John J. Kozak, Ph.D. - Publications

Affiliations: 
DePaul University, Chicago, IL, United States 
Website:
http://chemistry.depaul.edu/faculty/JJK.html

104 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kim KS, Kim C, Karniadakis GE, Lee EK, Kozak JJ. Density-dependent finite system-size effects in equilibrium molecular dynamics estimation of shear viscosity: Hydrodynamic and configurational study. The Journal of Chemical Physics. 151: 104101. PMID 31521071 DOI: 10.1063/1.5113751  0.64
2019 Han MH, Kim WJ, Lee EK, Kim H, Lebegue S, Kozak JJ. Theoretical study of the microscopic origin of magnetocrystalline anisotropy in Fe16N2 and its alloys: comparison with the other L10 alloys. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 31491781 DOI: 10.1088/1361-648X/ab422c  0.64
2019 Balakrishnan V, Abad E, Abil T, Kozak JJ. First-passage properties of mortal random walks: Ballistic behavior, effective reduction of dimensionality, and scaling functions for hierarchical graphs. Physical Review. E. 99: 062110. PMID 31330722 DOI: 10.1103/PhysRevE.99.062110  0.56
2015 Abad E, Kozak JJ. Competing reaction processes on a lattice as a paradigm for catalyst deactivation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 022106. PMID 25768457 DOI: 10.1103/PhysRevE.91.022106  0.56
2015 Abad E, Kozak JJ. Competing reaction processes on a lattice as a paradigm for catalyst deactivation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 91. DOI: 10.1103/PhysRevE.91.022106  0.56
2014 Kozak JJ, Garza-López RA, Abad E. Lattice statistical theory of random walks on a fractal-like geometry Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 89. PMID 24730829 DOI: 10.1103/PhysRevE.89.032147  1
2014 Gray HB, Warren JJ, Winkler JR, Kozak JJ. A Euclidean perspective on the unfolding of azurin: chain motion. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 19: 555-63. PMID 24378983 DOI: 10.1007/s00775-013-1077-2  1
2013 Warren JJ, Gray HB, Winkler JR, Kozak JJ. A Euclidean Perspective on the Unfolding of Azurin: Spatial Correlations. Molecular Physics. 111: 922-929. PMID 23853392 DOI: 10.1080/00268976.2012.758324  1
2013 Balakrishnan V, Kozak JJ. Analytic expression for the mean time to absorption for a random walker on the Sierpinski fractal. III. the effect of non-nearest-neighbor jumps Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 88. DOI: 10.1103/PhysRevE.88.052139  1
2013 Warren JJ, Gray HB, Winkler JR, Kozak JJ. Euclidean perspective on the unfolding of azurin: Angular correlations Molecular Physics. 111: 3762-3769. DOI: 10.1080/00268976.2013.787153  1
2013 Warren JJ, Gray HB, Winkler JR, Kozak JJ. Euclidean perspective on the unfolding of azurin: Angular correlations Molecular Physics. 111: 3762-3769. DOI: 10.1080/00268976.2013.787153  1
2013 Piasecki J, Szymczak P, Kozak JJ. Communication: Nonexistence of a critical point within the Kirkwood superposition approximation Journal of Chemical Physics. 139. DOI: 10.1063/1.4824388  1
2013 Piasecki J, Szymczak P, Kozak JJ. Stability of phases of a square-well fluid within superposition approximation Journal of Chemical Physics. 138. DOI: 10.1063/1.4801329  1
2013 Garza-López RA, Kozak JJ. Asymptotic scaling for Euclidean lattices Understanding Complex Systems. 579-586. DOI: 10.1007/978-3-642-34070-3-43  1
2013 Garza-López RA, Kozak JJ. Asymptotic scaling for Euclidean lattices Understanding Complex Systems. 579-586. DOI: 10.1007/978-3-642-34070-3-43  0.2
