Shiqian Qi - Related publications

Affiliations: 
Sichuan University, Chengdu Shi, Sichuan Sheng, China 
Area:
membrane trafficking
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhu C, Chen Y, Isupov MN, Littlechild JA, Sun L, Liu X, Wang Q, Gong H, Dong P, Zhang N, Wu Y. Structural Insights into a Novel Esterase from the East Pacific Rise and Its Improved Thermostability by a Semirational Design. Journal of Agricultural and Food Chemistry. PMID 33445864 DOI: 10.1021/acs.jafc.0c06338   
2021 Zhu C, Chen Y, Isupov MN, Littlechild JA, Sun L, Liu X, Wang Q, Gong H, Dong P, Zhang N, Wu Y. Structural Insights into a Novel Esterase from the East Pacific Rise and Its Improved Thermostability by a Semirational Design. Journal of Agricultural and Food Chemistry. PMID 33445864 DOI: 10.1021/acs.jafc.0c06338   
2021 Yang X, Wu Z, Gao J. Effects of conserved Arg20, Glu74 and Asp77 on the structure and function of a tau class glutathione S-transferase in rice. Plant Molecular Biology. PMID 33387174 DOI: 10.1007/s11103-020-01099-4   
2021 Ranjan B, Choi PH, Pillai S, Permaul K, Tong L, Singh S. Crystal structure of a thermophilic fungal cyanase and its implications on the catalytic mechanism for bioremediation. Scientific Reports. 11: 277. PMID 33431973 DOI: 10.1038/s41598-020-79489-3   
2021 Moore CJ, Go H, Shin E, Ha HJ, Song S, Ha NC, Kim YH, Cohen SN, Lee K. Substrate-dependent effects of quaternary structure on RNase E activity. Genes & Development. PMID 33446571 DOI: 10.1101/gad.335828.119   
2021 Moosmayer D, Hilpmann A, Hoffmann J, Schnirch L, Zimmermann K, Badock V, Furst L, Eaton JK, Viswanathan VS, Schreiber SL, Gradl S, Hillig RC. Crystal structures of the selenoprotein glutathione peroxidase 4 in its apo form and in complex with the covalently bound inhibitor ML162. Acta Crystallographica. Section D, Structural Biology. 77: 237-248. PMID 33559612 DOI: 10.1107/S2059798320016125   
2021 Zhao Y, Feng Q, Zhou X, Zhang Y, Lukman M, Jiang J, Ruiz-Carrillo D. Mycobacterium tuberculosis puromycin hydrolase displays a prolyl oligopeptidase fold and an acyl aminopeptidase activity. Proteins. PMID 33426726 DOI: 10.1002/prot.26044   
2021 Singh RK, Kumar D, Gourinath S. Phosphoserine aminotransferase has conserved active site from microbes to higher eukaryotes with minor deviations. Protein and Peptide Letters. PMID 33588715 DOI: 10.2174/0929866528666210215140231   
2021 Kumar A, Campomizzi CS, Jay N, Ferguson S, Scheffler EJ, Lioi J, Tu C, Qu J, Simons C, Estrada DF. Surface hydrophobics mediate functional dimerization of CYP121A1 of Mycobacterium tuberculosis. Scientific Reports. 11: 394. PMID 33431984 DOI: 10.1038/s41598-020-79545-y   
2021 Maiti A, Hou S, Schiffer CA, Matsuo H. Interactions of APOBEC3s with DNA and RNA. Current Opinion in Structural Biology. 67: 195-204. PMID 33486429 DOI: 10.1016/j.sbi.2020.12.004   
2021 Maiti A, Hou S, Schiffer CA, Matsuo H. Interactions of APOBEC3s with DNA and RNA. Current Opinion in Structural Biology. 67: 195-204. PMID 33486429 DOI: 10.1016/j.sbi.2020.12.004   
2021 Maiti A, Hou S, Schiffer CA, Matsuo H. Interactions of APOBEC3s with DNA and RNA. Current Opinion in Structural Biology. 67: 195-204. PMID 33486429 DOI: 10.1016/j.sbi.2020.12.004   
2021 Sheedlo MJ, Kenny S, Podkorytov IS, Brown K, Ma J, Iyer S, Hewitt CS, Arbough T, Mikhailovskii O, Flaherty DP, Wilson MA, Skrynnikov NR, Das C. Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA. Biochemistry. PMID 33583181 DOI: 10.1021/acs.biochem.0c00760   
