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Yu Feng - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Li Y, Qi J, Liu Y, Zheng Y, Zhu H, Zang Y, Guan X, Xie S, Zhao H, Fu Y, Xiang H, Zhang W, Chen H, Liu H, Zhao Y, ... Feng Y, et al. High-Throughput Screening of Functional Neo-Antigens and Their Specific T-Cell Receptors via the Jurkat Reporter System Combined with Droplet Microfluidics. Analytical Chemistry. PMID 37300490 DOI: 10.1021/acs.analchem.3c01754  0.696
2023 Zhao M, Gao B, Wen A, Feng Y, Lu YQ. Structural basis of λCII-dependent transcription activation. Structure (London, England : 1993). PMID 37269829 DOI: 10.1016/j.str.2023.05.008  0.356
2023 Shi J, Feng Z, Xu J, Li F, Zhang Y, Wen A, Wang F, Song Q, Wang L, Cui H, Tong S, Chen P, Zhu Y, Zhao G, Wang S, ... Feng Y, et al. Structural insights into the transcription activation mechanism of the global regulator GlnR from actinobacteria. Proceedings of the National Academy of Sciences of the United States of America. 120: e2300282120. PMID 37216560 DOI: 10.1073/pnas.2300282120  0.515
2023 Shen L, Lai G, You L, Shi J, Wu X, Puiu M, Gu Z, Feng Y, Yuzenkova Y, Zhang Y. An SI3-σ arch stabilizes cyanobacteria transcription initiation complex. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219290120. PMID 37036976 DOI: 10.1073/pnas.2219290120  0.389
2023 Wu X, Yu C, Mu W, Gu Z, Feng Y, Zhang Y. The structural mechanism for transcription activation by Caulobacter crescentus GcrA. Nucleic Acids Research. PMID 36715319 DOI: 10.1093/nar/gkad016  0.363
2023 You L, Omollo EO, Yu C, Mooney RA, Shi J, Shen L, Wu X, Wen A, He D, Zeng Y, Feng Y, Landick R, Zhang Y. Structural basis for intrinsic transcription termination. Nature. PMID 36631609 DOI: 10.1038/s41586-022-05604-1  0.389
2022 Shi J, Wang L, Wen A, Wang F, Zhang Y, Yu L, Li F, Jin Y, Feng Z, Li J, Yang Y, Gao F, Zhang Y, Feng Y, Wang S, et al. Structural basis of three different transcription activation strategies adopted by a single regulator SoxS. Nucleic Acids Research. PMID 36243985 DOI: 10.1093/nar/gkac898  0.746
2022 Wen A, Zhao M, Jin S, Lu YQ, Feng Y. Structural basis of AlpA-dependent transcription antitermination. Nucleic Acids Research. PMID 35871295 DOI: 10.1093/nar/gkac608  0.374
2022 He D, You L, Wu X, Shi J, Wen A, Yan Z, Mu W, Fang C, Feng Y, Zhang Y. Pseudomonas aeruginosa SutA wedges RNAP lobe domain open to facilitate promoter DNA unwinding. Nature Communications. 13: 4204. PMID 35859063 DOI: 10.1038/s41467-022-31871-7  0.443
2022 Shi J, Wang F, Li F, Wang L, Xiong Y, Wen A, Jin Y, Jin S, Gao F, Feng Z, Li J, Zhang Y, Shang Z, Wang S, Feng Y, et al. Structural basis of transcription activation by Rob, a pleiotropic AraC/XylS family regulator. Nucleic Acids Research. 50: 5974-5987. PMID 35641097 DOI: 10.1093/nar/gkac433  0.567
2021 Wang F, Feng Y, Shang Z, Lin W. A unique binding between SspA and RNAP βNTH across low-GC Gram-negative bacteria facilitates SspA-mediated transcription regulation. Biochemical and Biophysical Research Communications. 583: 86-92. PMID 34735884 DOI: 10.1016/j.bbrc.2021.10.048  0.434