2012 Gray HB, Winkler JR, Kozak JJ. Signatures of unfolding in the early stages of protein denaturation Molecular Physics. 110: 419-429. DOI: 10.1080/00268976.2011.651168  1
2012 Nicolis G, Kozak JJ, Nicolis C. Modelling early stages of sequential versus hierarchical self-assembly in supramolecular architectures Molecular Physics. 110: 395-402. DOI: 10.1080/00268976.2011.648966  1
2012 Garza-López RA, Brzezinski J, Kozak JJ. Reaction efficiency of diffusion-controlled processes on finite, aperiodic planar lattices - III: Supramolecular architectures Chemical Physics Letters. 538: 86-92. DOI: 10.1016/j.cplett.2012.04.032  1
2012 Kozak JJ. Geometric constraints in the self-assembly of mineral dendrites and platelets Advances in Chemical Physics. 151: 193-222.  1
2011 Piasecki J, Szymczak P, Kozak JJ. Structural transitions in hypersphere fluids: predictions of Kirkwood's approximation. The Journal of Chemical Physics. 135: 084509. PMID 21895201 DOI: 10.1063/1.3622597  1
2011 Urie KG, Pletneva E, Gray HB, Winkler JR, Kozak JJ. Geometrical Analysis of Cytochrome c Unfolding. Molecular Physics. 109: 301-313. PMID 21379364 DOI: 10.1080/00268976.2010.521202  1
2011 Kozak JJ, Nicolis G. Modeling the early stages of self-assembly in nanophase materials. II. Role of symmetry and dimensionality. The Journal of Chemical Physics. 134: 064701. PMID 21322715 DOI: 10.1063/1.3541822  1
2011 Gray HB, Winkler JR, Kozak JJ. Unfolding four-helix bundles Molecular Physics. 109: 905-916. DOI: 10.1080/00268976.2011.558855  1
2011 Garza-López RA, Kozak JJ. Transition behavior on lattices with ladders. Part II: Sensitivity to coupling Chemical Physics Letters. 514: 88-93. DOI: 10.1016/j.cplett.2011.08.019  1
2010 Piasecki J, Szymczak P, Kozak JJ. Prediction of a structural transition in the hard disk fluid. The Journal of Chemical Physics. 133: 164507. PMID 21033805 DOI: 10.1063/1.3491039  1
2010 Bentz JL, Turner JW, Kozak JJ. Analytic expression for the mean time to absorption for a random walker on the Sierpinski gasket. II. The eigenvalue spectrum. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 011137. PMID 20866595 DOI: 10.1103/PhysRevE.82.011137  1
2010 Lutsko JF, Basios V, Nicolis G, Kozak JJ, Sleutel M, Maes D. Kinetic rougheninglike transition with finite nucleation barrier. The Journal of Chemical Physics. 132: 035102. PMID 20095752 DOI: 10.1063/1.3294561  1
2010 Velarde MG, Chetverikov AP, Ebeling W, Hennig D, Kozak JJ. On the mathematical modeling of soliton-mediated long-range electron transfer International Journal of Bifurcation and Chaos. 20: 185-194. DOI: 10.1142/S0218127410025508  1
2010 Urie KG, Kozak JJ, Abad E. Synchronous vs asynchronous diffusionreaction processes involving geminate radical pairs Physica a: Statistical Mechanics and Its Applications. 389: 4061-4070. DOI: 10.1016/j.physa.2010.06.009  1
2010 Pawełek K, Kozak JJ, Grzywna ZJ. Asynchronous motion and transport of K+ in the KcsA selectivity filter Physica a: Statistical Mechanics and Its Applications. 389: 3013-3022. DOI: 10.1016/j.physa.2010.03.046  1
2009 Kozak JJ, Brzezinski J, Garza-López RA. Reaction efficiency of diffusion-controlled processes on finite, planar arrays. II. Crystal surfaces. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 021116. PMID 19792086 DOI: 10.1103/PhysRevE.80.021116  1
2009 Urie KG, Angulo D, Lee JC, Kozak JJ, Gray HB, Winkler JR. Synchronous vs asynchronous chain motion in alpha-synuclein contact dynamics. The Journal of Physical Chemistry. B. 113: 522-30. PMID 19099437 DOI: 10.1021/jp806727e  1
