Urinary proteome profile predictive of disease activity in rheumatoid arthritis. Journal of Proteome Research. 13: 5206-17. PMID 25222917 DOI: 10.1021/pr500467d  0.96
2014 Koo BK, Chae S, Kim KM, Kang MJ, Kim EG, Kwak SH, Jung HS, Cho YM, Choi SH, Park YJ, Shin CH, Jang HC, Shin CS, Hwang D, Yi EC, et al. Identification of novel autoantibodies in type 1 diabetic patients using a high-density protein microarray. Diabetes. 63: 3022-32. PMID 24947363 DOI: 10.2337/db13-1566  0.96
2014 Cho BK, Koo YD, Kim K, Kang MJ, Lee YY, Kim Y, Park KS, Kim KP, Yi EC. Determination of selected reaction monitoring peptide transitions via multiplexed product-ion scan modes. Rapid Communications in Mass Spectrometry : Rcm. 28: 773-80. PMID 24573808 DOI: 10.1002/rcm.6837  0.96
2013 Lee YY, Kim HP, Kang MJ, Cho BK, Han SW, Kim TY, Yi EC. Phosphoproteomic analysis identifies activated MET-axis PI3K/AKT and MAPK/ERK in lapatinib-resistant cancer cell line. Experimental & Molecular Medicine. 45: e64. PMID 24263233 DOI: 10.1038/emm.2013.115  0.96
2013 Kim KM, Yi EC. CD147 is critical for cancer stem cell chemoresistance: what does this mean for the clinic? Expert Review of Proteomics. 10: 313-5. PMID 23992413 DOI: 10.1586/14789450.2013.814936  0.96
2013 Kim NH, Hong BK, Choi SY, Moo Kwon H, Cho CS, Yi EC, Kim WU. Reactive oxygen species regulate context-dependent inhibition of NFAT5 target genes. Experimental & Molecular Medicine. 45: e32. PMID 23867654 DOI: 10.1038/emm.2013.61  0.96
2013 Kang MJ, Kim C, Jeong H, Cho BK, Ryou AL, Hwang D, Mook-Jung I, Yi EC. Synapsin-1 and tau reciprocal O-GlcNAcylation and phosphorylation sites in mouse brain synaptosomes. Experimental & Molecular Medicine. 45: e29. PMID 23807304 DOI: 10.1038/emm.2013.56  0.96
2013 Kang MJ, Kim HP, Lee KS, Yoo YD, Kwon YT, Kim KM, Kim TY, Yi EC. Proteomic analysis reveals that CD147/EMMPRIN confers chemoresistance in cancer stem cell-like cells. Proteomics. 13: 1714-25. PMID 23554123 DOI: 10.1002/pmic.201200511  0.96
2013 Tasaki T, Kim ST, Zakrzewska A, Lee BE, Kang MJ, Yoo YD, Cha-Molstad HJ, Hwang J, Soung NK, Sung KS, Kim SH, Nguyen MD, Sun M, Yi EC, Kim BY, et al. UBR box N-recognin-4 (UBR4), an N-recognin of the N-end rule pathway, and its role in yolk sac vascular development and autophagy. Proceedings of the National Academy of Sciences of the United States of America. 110: 3800-5. PMID 23431188 DOI: 10.1073/pnas.1217358110  0.96
2013 Jung JW, Bae SJ, Kang GY, Kim KH, Yeo WS, Park SH, Seol JH, Yi EC, Kim KP. Analysis of the biochemical role of Lys-11 in polyubiquitin chain formation using quantitative mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 27: 339-46. PMID 23239382 DOI: 10.1002/rcm.6447  0.96
2012 Kim KM, Yi EC, Kim Y. Mapping protein receptor-ligand interactions via in vivo chemical crosslinking, affinity purification, and differential mass spectrometry. Methods (San Diego, Calif.). 56: 161-5. PMID 22062956 DOI: 10.1016/j.ymeth.2011.10.013  0.96
2008 Hwang D, Zhang N, Lee H, Yi E, Zhang H, Lee IY, Hood L, Aebersold R. MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis. Bioinformatics (Oxford, England). 24: 2641-2. PMID 18805798 DOI: 10.1093/bioinformatics/btn491  0.72
2008 Kennedy J, Yi EC. Use of gas-phase fractionation to increase protein identifications : application to the peroxisome. Methods in Molecular Biology (Clifton, N.J.). 432: 217-28. PMID 18370021 DOI: 10.1007/978-1-59745-028-7_15  0.96