2021 Shi J, Li F, Wen A, Yu L, Wang L, Wang F, Jin Y, Jin S, Feng Y, Lin W. Structural basis of transcription activation by the global regulator Spx. Nucleic Acids Research. PMID 34530448 DOI: 10.1093/nar/gkab790  0.737
2021 Cai Z, Zhang S, Wu P, Ren Q, Wei P, Hong M, Feng Y, Wong CK, Tang H, Zeng H. A novel potential target of IL-35-regulated JAK/STAT signaling pathway in lupus nephritis. Clinical and Translational Medicine. 11: e309. PMID 33634995 DOI: 10.1002/ctm2.309  0.315
2021 Shi J, Wen A, Jin S, Gao B, Huang Y, Feng Y. Transcription activation by a sliding clamp. Nature Communications. 12: 1131. PMID 33602900 DOI: 10.1038/s41467-021-21392-0  0.321
2020 Shi J, Wen A, Zhao M, Jin S, You L, Shi Y, Dong S, Hua X, Zhang Y, Feng Y. Structural basis of Mfd-dependent transcription termination. Nucleic Acids Research. PMID 33068413 DOI: 10.1093/nar/gkaa904  0.459
2020 Fang C, Philips SJ, Wu X, Chen K, Shi J, Shen L, Xu J, Feng Y, O'Halloran TV, Zhang Y. CueR activates transcription through a DNA distortion mechanism. Nature Chemical Biology. PMID 32989300 DOI: 10.1038/s41589-020-00653-x  0.445
2020 Wang F, Shi J, He D, Tong B, Zhang C, Wen A, Zhang Y, Feng Y, Lin W. Structural basis for transcription inhibition by E. coli SspA. Nucleic Acids Research. PMID 32785630 DOI: 10.1093/Nar/Gkaa672  0.607
2019 Xu J, Cui K, Shen L, Shi J, Li L, You L, Fang C, Zhao G, Feng Y, Yang B, Zhang Y. Crl activates transcription by stabilizing active conformation of the master stress transcription initiation factor. Elife. 8. PMID 31846423 DOI: 10.7554/Elife.50928  0.539
2019 Yari H, Jin L, Teng L, Wang Y, Wu Y, Liu GZ, Gao W, Liang J, Xi Y, Feng YC, Zhang C, Zhang YY, Tabatabaee H, La T, Yang RH, et al. LncRNA REG1CP promotes tumorigenesis through an enhancer complex to recruit FANCJ helicase for REG3A transcription. Nature Communications. 10: 5334. PMID 31767869 DOI: 10.1038/S41467-019-13313-Z  0.314
2019 Shi J, Wen A, Zhao M, You L, Zhang Y, Feng Y. Structural basis of σ appropriation. Nucleic Acids Research. PMID 31392983 DOI: 10.1093/Nar/Gkz682  0.525
2019 You L, Shi J, Shen L, Li L, Fang C, Yu C, Cheng W, Feng Y, Zhang Y. Structural basis for transcription antitermination at bacterial intrinsic terminator. Nature Communications. 10: 3048. PMID 31296855 DOI: 10.1038/s41467-019-10955-x  0.397
2019 Shi J, Gao X, Tian T, Yu Z, Gao B, Wen A, You L, Chang S, Zhang X, Zhang Y, Feng Y. Structural basis of Q-dependent transcription antitermination. Nature Communications. 10: 2925. PMID 31266960 DOI: 10.1038/S41467-019-10958-8  0.461
2019 Fang C, Li L, Shen L, Shi J, Wang S, Feng Y, Zhang Y. Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Research. PMID 31131408 DOI: 10.1093/nar/gkz470  0.443
2019 Lin W, Mandal S, Degen D, Cho MS, Feng Y, Das K, Ebright RH. Structural basis of ECF-σ-factor-dependent transcription initiation. Nature Communications. 10: 710. PMID 30755604 DOI: 10.1038/s41467-019-08443-3  0.777
2019 Xu J, Cui K, Shen L, Shi J, Li L, You L, Fang C, Zhao G, Feng Y, Yang B, Zhang Y. Author response: Crl activates transcription by stabilizing active conformation of the master stress transcription initiation factor Elife. DOI: 10.7554/Elife.50928.Sa2  0.387