2021 Iyer A, Reis RAG, Gannavaram S, Momin M, Spring-Connell AM, Orozco-Gonzalez Y, Agniswamy J, Hamelberg D, Weber IT, Gozem S, Wang S, Germann MW, Gadda G. A Single-Point Mutation in d-Arginine Dehydrogenase Unlocks a Transient Conformational State Resulting in Altered Cofactor Reactivity. Biochemistry. PMID 33630571 DOI: 10.1021/acs.biochem.1c00054   
2021 Zhang M, Zhang H, Li Q, Gao Y, Guo L, He L, Zang S, Guo X, Huang J, Li L. Structural Insights into the -Acting Enoyl Reductase in the Biosynthesis of Long-Chain Polyunsaturated Fatty Acids in . Journal of Agricultural and Food Chemistry. PMID 33587627 DOI: 10.1021/acs.jafc.0c07386   
2021 Gierse RM, Reddem ER, Alhayek A, Baitinger D, Hamid Z, Jakobi H, Laber B, Lange G, Hirsch AKH, Groves MR. Identification of a 1-deoxy-D-xylulose-5-phosphate synthase (DXS) mutant with improved crystallographic properties. Biochemical and Biophysical Research Communications. 539: 42-47. PMID 33421767 DOI: 10.1016/j.bbrc.2020.12.069   
2021 Han Y, Zhuang Q, Sun B, Lv W, Wang S, Xiao Q, Pang B, Zhou Y, Wang F, Chi P, Wang Q, Li Z, Zhu L, Li F, Deng D, et al. Crystal structure of steroid reductase SRD5A reveals conserved steroid reduction mechanism. Nature Communications. 12: 449. PMID 33469028 DOI: 10.1038/s41467-020-20675-2   
2021 Kitagawa M, Ito N, Matsumoto Y, Saito M, Tamura T, Kusakabe H, Inagaki K, Imada K. Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from . Journal of Structural Biology: X. 5: 100044. PMID 33554108 DOI: 10.1016/j.yjsbx.2021.100044   
2021 Schriever K, Saenz-Mendez P, Rudraraju RS, Hendrikse NM, Hudson EP, Biundo A, Schnell R, Syrén PO. Engineering of Ancestors as a Tool to Elucidate Structure, Mechanism, and Specificity of Extant Terpene Cyclase. Journal of the American Chemical Society. PMID 33496585 DOI: 10.1021/jacs.0c10214   
2021 Karan S, Behl A, Sagar A, Bandyopadhyay A, Saxena AK. Structural studies on Mycobacterium tuberculosis HddA enzyme using small angle X-ray scattering and dynamics simulation techniques. International Journal of Biological Macromolecules. 171: 28-36. PMID 33412198 DOI: 10.1016/j.ijbiomac.2020.12.191   
2021 Miciaccia M, Belviso BD, Iaselli M, Cingolani G, Ferorelli S, Cappellari M, Loguercio Polosa P, Perrone MG, Caliandro R, Scilimati A. Three-dimensional structure of human cyclooxygenase (hCOX)-1. Scientific Reports. 11: 4312. PMID 33619313 DOI: 10.1038/s41598-021-83438-z   
2021 Huang J, Fraser ME. Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase. Acta Crystallographica. Section D, Structural Biology. 77: 357-368. PMID 33645539 DOI: 10.1107/S2059798321000334   
2021 Lohithakshan A, Narayanasamy R, Potteth US, Keshava S, Nagaraja V, Usharani D, Kumar R. Molecular insights into the mechanism of substrate binding and catalysis of bifunctional FAD synthetase from Staphylococcus aureus. Biochimie. PMID 33516756 DOI: 10.1016/j.biochi.2021.01.013   
2021 Perez-Garcia P, Kobus S, Gertzen CGW, Hoeppner A, Holzscheck N, Strunk CH, Huber H, Jaeger KE, Gohlke H, Kovacic F, Smits SHJ, Streit WR, Chow J. A promiscuous ancestral enzyme´s structure unveils protein variable regions of the highly diverse metallo-β-lactamase family. Communications Biology. 4: 132. PMID 33514861 DOI: 10.1038/s42003-021-01671-8   
2021 Caliandro R, Polsinelli I, Demitri N, Musiani F, Martens S, Benini S. The structural and functional characterization of Malus domestica double bond reductase MdDBR provides insights towards the identification of its substrates. International Journal of Biological Macromolecules. 171: 89-99. PMID 33412202 DOI: 10.1016/j.ijbiomac.2020.12.190   