2007 Goodlett DR, Yi EC, Mottay P. Preparation and Use of an Integrated Microcapillary HPLC Column and ESI Device for Proteomic Analysis. Csh Protocols. 2007: pdb.prot4617. PMID 21357072  0.96
2007 Chiang MC, Juo CG, Chang HH, Chen HM, Yi EC, Chern Y. Systematic uncovering of multiple pathways underlying the pathology of Huntington disease by an acid-cleavable isotope-coded affinity tag approach. Molecular & Cellular Proteomics : McP. 6: 781-97. PMID 17272267 DOI: 10.1074/mcp.M600356-MCP200  0.96
2007 Wang P, Tang H, Fitzgibbon MP, McIntosh M, Coram M, Zhang H, Yi E, Aebersold R. A statistical method for chromatographic alignment of LC-MS data. Biostatistics (Oxford, England). 8: 357-67. PMID 16880200 DOI: 10.1093/biostatistics/kxl015  0.96
2006 Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, et al. UniPep--a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biology. 7: R73. PMID 16901351 DOI: 10.1186/gb-2006-7-8-R73  0.96
2006 Chen R, Pan S, Yi EC, Donohoe S, Bronner MP, Potter JD, Goodlett DR, Aebersold R, Brentnall TA. Quantitative proteomic profiling of pancreatic cancer juice. Proteomics. 6: 3871-9. PMID 16739137 DOI: 10.1002/pmic.200500702  0.96
2006 Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Molecular & Cellular Proteomics : McP. 5: 987-97. PMID 16497792 DOI: 10.1074/mcp.M500367-MCP200  0.96
2005 Dilworth DJ, Tackett AJ, Rogers RS, Yi EC, Christmas RH, Smith JJ, Siegel AF, Chait BT, Wozniak RW, Aitchison JD. The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control. The Journal of Cell Biology. 171: 955-65. PMID 16365162 DOI: 10.1083/jcb.200509061  0.96
2005 Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R. Improving mass and liquid chromatography based identification of proteins using bayesian scoring. Journal of Proteome Research. 4: 2174-84. PMID 16335964 DOI: 10.1021/pr050251c  0.96
2005 Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA. Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology. 129: 1187-97. PMID 16230073 DOI: 10.1053/j.gastro.2005.08.001  0.96
2005 Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R. Human Plasma PeptideAtlas. Proteomics. 5: 3497-500. PMID 16052627 DOI: 10.1002/pmic.200500160  0.96
2005 Li XJ, Yi EC, Kemp CJ, Zhang H, Aebersold R. A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 1328-40. PMID 16048906 DOI: 10.1074/mcp.M500141-MCP200  0.72
2005 Welch KD, Wen B, Goodlett DR, Yi EC, Lee H, Reilly TP, Nelson SD, Pohl LR. Proteomic identification of potential susceptibility factors in drug-induced liver disease. Chemical Research in Toxicology. 18: 924-33. PMID 15962927 DOI: 10.1021/tx050011b  0.96
2005 Zhang J, Goodlett DR, Quinn JF, Peskind E, Kaye JA, Zhou Y, Pan C, Yi E, Eng J, Wang Q, Aebersold RH, Montine TJ. Quantitative proteomics of cerebrospinal fluid from patients with Alzheimer disease. Journal of Alzheimer's Disease : Jad. 7: 125-33; discussion 1. PMID 15851850  0.96
2005 Lin B, White JT, Lu W, Xie T, Utleg AG, Yan X, Yi EC, Shannon P, Khrebtukova I, Lange PH, Goodlett DR, Zhou D, Vasicek TJ, Hood L. Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease. Cancer Research. 65: 3081-91. PMID 15833837 DOI: 10.1158/0008-5472.CAN-04-3218  0.96
2005 Sydorskyy Y, Dilworth DJ, Halloran B, Yi EC, Makhnevych T, Wozniak RW, Aitchison JD. Nop53p is a novel nucleolar 60S ribosomal subunit biogenesis protein. The Biochemical Journal. 388: 819-26. PMID 15686447 DOI: 10.1042/BJ20041297  0.96