2019 Shi J, Wen A, Zhao M, You L, Zhang Y, Feng Y. CryoEM structure of sigma appropriation complex Nucleic Acids Research. 47: 9423-9432. DOI: 10.2210/Pdb6K4Y/Pdb  0.304
2019 Fang C, Li L, Shen L, Shi J, Wang S, Feng Y, Zhang Y. Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Research. 47: 7094-7104. DOI: 10.2210/Pdb6Jbq/Pdb  0.524
2019 You L, Shi J, Shen L, Li L, Fang C, Yu C, Cheng W, Feng Y, Zhang Y. Structural basis for transcription antitermination at bacterial intrinsic terminator. Nature Communications. 10: 3048-3048. DOI: 10.2210/Pdb6J9F/Pdb  0.482
2019 Lin W, Mandal S, Degen D, Cho, Feng Y, Das K, Ebright RH. Structural basis of ECF-sigma-factor-dependent transcription initiation. Nature Communications. 10: 710-710. DOI: 10.2210/Pdb6Dv9/Pdb  0.784
2017 Lin W, Mandal S, Degen D, Liu Y, Ebright YW, Li S, Feng Y, Zhang Y, Mandal S, Jiang Y, Liu S, Gigliotti M, Talaue M, Connell N, Das K, et al. Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. Molecular Cell. PMID 28392175 DOI: 10.1016/J.Molcel.2017.03.001  0.756
2016 Feng Y, Zhang Y, Ebright RH. Structural basis of transcription activation. Science (New York, N.Y.). 352: 1330-3. PMID 27284196 DOI: 10.1126/science.aaf4417  0.654
2015 Feng Y, Degen D, Wang X, Gigliotti M, Liu S, Zhang Y, Das D, Michalchuk T, Ebright YW, Talaue M, Connell N, Ebright RH. Structural Basis of Transcription Inhibition by CBR Hydroxamidines and CBR Pyrazoles. Structure (London, England : 1993). PMID 26190576 DOI: 10.1016/J.Str.2015.06.009  0.766
2014 Degen D, Feng Y, Zhang Y, Ebright KY, Ebright YW, Gigliotti M, Vahedian-Movahed H, Mandal S, Talaue M, Connell N, Arnold E, Fenical W, Ebright RH. Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife. 3: e02451. PMID 24843001 DOI: 10.7554/Elife.02451  0.772
2014 Zhang Y, Degen D, Ho MX, Sineva E, Ebright KY, Ebright YW, Mekler V, Vahedian-Movahed H, Feng Y, Yin R, Tuske S, Irschik H, Jansen R, Maffioli S, Donadio S, et al. GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides. Elife. 3: e02450. PMID 24755292 DOI: 10.7554/Elife.02450  0.741
2012 Zhang Y, Feng Y, Chatterjee S, Tuske S, Ho MX, Arnold E, Ebright RH. Structural basis of transcription initiation. Science (New York, N.Y.). 338: 1076-80. PMID 23086998 DOI: 10.1126/Science.1227786  0.787
2010 Jiang C, Feng Y, Huang X, Xu Y, Zhang Y, Zhou N, Shen X, Chen K, Jiang H, Liu D. An enzyme-linked immunosorbent assay to compare the affinity of chemical compounds for β-amyloid peptide as a monomer. Analytical and Bioanalytical Chemistry. 396: 1745-1754. PMID 20135308 DOI: 10.1007/S00216-009-3420-6  0.328
2010 Chen L, Feng Y, Zhou Y, Zhu W, Shen X, Chen K, Jiang H, Liu D. Dual role of Zn2+ in maintaining structural integrity and suppressing deacetylase activity of SIRT1. Journal of Inorganic Biochemistry. 104: 180-185. PMID 19923004 DOI: 10.1016/J.Jinorgbio.2009.10.021  0.34
2009 Feng Y, Zhang L, Hu T, Shen X, Ding J, Chen K, Jiang H, Liu D. A conserved hydrophobic core at Bcl-xL mediates its structural stability and binding affinity with BH3-domain peptide of pro-apoptotic protein. Archives of Biochemistry and Biophysics. 484: 46-54. PMID 19161970 DOI: 10.1016/J.Abb.2009.01.003  0.321
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