2021 Zhu W, McQuarrie S, Grüschow S, McMahon SA, Graham S, Gloster TM, White MF. The CRISPR ancillary effector Can2 is a dual-specificity nuclease potentiating type III CRISPR defence. Nucleic Acids Research. PMID 33590098 DOI: 10.1093/nar/gkab073   
2021 Jones LB, Wang X, Gullapalli JS, Kunz DA. Characterization of the Nit6803 nitrilase homolog from the cyanotroph NCIMB 11764. Biochemistry and Biophysics Reports. 25: 100893. PMID 33506113 DOI: 10.1016/j.bbrep.2020.100893   
2021 Collet L, Vander Wauven C, Oudjama Y, Galleni M, Dutoit R. Glycoside hydrolase family 5: structural snapshots highlighting the involvement of two conserved residues in catalysis. Acta Crystallographica. Section D, Structural Biology. 77: 205-216. PMID 33559609 DOI: 10.1107/S2059798320015557   
2021 Hemmadi V, Biswas M. Dramatic Changes in Oligomerization Property Caused by Single Residue Deletion in Staphylococcus aureus Enolase. Molecular Biotechnology. PMID 33385272 DOI: 10.1007/s12033-020-00291-7   
2021 Di Nardo G, Zhang C, Marcelli AG, Gilardi G. Molecular and Structural Evolution of Cytochrome P450 Aromatase. International Journal of Molecular Sciences. 22. PMID 33435208 DOI: 10.3390/ijms22020631   
2021 Messenlehner J, Hetman M, Tripp A, Wallner S, Macheroux P, Gruber K, Daniel B. The catalytic machinery of the FAD-dependent AtBBE-like protein 15 for alcohol oxidation: Y193 and Y479 form a catalytic base, Q438 and R292 an alkoxide binding site. Archives of Biochemistry and Biophysics. 108766. PMID 33485849 DOI: 10.1016/j.abb.2021.108766   
2021 Zeug M, Markovic N, Iancu CV, Tripp J, Oreb M, Choe JY. Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists. Scientific Reports. 11: 3056. PMID 33542397 DOI: 10.1038/s41598-021-82660-z   
2021 Barnawi H, Woodward L, Fava N, Roubakha M, Shaw SD, Kubinec C, Naismith JH, Creuzenet C. Structure-function studies of the C3/C5 epimerases and C4 reductases of the Campylobacter jejuni capsular heptose modification pathways. The Journal of Biological Chemistry. 100352. PMID 33524389 DOI: 10.1016/j.jbc.2021.100352   
2021 Guo X, Söderholm A, Kanchugal P S, Isaksen GV, Warsi O, Eckhard U, Trigüis S, Gogoll A, Jerlström-Hultqvist J, Åqvist J, Andersson DI, Selmer M. Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family. Elife. 10. PMID 33567250 DOI: 10.7554/eLife.61818   
2021 Chen L, Zhao X, He Y, Yang H. Cloning, purification and characterisation of cytosolic fructose-1,6-bisphosphatase from mung bean (Vigna radiata). Food Chemistry. 347: 128973. PMID 33444888 DOI: 10.1016/j.foodchem.2020.128973   
2021 Kwiatkowski M, Wong A, Kozakiewicz A, Gehring C, Jaworski K. A tandem motif-based and structural approach can identify hidden functional phosphodiesterases. Computational and Structural Biotechnology Journal. 19: 970-975. PMID 33613864 DOI: 10.1016/j.csbj.2021.01.036   
2021 Seo GY, Lee HS, Kim H, Cho S, Na JG, Yeon YJ, Lee J. A novel hyperthermophilic methylglyoxal synthase: molecular dynamic analysis on the regional fluctuations. Scientific Reports. 11: 2538. PMID 33510339 DOI: 10.1038/s41598-021-82078-7   
2021 Liu Z, Li J, Jie C, Wu B, Hao N. A multifunctional α-amylase BSGH13 from Bacillus subtilis BS-5 possessing endoglucanase and xylanase activities. International Journal of Biological Macromolecules. PMID 33421464 DOI: 10.1016/j.ijbiomac.2021.01.003   