2005 Yi EC, Li XJ, Cooke K, Lee H, Raught B, Page A, Aneliunas V, Hieter P, Goodlett DR, Aebersold R. Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme. Proteomics. 5: 380-7. PMID 15648049 DOI: 10.1002/pmic.200400970  0.96
2005 Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, ... ... Yi EC, et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biology. 6: R9. PMID 15642101 DOI: 10.1186/gb-2004-6-1-r9  0.96
2005 Zhang H, Yi EC, Li XJ, Mallick P, Kelly-Spratt KS, Masselon CD, Camp DG, Smith RD, Kemp CJ, Aebersold R. High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 144-55. PMID 15608340 DOI: 10.1074/mcp.M400090-MCP200  0.96
2005 Zhang J, Goodlett DR, Peskind ER, Quinn JF, Zhou Y, Wang Q, Pan C, Yi E, Eng J, Aebersold RH, Montine TJ. Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid. Neurobiology of Aging. 26: 207-27. PMID 15582749 DOI: 10.1016/j.neurobiolaging.2004.03.012  0.96
2004 Yi EC, Goodlett DR. Quantitative protein profile comparisons using the isotope-coded affinity tag method. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 23.2. PMID 18429263 DOI: 10.1002/0471140864.ps2302s34  0.96
2004 Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. The Journal of Cell Biology. 167: 1099-112. PMID 15596542 DOI: 10.1083/jcb.200404119  0.96
2004 Kao WC, Chen YR, Yi EC, Lee H, Tian Q, Wu KM, Tsai SF, Yu SS, Chen YJ, Aebersold R, Chan SI. Quantitative proteomic analysis of metabolic regulation by copper ions in Methylococcus capsulatus (Bath). The Journal of Biological Chemistry. 279: 51554-60. PMID 15385566 DOI: 10.1074/jbc.M408013200  0.72
2004 Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. Lipid raft proteins and their identification in T lymphocytes. Sub-Cellular Biochemistry. 37: 121-52. PMID 15376619  0.96
2004 Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG. System-based proteomic analysis of the interferon response in human liver cells. Genome Biology. 5: R54. PMID 15287976 DOI: 10.1186/gb-2004-5-8-r54  0.96
2004 Tian Q, Stepaniants SB, Mao M, Weng L, Feetham MC, Doyle MJ, Yi EC, Dai H, Thorsson V, Eng J, Goodlett D, Berger JP, Gunter B, Linseley PS, Stoughton RB, et al. Integrated genomic and proteomic analyses of gene expression in Mammalian cells. Molecular & Cellular Proteomics : McP. 3: 960-9. PMID 15238602 DOI: 10.1074/mcp.M400055-MCP200  0.96
2004 Li XJ, Pedrioli PG, Eng J, Martin D, Yi EC, Lee H, Aebersold R. A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry. Analytical Chemistry. 76: 3856-60. PMID 15228367 DOI: 10.1021/ac035375s  0.72
2004 Ranish JA, Hahn S, Lu Y, Yi EC, Li XJ, Eng J, Aebersold R. Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nature Genetics. 36: 707-13. PMID 15220919 DOI: 10.1038/ng1385  0.72
2004 Lee H, Yi EC, Wen B, Reily TP, Pohl L, Nelson S, Aebersold R, Goodlett DR. Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 803: 101-10. PMID 15026003 DOI: 10.1016/j.jchromb.2003.09.005  0.96
2004 Martin DB, Gifford DR, Wright ME, Keller A, Yi E, Goodlett DR, Aebersold R, Nelson PS. Quantitative proteomic analysis of proteins released by neoplastic prostate epithelium. Cancer Research. 64: 347-55. PMID 14729644 DOI: 10.1158/0008-5472.CAN-03-2062  0.96