2009 Garza-López RA, Brzezinski J, Low D, Gomez U, Raju S, Ramirez C, Kozak JJ. Reaction efficiency of diffusion-controlled processes on finite aperiodic planar arrays. II. Potential effects Chemical Physics Letters. 478: 51-55. DOI: 10.1016/j.cplett.2009.07.042  1
2008 Kozak JJ, Brzezinski J, Rice SA. A conjecture concerning the symmetries of planar nets and the hard disk freezing transition. The Journal of Physical Chemistry. B. 112: 16059-69. PMID 19368021 DOI: 10.1021/jp806287e  1
2008 Garza-López RA, Bouchard P, Nicolis G, Sleutel M, Brzezinski J, Kozak JJ. Kinetics of docking in postnucleation stages of self-assembly. The Journal of Chemical Physics. 128: 114701. PMID 18361595 DOI: 10.1063/1.2876271  1
2008 Garza-López RA, Kaufman A, Patel R, Chang J, Brzezinski J, Kozak JJ. Reaction efficiency of diffusion-controlled processes on finite, aperiodic planar arrays Chemical Physics Letters. 459: 137-140. DOI: 10.1016/j.cplett.2008.04.127  1
2007 Kozak JJ, Nicolis C, Nicolis G. Modeling the early stages of self-assembly in nanophase materials. The Journal of Chemical Physics. 126: 154701. PMID 17461653 DOI: 10.1063/1.2717160  1
2007 Lee JC, Lai BT, Kozak JJ, Gray HB, Winkler JR. Alpha-synuclein tertiary contact dynamics. The Journal of Physical Chemistry. B. 111: 2107-12. PMID 17279794 DOI: 10.1021/jp068604y  1
2007 Abad E, Kozak JJ. Fluctuation assisted diffusion through ion channels Physica a: Statistical Mechanics and Its Applications. 380: 172-190. DOI: 10.1016/j.physa.2007.02.092  1
2007 Berthod A, Kozak JJ, Anderson JL, Ding J, Armstrong DW. Ionic liquid-alkane association in dilute solutions Theoretical Chemistry Accounts. 117: 127-135. DOI: 10.1007/s00214-006-0155-8  1
2006 Bentz JL, Kozak JJ. Aggregation of dipolar colloidal particles: geometric effects. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 011414. PMID 16486147 DOI: 10.1103/PhysRevE.73.011414  1
2006 Abad E, Kozak JJ. Inverted regions induced by geometric constraints on a classical encounter-controlled binary reaction Physica a: Statistical Mechanics and Its Applications. 370: 501-524. DOI: 10.1016/j.physa.2006.04.069  1
2006 Bentz JL, Kozak JJ. Influence of geometry on light harvesting in dendrimeric systems. II. nth-nearest neighbor effects and the onset of percolation Journal of Luminescence. 121: 62-74. DOI: 10.1016/j.jlumin.2005.10.004  1
2006 Garza-López RA, Linares A, Yoo A, Evans G, Kozak JJ. Invariance relations for random walks on simple cubic lattices Chemical Physics Letters. 421: 287-294. DOI: 10.1016/j.cplett.2006.01.086  1
2005 Bentz JL, Kozak JJ, Nicolis G. Efficiency of encounter-controlled reaction between diffusing reactants in a finite lattice: Non-nearest-neighbor effects Physica a: Statistical Mechanics and Its Applications. 353: 73-84. DOI: 10.1016/j.physa.2005.02.006  1
2005 Garza-López RA, Kozak JJ. Invariance relations for random walks on square-planar lattices Chemical Physics Letters. 406: 38-43. DOI: 10.1016/j.cplett.2005.02.078  1
2003 Nicolis C, Nicolis G, Kozak JJ. Lattice model of the early stages of the electrification of a cloud. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 061104. PMID 16241196  1
2003 Kozak JJ, Basios V, Nicolis G. Geometrical effects in protein nucleation. Biophysical Chemistry. 105: 495-501. PMID 14499913 DOI: 10.1016/S0301-4622(03)00110-8  1
2003 Abad E, Nicolis G, Bentz JL, Kozak JJ. Synchronous vs. asynchronous dynamics of diffusion-controlled reactions Physica a: Statistical Mechanics and Its Applications. 326: 69-87. DOI: 10.1016/S0378-4371(03)00272-3  1