2021 Benkoulouche M, Ben Imeddourene A, Barel LA, Le Heiget G, Pizzut S, Kulyk H, Bellvert F, Bozonnet S, Mulard LA, Remaud-Siméon M, Moulis C, André I. Redirecting substrate regioselectivity using engineered ΔN-GBD-CD2 branching sucrases for the production of pentasaccharide repeating units of S. flexneri 3a, 4a and 4b haptens. Scientific Reports. 11: 2474. PMID 33510212 DOI: 10.1038/s41598-021-81719-1   
2021 Guo Y, Zhou D, Zhang H, Zhang NN, Qi X, Chen X, Chen Q, Li J, Ge H, Teng YB. Structural insights into a new substrate binding mode of a histidine acid phosphatase from Legionella pneumophila. Biochemical and Biophysical Research Communications. 540: 90-94. PMID 33450485 DOI: 10.1016/j.bbrc.2020.12.070   
2021 Uggowitzer KA, Habibi Y, Wei W, Moitessier N, Thibodeaux CJ. Mutations in Dynamic Structural Elements Alter the Kinetics and Fidelity of the Multifunctional Class II Lanthipeptide Synthetase, HalM2. Biochemistry. PMID 33507068 DOI: 10.1021/acs.biochem.0c00919   
2021 Kim Y, Wower J, Maltseva N, Chang C, Jedrzejczak R, Wilamowski M, Kang S, Nicolaescu V, Randall G, Michalska K, Joachimiak A. Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2. Communications Biology. 4: 193. PMID 33564093 DOI: 10.1038/s42003-021-01735-9   
2021 Gonzalez-Ordenes F, Bravo-Moraga F, Gonzalez E, Hernandez-Cabello L, Alzate-Morales J, Victoria G, Castro-Fernandez V. Crystal structure and molecular dynamics simulations of a promiscuous ancestor reveal residues and an epistatic interaction involved in substrate binding and catalysis in the ATP-dependent vitamin kinase family members. Protein Science : a Publication of the Protein Society. PMID 33555078 DOI: 10.1002/pro.4040   
2021 Jeong BG, Na JH, Bae DW, Park SB, Lee HS, Cha SS. Crystal structure of AmpC BER and molecular docking lead to the discovery of broad inhibition activities of halisulfates against β-lactamases. Computational and Structural Biotechnology Journal. 19: 145-152. PMID 33425247 DOI: 10.1016/j.csbj.2020.12.015   
2021 Zhao J, Tandrup T, Bissaro B, Barbe S, Poulsen JN, André I, Dumon C, Lo Leggio L, O'Donohue MJ, Fauré R. Probing the determinants of the transglycosylation/hydrolysis partition in a retaining α-l-arabinofuranosidase. New Biotechnology. PMID 33524585 DOI: 10.1016/j.nbt.2021.01.008   
2021 Rodríguez-Salarichs J, García de Lacoba M, Prieto A, Martínez MJ, Barriuso J. Versatile Lipases from the -like Family: A Mechanistic Insight Using Computational Approaches. Journal of Chemical Information and Modeling. PMID 33555857 DOI: 10.1021/acs.jcim.0c01151   
2021 Jiménez-Ortigosa C, Jiang J, Chen M, Kuang X, Healey KR, Castellano P, Boparai N, Ludtke SJ, Perlin DS, Dai W. Preliminary Structural Elucidation of β-(1,3)-glucan Synthase from Using Cryo-Electron Tomography. Journal of Fungi (Basel, Switzerland). 7. PMID 33562124 DOI: 10.3390/jof7020120   
2021 Wang Y, Niu Y, Zhang Z, Gable K, Gupta SD, Somashekarappa N, Han G, Zhao H, Myasnikov AG, Kalathur RC, Dunn TM, Lee CH. Structural insights into the regulation of human serine palmitoyltransferase complexes. Nature Structural & Molecular Biology. PMID 33558761 DOI: 10.1038/s41594-020-00551-9   
2021 Zong G, Jork N, Hostachy S, Fiedler D, Jessen HJ, Shears SB, Wang H. New structural insights reveal an expanded reaction cycle for inositol pyrophosphate hydrolysis by human DIPP1. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21275. PMID 33475202 DOI: 10.1096/fj.202001489R   
2021 Herbst-Gervasoni CJ, Christianson DW. X-ray Crystallographic Snapshots of Substrate Binding in the Active Site of Histone Deacetylase 10. Biochemistry. PMID 33449614 DOI: 10.1021/acs.biochem.0c00936