2003 Fejes AP, Yi EC, Goodlett DR, Beatty JT. Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris. Photosynthesis Research. 78: 195-203. PMID 16245051 DOI: 10.1023/B:PRES.0000006752.81486.74  0.96
2003 Yi EC, Lee H, Aebersold R, Goodlett DR. A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine operation. Rapid Communications in Mass Spectrometry : Rcm. 17: 2093-8. PMID 12955739 DOI: 10.1002/rcm.1150  0.96
2003 Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Molecular & Cellular Proteomics : McP. 2: 506-24. PMID 12872007 DOI: 10.1074/mcp.M300044-MCP200  0.96
2003 Kolker E, Purvine S, Galperin MY, Stolyar S, Goodlett DR, Nesvizhskii AI, Keller A, Xie T, Eng JK, Yi E, Hood L, Picone AF, Cherny T, Tjaden BC, Siegel AF, et al. Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20. Journal of Bacteriology. 185: 4593-602. PMID 12867470 DOI: 10.1128/JB.185.15.4593-4602.2003  0.96
2003 Guina T, Wu M, Miller SI, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Ernst RK, Lee KA. Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation. Journal of the American Society For Mass Spectrometry. 14: 742-51. PMID 12837596 DOI: 10.1016/S1044-0305(03)00133-8  0.96
2003 Shiio Y, Eisenman RN, Yi EC, Donohoe S, Goodlett DR, Aebersold R. Quantitative proteomic analysis of chromatin-associated factors. Journal of the American Society For Mass Spectrometry. 14: 696-703. PMID 12837591 DOI: 10.1016/S1044-0305(03)00204-6  0.96
2003 Purvine S, Eppel JT, Yi EC, Goodlett DR. Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer. Proteomics. 3: 847-50. PMID 12833507 DOI: 10.1002/pmic.200300362  0.96
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation. Molecular & Cellular Proteomics : McP. 2: 428-42. PMID 12832459 DOI: 10.1074/mcp.M300041-MCP200  0.96
2003 von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts. Molecular & Cellular Proteomics : McP. 2: 426-7. PMID 12832456 DOI: 10.1074/mcp.D300002-MCP200  0.96
2003 Utleg AG, Yi EC, Xie T, Shannon P, White JT, Goodlett DR, Hood L, Lin B. Proteomic analysis of human prostasomes. The Prostate. 56: 150-61. PMID 12746840 DOI: 10.1002/pros.10255  0.96
2003 Guina T, Purvine SO, Yi EC, Eng J, Goodlett DR, Aebersold R, Miller SI. Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways. Proceedings of the National Academy of Sciences of the United States of America. 100: 2771-6. PMID 12601166 DOI: 10.1073/pnas.0435846100  0.96
2003 Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. The study of macromolecular complexes by quantitative proteomics. Nature Genetics. 33: 349-55. PMID 12590263 DOI: 10.1038/ng1101  0.96
2002 Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proceedings of the National Academy of Sciences of the United States of America. 99: 14913-8. PMID 12403819 DOI: 10.1073/pnas.192558999  0.96
2002 Shiio Y, Donohoe S, Yi EC, Goodlett DR, Aebersold R, Eisenman RN. Quantitative proteomic analysis of Myc oncoprotein function. The Embo Journal. 21: 5088-96. PMID 12356725  0.96
2002 Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 23: 3205-16. PMID 12298092 DOI: 10.1002/1522-2683(200209)23:18<3205::AID-ELPS3205>3.0.CO;2-Y  0.96
2002 Goodlett DR, Yi EC. Proteomics without polyacrylamide: qualitative and quantitative uses of tandem mass spectrometry in proteome analysis. Functional & Integrative Genomics. 2: 138-53. PMID 12192588 DOI: 10.1007/s10142-001-0041-3  0.96
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