2003 Bentz JL, Kozak JJ, Abad E, Nicolis G. Efficiency of encounter-controlled reaction between diffusing reactants in a finite lattice: Topology and boundary effects Physica a: Statistical Mechanics and Its Applications. 326: 55-68. DOI: 10.1016/S0378-4371(03)00271-1  1
2003 Garza-López RA, Kozak JJ. Invariance relations for random walks on hexagonal lattices Chemical Physics Letters. 371: 365-370. DOI: 10.1016/S0009-2614(03)00270-7  1
2002 Kozak JJ, Balakrishnan V. Exact formula for the mean length of a random walk on the Sierpinski tower International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 12: 2379-2385. DOI: 10.1142/S0218127402006138  1
2002 Garza-López RA, Lee CH, Lin D, López-Mena G, Niu D, Kozak JJ. Diffusion-reaction processes involving interacting dipoles on Euclidean vs. fractal architectures Chemical Physics Letters. 356: 313-317. DOI: 10.1016/S0009-2614(02)00336-6  1
2001 Nicolis C, Kozak JJ, Nicolis G. Encounter-controlled reactions between interacting walkers in finite lattices: Complex kinetics and many-body effects Journal of Chemical Physics. 115: 663-670. DOI: 10.1063/1.1377880  1
2001 Kozak JJ, Nicolis C, Nicolis G, Turro NJ. Modeling of diffusion-reaction processes involving geminate radical pairs Journal of Physical Chemistry A. 105. DOI: 10.1021/jp012588h  1
2001 Kozak JJ, Nicolis C, Nicolis G, Turro NJ. Modeling of diffusion-reaction processes involving geminate radical pairs Journal of Physical Chemistry A. 105.  1
2000 Garza-López RA, Naya L, Kozak JJ. Tortuosity factor for permeant flow through a fractal solid Journal of Chemical Physics. 112: 9956-9960. DOI: 10.1063/1.481631  1
2000 Kozak JJ. Chemical reactions and reaction efficiency in compartmentalized systems Advances in Chemical Physics. 115: 245-406.  1
2000 Kozak JJ. Random walks on a fractal solid Journal of Statistical Physics. 101: 405-414.  1
1999 Garza-López RA, Kozak JJ. Reaction efficiency on the surface of a porous catalyst Journal of Physical Chemistry B. 103: 9200-9204.  1
1999 Garza-López RA, Ngo M, Delgado E, Kozak JJ. Recurrence and trapping on a fractal solid Chemical Physics Letters. 306: 411-415.  1
1999 Kozak JJ. Kinetic transitions in diffusion-reaction space. II. Geometrical effects Journal of Chemical Physics. 110: 3056-3062.  1
1998 Davidson R, Kozak JJ. Stochastic approach to the study of atomistic processes in the early stages of thin-film growth. 2. Island formation Journal of Physical Chemistry B. 102: 7400-7405.  1
1998 Davidson R, Kozak JJ. A stochastic approach to the study of atomistic processes in the early stages of thin-film growth Journal of Physical Chemistry B. 102: 7393-7399.  1
1997 Kozak JJ. Random walks on the Menger sponge Chemical Physics Letters. 275: 199-202.  1
1995 Kozak JJ, Mandeville JB. Influence of swelling on reaction efficieny in intercalated clay minerals. 3. Ion-dipole reactant pairs Journal of Physical Chemistry. 99: 12933-12940.  1
1995 Garza-López RA, Byun D, Orellana K, Partikian A, Siew D, Yu A, Kozak JJ. "Order-disorder" phenomena in a diffusion-reaction model of interacting dipoles on a surface The Journal of Chemical Physics. 103: 9413-9417.  1
1992 Mandeville JB, Kozak JJ. Correlation effects and reduction of dimensionality in interfacial reactions Journal of the American Chemical Society. 114: 6139-6145.  1
