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Ferdinand Marletaz, Ph.D. - Publications

Affiliations: 
2006-2010 Centre d'Océanologie de Marseille Université de Marseille 
 2011-2016 Zoology University of Oxford, Oxford, United Kingdom 
 2016-2019 Molecular Genetics Unit Okinawa Institute of Science & Technology 
 2020- Genetic, Evolution, Environment University College London, London, United Kingdom 
Area:
Evolution, zoology, phylogeny
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Piovani L, Marlétaz F. Single-cell transcriptomics refuels the exploration of spiralian biology. Briefings in Functional Genomics. PMID 37609674 DOI: 10.1093/bfgp/elad038  0.773
2023 Piovani L, Leite DJ, Yañez Guerra LA, Simpson F, Musser JM, Salvador-Martínez I, Marlétaz F, Jékely G, Telford MJ. Single-cell atlases of two lophotrochozoan larvae highlight their complex evolutionary histories. Science Advances. 9: eadg6034. PMID 37531419 DOI: 10.1126/sciadv.adg6034  0.756
2023 Ahuja N, Hwaun E, Pungor JR, Rafiq R, Nemes S, Sakmar T, Vogt MA, Grasse B, Diaz Quiroz J, Montague TG, Null RW, Dallis DN, Gavriouchkina D, Marletaz F, Abbo L, et al. Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity. Current Biology : Cb. PMID 37343558 DOI: 10.1016/j.cub.2023.05.066  0.8
2023 Marlétaz F, Timoshevskaya N, Timoshevskiy V, Simakov O, Parey E, Gavriouchkina D, Suzuki M, Kubokawa K, Brenner S, Smith J, Rokhsar DS. The hagfish genome and the evolution of vertebrates. Biorxiv : the Preprint Server For Biology. PMID 37131617 DOI: 10.1101/2023.04.17.537254  0.833
2023 Marlétaz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, et al. Analysis of the sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes. Cell Genomics. 3: 100295. PMID 37082140 DOI: 10.1016/j.xgen.2023.100295  0.825
2023 Marlétaz F, de la Calle-Mustienes E, Acemel RD, Paliou C, Naranjo S, Martínez-García PM, Cases I, Sleight VA, Hirschberger C, Marcet-Houben M, Navon D, Andrescavage A, Skvortsova K, Duckett PE, González-Rajal Á, et al. The little skate genome and the evolutionary emergence of wing-like fins. Nature. PMID 37046085 DOI: 10.1038/s41586-023-05868-1  0.714
2023 Martín-Zamora FM, Liang Y, Guynes K, Carrillo-Baltodano AM, Davies BE, Donnellan RD, Tan Y, Moggioli G, Seudre O, Tran M, Mortimer K, Luscombe NM, Hejnol A, Marlétaz F, Martín-Durán JM. Annelid functional genomics reveal the origins of bilaterian life cycles. Nature. PMID 36697830 DOI: 10.1038/s41586-022-05636-7  0.449
2022 Pisani D, Rossi ME, Marlétaz F, Feuda R. Phylogenomics: Is less more when using large-scale datasets? Current Biology : Cb. 32: R1340-R1342. PMID 36538883 DOI: 10.1016/j.cub.2022.11.019  0.751
2022 Brasó-Vives M, Marlétaz F, Echchiki A, Mantica F, Acemel RD, Gómez-Skarmeta JL, Hartasánchez DA, Le Targa L, Pontarotti P, Tena JJ, Maeso I, Escriva H, Irimia M, Robinson-Rechavi M. Parallel evolution of amphioxus and vertebrate small-scale gene duplications. Genome Biology. 23: 243. PMID 36401278 DOI: 10.1186/s13059-022-02808-6  0.59
2022 Gavriouchkina D, Marlétaz F, Miryeganeh M, Saze H. Corrigendum. The New Phytologist. PMID 35383924 DOI: 10.1111/nph.18106  0.729
2022 Simakov O, Bredeson J, Berkoff K, Marletaz F, Mitros T, Schultz DT, O'Connell BL, Dear P, Martinez DE, Steele RE, Green RE, David CN, Rokhsar DS. Deeply conserved synteny and the evolution of metazoan chromosomes. Science Advances. 8: eabi5884. PMID 35108053 DOI: 10.1126/sciadv.abi5884  0.614
2021 Miryeganeh M, Marlétaz F, Gavriouchkina D, Saze H. De novo genome assembly and in natura epigenomics reveal salinity-induced DNA methylation in the mangrove tree Bruguiera gymnorhiza. The New Phytologist. PMID 34532854 DOI: 10.1111/nph.17738  0.81