1992 Garza-López RA, Kozak JJ. Effective dimensionality of layered diffusion spaces Journal of Physical Chemistry. 96: 6027-6030.  1
1992 Garza-López RA, Kozak JJ. Sieving of linear r-mers through a structured medium Journal of Physical Chemistry. 96: 9457-9461.  1
1991 Kozak JJ. Analytic solution for random walks on finite d-dimensional lattices with a single trap. Physical Review. A. 44: 3519-3524. PMID 9906369 DOI: 10.1103/PhysRevA.44.3519  1
1991 Garza-Lopez RA, Kozak JJ. Calculation of the effective dimensionality of layered diffusion spaces. Application to diffusion-controlled processes in smectite clays Journal of Physical Chemistry. 95: 3278-3281.  1
1990 Rudra JK, Kozak JJ. Spectral dimension of regular and fractal lattices Physics Letters A. 151: 429-432. DOI: 10.1016/0375-9601(90)90917-D  1
1990 Garza-López RA, Rudra JK, Kozak JJ. Diffusion of a dimer through a structured medium Chemical Physics Letters. 174: 278-282. DOI: 10.1016/0009-2614(90)85345-D  1
1990 Politowicz PA, Kozak JJ. Influence of structure on reaction efficiency in surface catalysis. 3. Entropic and dynamical aspects Journal of Physical Chemistry. 94: 7272-7279.  1
1990 Garza-López RA, Rudra JK, Davidson R, Kozak JJ. Kinetic changes arising from surface defects and inhomogeneities Journal of Physical Chemistry. 94: 8315-8322.  1
1989 Garza-López RA, Kozak JJ. Pattern development in cellular automata triggered by site-specific reactive processes: Dynamical aspects. Physical Review. A. 40: 7325-7333. PMID 9902149 DOI: 10.1103/PhysRevA.40.7325  1
1989 Politowicz PA, Leung LBS, Kozak JJ. Influence of swelling on reaction efficiency in intercalated clay minerals. 2. Pillared clays Journal of Physical Chemistry. 93: 923-926.  1
1989 Mandeville JB, Hurtubise DE, Flint R, Kozak JJ. Influence of multipolar correlations and surface imperfections on the efficiency of diffusion-controlled reactive processes on molecular organizates and colloidal catalysts Journal of Physical Chemistry. 93: 7876-7887.  1
1989 Politowicz PA, Garza-Lopez RA, Hurtubise DE, Kozak JJ. Influence of surface structure on the kinetics of diffusion-controlled reactive processes on molecular organizates and colloidal catalysts Journal of Physical Chemistry. 93: 3728-3735.  1
1988 Boulu LG, Kozak JJ. Simulations of fluorescence quenching using theoretical models of energy and electron transfer in random arrays applications to experiments on monolayers of chlorophylls and quinones Molecular Physics. 65: 193-207. DOI: 10.1080/00268978800100951  1
1988 Mandeville JB, Golub J, Kozak JJ. Correlation effects on reaction efficiency in monolayer domains Chemical Physics Letters. 143: 117-122. DOI: 10.1016/0009-2614(88)87023-4  1
1988 Lenoir PM, Sassoon RE, Kozak JJ. Computer simulations of photochemical water cleavage systems. 2. Effects of particle size and ion concentration on the production of hydrogen from water mediated with a colloidal catalyst Journal of Physical Chemistry. 92: 2526-2536.  1
1988 Politowicz PA, Kozak JJ. Sequestering and the influence of domain structure on excimer formation in spread monolayers Langmuir. 4: 305-320.  1
1988 Mandeville JB, Golub J, Kozak JJ. Multipolar correlations between reactants in crystalline and semiamorphous zeolites Journal of Physical Chemistry. 92: 1575-1584.  1
1987 Boulu LG, Kozak JJ. Simulations of energy transfer and trapping in two-dimensional disordered systems Molecular Physics. 62: 1449-1465. DOI: 10.1080/00268978700103101  1