2021 Finet C, Kassner VA, Carvalho AB, Chung H, Day JP, Day S, Delaney EK, De Ré FC, Dufour HD, Dupim E, Izumitani HF, Gautério TB, Justen J, Katoh T, Kopp A, et al. DrosoPhyla: resources for Drosophilid Phylogeny and Systematics. Genome Biology and Evolution. PMID 34343293 DOI: 10.1093/gbe/evab179  0.439
2021 Sanchez G, Fernández-Álvarez FÁ, Taite M, Sugimoto C, Jolly J, Simakov O, Marlétaz F, Allcock L, Rokhsar DS. Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida). Communications Biology. 4: 819. PMID 34188187 DOI: 10.1038/s42003-021-02348-y  0.653
2021 Xu F, Marlétaz F, Gavriouchkina D, Liu X, Sauka-Spengler T, Zhang G, Holland PWH. Evidence from oyster suggests an ancient role for Pdx in regulating insulin gene expression in animals. Nature Communications. 12: 3117. PMID 34035261 DOI: 10.1038/s41467-021-23216-7  0.784
2020 Martín-Durán JM, Vellutini BC, Marlétaz F, Cetrangolo V, Cvetesic N, Thiel D, Henriet S, Grau-Bové X, Carrillo-Baltodano AM, Gu W, Kerbl A, Marquez Y, Bekkouche N, Chourrout D, Gómez-Skarmeta JL, et al. Conservative route to genome compaction in a miniature annelid. Nature Ecology & Evolution. PMID 33199869 DOI: 10.1038/s41559-020-01327-6  0.531
2020 Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, et al. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications. 11: 2631. PMID 32457347 DOI: 10.1038/S41467-020-16284-8  0.816
2020 Simakov O, Marlétaz F, Yue JX, O'Connell B, Jenkins J, Brandt A, Calef R, Tung CH, Huang TK, Schmutz J, Satoh N, Yu JK, Putnam NH, Green RE, Rokhsar DS. Deeply conserved synteny resolves early events in vertebrate evolution. Nature Ecology & Evolution. PMID 32313176 DOI: 10.1038/S41559-020-1156-Z  0.791
2020 Choo LQ, Bal TMP, Choquet M, Smolina I, Ramos-Silva P, Marlétaz F, Kopp M, Hoarau G, Peijnenburg KTCA. Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance. Bmc Genomics. 21: 11. PMID 31900119 DOI: 10.1186/S12864-019-6372-Z  0.465
2020 Martín-Durán JM, Marlétaz F. Unravelling spiral cleavage. Development (Cambridge, England). 147. PMID 31898583 DOI: 10.1242/Dev.181081  0.396
2019 Sanchez G, Jolly J, Reid A, Sugimoto C, Azama C, Marlétaz F, Simakov O, Rokhsar DS. New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis. Communications Biology. 2: 465. PMID 31840110 DOI: 10.1038/s42003-019-0661-6  0.539
2019 Marlétaz F. Zoology: Worming into the Origin of Bilaterians. Current Biology : Cb. 29: R577-R579. PMID 31211978 DOI: 10.1016/J.Cub.2019.05.006  0.332
2019 Marlétaz F, Peijnenburg KTCA, Goto T, Satoh N, Rokhsar DS. A New Spiralian Phylogeny Places the Enigmatic Arrow Worms among Gnathiferans. Current Biology : Cb. 29: 312-318.e3. PMID 30639106 DOI: 10.1016/J.Cub.2018.11.042  0.626
2018 Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6  0.754
2017 Marlétaz F, Le Parco Y, Liu S, Peijnenburg KTCA. Extreme Mitogenomic Variation in Natural Populations of Chaetognaths. Genome Biology and Evolution. 9: 1374-1384. PMID 28854623 DOI: 10.1093/Gbe/Evx090  0.344
2017 Hargreaves AD, Zhou L, Christensen J, Marlétaz F, Liu S, Li F, Jansen PG, Spiga E, Hansen MT, Pedersen SVH, Biswas S, Serikawa K, Fox BA, Taylor WR, Mulley JF, et al. Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster. Proceedings of the National Academy of Sciences of the United States of America. PMID 28674003 DOI: 10.1073/Pnas.1702930114  0.758
2017 Burridge AK, Hörnlein C, Janssen AW, Hughes M, Bush SL, Marlétaz F, Gasca R, Pierrot-Bults AC, Michel E, Todd JA, Young JR, Osborn KJ, Menken SBJ, Peijnenburg KTCA. Time-calibrated molecular phylogeny of pteropods. Plos One. 12: e0177325. PMID 28604805 DOI: 10.1371/Journal.Pone.0177325  0.38