1987 Politowicz PA, Kozak JJ. Influence of channel geometry on sorption in zeolites Molecular Physics. 62: 939-960. DOI: 10.1080/00268978700102681  1
1987 Lee PH, Kozak JJ. Calculation of the tortuosity factor in single-phase transport through a structured medium The Journal of Chemical Physics. 86: 4617-4627.  1
1986 Politowicz PA, Kozak JJ. Relative importance of lattice valency versus system dimensionality in markovian models of diffusion-controlled processes Chemical Physics Letters. 127: 257-262. DOI: 10.1016/0009-2614(86)80269-X  1
1986 Sassoon RE, Lenoir PM, Kozak JJ. Computer simulations of photochemical water cleavage systems. 1. A kinetic model for the production of hydrogen on a colloidal catalyst Journal of Physical Chemistry. 90: 4654-4663.  1
1986 Boulu LG, Patterson LK, Chauvet JP, Kozak JJ. Theoretical investigation of fluorescence concentration quenching in two-dimensional disordered systems. Application to chlorophyll a in monolayers of dioleylphosphatidylcholine The Journal of Chemical Physics. 86: 503-507.  1
1985 Politowicz PA, Kozak JJ. Influence of structure on reaction efficiency in surface catalysis. 1. Sensitivity to multiplet concentration and configuration Langmuir. 1: 429-443.  1
1985 Davidson R, Kozak JJ. Exact calculation of the lineshape and the scattering operator for a model of a two-level atom interacting with a continuous spectrum of radiation Journal of Mathematical Physics. 26: 556-565.  1
1985 Staten GJ, Musho MK, Kozak JJ. Influence of structure on reaction efficiency in surface catalysis. 2. Reactivity at terraces, ledges, and kinks Langmuir. 1: 443-452.  1
1985 Siders P, Kozak JJ. Thermodynamic self-consistency for hard spheres at low density The Journal of Chemical Physics. 82: 4257-4263.  1
1985 Infelta PP, Ebbesen TW, Lenoir P, Kozak JJ. Comment on "factors affecting the efficiency of photochemical water cleavage systems. The reaction between O2 and the reduced electron acceptor" [1] (multiple letters) Journal of Physical Chemistry. 89: 553-554.  1
1985 Miller KE, Kozak JJ. Theory of intramolecular electron transfer reactions in anion radicals of nitrobenzyl halides Journal of Physical Chemistry. 89: 401-403.  1
1982 Patterson LK, MacCarthy JE, Kozak JJ. Photoinduced structural transformations in mixed monolayer assemblies Chemical Physics Letters. 89: 435-437. DOI: 10.1016/0009-2614(82)80015-8  1
1981 MacCarthy JE, Kozak JJ. A dynamic model for in vivo virus replication. Journal of Theoretical Biology. 90: 265-81. PMID 7311581 DOI: 10.1016/0022-5193(81)90046-1  1
1981 MacCarthy JE, Kozak JJ, Green KA, Luks KD. A variational approach to the statistical mechanics of hard discs and hard spheres Molecular Physics. 44: 17-31. DOI: 10.1080/00268978100102261  1
1980 Duman JG, Patterson JL, Kozak JJ, DeVries AL. Isopiestic determination of water binding by fish antifreeze glycoproteins. Biochimica Et Biophysica Acta. 626: 332-6. PMID 6260153 DOI: 10.1016/0005-2795(80)90127-0  1
1977 Benham CJ, Kozak JJ. Denaturation: an example of a catastrophe. III. Phase diagrams for multistate transformations. Journal of Theoretical Biology. 66: 679-93. PMID 881852 DOI: 10.1016/0022-5193(77)90238-7  1
1974 Kozak JJ, Benham CJ. Denaturation: an example of a catastrophe. Proceedings of the National Academy of Sciences of the United States of America. 71: 1977-81. PMID 4525309  1
1965 Tobolsky AV, Kozak JJ, Canter NH. Diffuse phase transitions: Specific-heat anomaly Physical Review. 138: A651-A660. DOI: 10.1103/PhysRev.138.A651  1
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