2017 Holland PW, Marlétaz F, Maeso I, Dunwell TL, Paps J. New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994121 DOI: 10.1098/Rstb.2015.0480  0.82
2016 Maeso I, Dunwell TL, Wyatt CD, Marlétaz F, Vető B, Bernal JA, Quah S, Irimia M, Holland PW. Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals. Bmc Biology. 14: 45. PMID 27296695 DOI: 10.1186/S12915-016-0267-0  0.717
2016 Feuda R, Marletaz F, Bentley MA, Holland PW. Conservation, duplication and divergence of five opsin genes in insect evolution. Genome Biology and Evolution. PMID 26865071 DOI: 10.1093/Gbe/Evw015  0.79
2016 Acemel RD, Tena JJ, Irastorza-Azcarate I, Marlétaz F, Gómez-Marín C, de la Calle-Mustienes E, Bertrand S, Diaz SG, Aldea D, Aury JM, Mangenot S, Holland PW, Devos DP, Maeso I, Escrivá H, et al. A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation. Nature Genetics. PMID 26829752 DOI: 10.1038/Ng.3497  0.622
2015 Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, et al. Hemichordate genomes and deuterostome origins. Nature. PMID 26580012 DOI: 10.1038/Nature16150  0.827
2015 Kenny NJ, Namigai EK, Marlétaz F, Hui JH, Shimeld SM. Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida). Marine Genomics. PMID 26319627 DOI: 10.1016/J.Margen.2015.07.004  0.346
2015 Marlétaz F, Maeso I, Faas L, Isaacs HV, Holland PW. Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution. Bmc Biology. 13: 56. PMID 26231746 DOI: 10.1186/S12915-015-0165-X  0.728
2014 Ferguson L, Marlétaz F, Carter JM, Taylor WR, Gibbs M, Breuker CJ, Holland PW. Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extra-embryonic tissue formation. Plos Genetics. 10: e1004698. PMID 25340822 DOI: 10.1371/Journal.Pgen.1004698  0.712
2014 Marlétaz F, Paps J, Maeso I, Holland PW. Discovery and classification of homeobox genes in animal genomes. Methods in Molecular Biology (Clifton, N.J.). 1196: 3-18. PMID 25151154 DOI: 10.1007/978-1-4939-1242-1_1  0.812
2013 Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, et al. Insights into bilaterian evolution from three spiralian genomes. Nature. 493: 526-31. PMID 23254933 DOI: 10.1038/Nature11696  0.834
2013 Finet C, Berne-Dedieu A, Scutt CP, Marlétaz F. Evolution of the ARF gene family in land plants: old domains, new tricks. Molecular Biology and Evolution. 30: 45-56. PMID 22977118 DOI: 10.1093/Molbev/Mss220  0.412
2010 Finet C, Timme RE, Delwiche CF, Marlétaz F. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Current Biology : Cb. 20: 2217-22. PMID 21145743 DOI: 10.1016/J.Cub.2010.11.035  0.34
2010 Marlétaz F, Gyapay G, Le Parco Y. High level of structural polymorphism driven by mobile elements in the Hox genomic region of the Chaetognath Spadella cephaloptera. Genome Biology and Evolution. 2: 665-77. PMID 20829282 DOI: 10.1093/Gbe/Evq047  0.434
2008 Campo-Paysaa F, Marlétaz F, Laudet V, Schubert M. Retinoic acid signaling in development: tissue-specific functions and evolutionary origins. Genesis (New York, N.Y. : 2000). 46: 640-56. PMID 19003929 DOI: 10.1002/Dvg.20444  0.357
2008 Marlétaz F, Le Parco Y. Careful with understudied phyla: the case of chaetognath. Bmc Evolutionary Biology. 8: 251. PMID 18798978 DOI: 10.1186/1471-2148-8-251  0.446
2008 Marlétaz F, Gilles A, Caubit X, Perez Y, Dossat C, Samain S, Gyapay G, Wincker P, Le Parco Y. Chaetognath transcriptome reveals ancestral and unique features among bilaterians. Genome Biology. 9: R94. PMID 18533022 DOI: 10.1186/Gb-2008-9-6-R94  0.431
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