Jiaming Qi - Related publications

Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Chemical Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zinani OQH, Keseroğlu K, Özbudak EM. Regulatory mechanisms ensuring coordinated expression of functionally related genes. Trends in Genetics : Tig. PMID 34376301 DOI: 10.1016/j.tig.2021.07.008   
2021 Song N, Cheng Y, Peng W, Peng E, Zhao Z, Liu T, Yi T, Dai L, Wang B, Hong Y. Genome-Wide Characterization and Expression Analysis of the Gene Family in Sweet Orange (). International Journal of Molecular Sciences. 22. PMID 34445624 DOI: 10.3390/ijms22168918   
2021 Ramos ML, Park D, Lim J, Park J, Tran K, Garcia EJ, Green E. Adaptive local false discovery rate procedures for highly spiky data and their application RNA sequencing data of yeast SET4 deletion mutants. Biometrical Journal. Biometrische Zeitschrift. PMID 34320248 DOI: 10.1002/bimj.202000256   
2021 Ramos ML, Park D, Lim J, Park J, Tran K, Garcia EJ, Green E. Adaptive local false discovery rate procedures for highly spiky data and their application RNA sequencing data of yeast SET4 deletion mutants. Biometrical Journal. Biometrische Zeitschrift. PMID 34320248 DOI: 10.1002/bimj.202000256   
2021 Pratt IS, Zhang B. Genome-Wide Identification of ARF Transcription Factor Gene Family and Their Expression Analysis in Sweet Potato. International Journal of Molecular Sciences. 22. PMID 34502298 DOI: 10.3390/ijms22179391   
2021 Zhang X, Liu G, Zhang N, Hua K. A time-resolved transcriptome landscape of the developing mouse ovary. Biochemical and Biophysical Research Communications. 572: 57-64. PMID 34343835 DOI: 10.1016/j.bbrc.2021.07.083   
2021 Wang P, Wang D. Gene differential co-expression networks based on RNA-seq: construction and its applications. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34383649 DOI: 10.1109/TCBB.2021.3103280   
2021 Peng Y, Peng C, Fang Z, Chen G. Bioinformatics Analysis Identifies Molecular Markers Regulating Development and Progression of Endometriosis and Potential Therapeutic Drugs. Frontiers in Genetics. 12: 622683. PMID 34421979 DOI: 10.3389/fgene.2021.622683   
2021 Liu Y, Cui S, Sun J, Yan X, Han D. Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets. Frontiers in Genetics. 12: 722803. PMID 34512732 DOI: 10.3389/fgene.2021.722803   
2021 Aviña-Padilla K, Ramírez-Rafael JA, Herrera-Oropeza GE, Muley VY, Valdivia DI, Díaz-Valenzuela E, García-García A, Varela-Echavarría A, Hernández-Rosales M. Evolutionary Perspective and Expression Analysis of Intronless Genes Highlight the Conservation of Their Regulatory Role. Frontiers in Genetics. 12: 654256. PMID 34306008 DOI: 10.3389/fgene.2021.654256   
2021 Hajirnis N, Mishra RK. Homeotic Genes: Clustering, Modularity, and Diversity. Frontiers in Cell and Developmental Biology. 9: 718308. PMID 34458272 DOI: 10.3389/fcell.2021.718308   
2021 Zaynab M, Hussain A, Sharif Y, Fatima M, Sajid M, Rehman N, Yang X, Khan KA, Ghramh HA, Li S. Mitogen-Activated Protein Kinase Expression Profiling Revealed Its Role in Regulating Stress Responses in Potato (). Plants (Basel, Switzerland). 10. PMID 34371574 DOI: 10.3390/plants10071371   
2021 Gu H, Li L, Du M, Xu H, Gao M, Liu X, Wei X, Zhong X. Key Gene and Functional Pathways Identified in Unexplained Recurrent Spontaneous Abortion Using Targeted RNA Sequencing and Clinical Analysis. Frontiers in Immunology. 12: 717832. PMID 34421922 DOI: 10.3389/fimmu.2021.717832   
2021 Singh AN, Sharma N. In-silico identification of frequently mutated genes and their co-enriched metabolic pathways associated with Prostate cancer progression. Andrologia. e14236. PMID 34468989 DOI: 10.1111/and.14236   
2021 Da Rocha M, Bournaud C, Dazenière J, Thorpe P, Bailly-Bechet M, Pellegrin C, Péré A, Grynberg P, Perfus-Barbeoch L, Eves-van den Akker S, Danchin EGJ. Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode and a Promoter Motif Associated with Effector Genes. Genes. 12. PMID 34070210 DOI: 10.3390/genes12050771   
2021 Yu X, Ali MM, Li B, Fang T, Chen F. Transcriptome data-based identification of candidate genes involved in metabolism and accumulation of soluble sugars during fruit development in 'Huangguan' plum. Journal of Food Biochemistry. e13878. PMID 34337770 DOI: 10.1111/jfbc.13878   
2021 Dou Z, Ma X. Inferring Functional Epigenetic Modules by Integrative Analysis of Multiple Heterogeneous Networks. Frontiers in Genetics. 12: 706952. PMID 34504516 DOI: 10.3389/fgene.2021.706952   
2021 Chun KH. Discovery of Cellular RhoA Functions by the Integrated Application of Gene Set Enrichment Analysis. Biomolecules & Therapeutics. PMID 34429388 DOI: 10.4062/biomolther.2021.075   
2021 Meng F, Du N, Xu D, Kuai L, Liu L, Xiu M. Bioinformatics Analysis of the Molecular Mechanism and Potential Treatment Target of Ankylosing Spondylitis. Computational and Mathematical Methods in Medicine. 2021: 7471291. PMID 34335866 DOI: 10.1155/2021/7471291   
2021 Zhang M, Dai R, Zhao Q, Zhou L, An Y, Tang X, Zhao X. Identification of Key Biomarkers and Immune Infiltration in Systemic Juvenile Idiopathic Arthritis by Integrated Bioinformatic Analysis. Frontiers in Molecular Biosciences. 8: 681526. PMID 34336925 DOI: 10.3389/fmolb.2021.681526   
2021 Wang X, Fu Y, Wang M, Niu G. Synthetic Cellobiose-Inducible Regulatory Systems Allow Tight and Dynamic Controls of Gene Expression in . Acs Synthetic Biology. PMID 34347449 DOI: 10.1021/acssynbio.1c00152   
2021 Thomas AL, Marsman J, Antony J, Schierding W, O'Sullivan JM, Horsfield JA. Transcriptional Regulation of : An Informatics Analysis. Genes. 12. PMID 34440349 DOI: 10.3390/genes12081175   
2021 Zhang S, Li D, Zhang X, Sun Y, Xu S, Wang X, Zhang N, Wang M, Tian H, Li C. Global transcriptomic analysis of subsp ATCC11842 reveals the role of in the post-acidification of yogurt. Food & Function. PMID 34387638 DOI: 10.1039/d1fo01357b   
2021 Sun S, Roedelsperger C, Sommer RJ. Single worm transcriptomics identifies a developmental core network of oscillating genes with deep conservation across nematodes. Genome Research. PMID 34301622 DOI: 10.1101/gr.275303.121   
2021 Sheng J, Li WV. Selecting gene features for unsupervised analysis of single-cell gene expression data. Briefings in Bioinformatics. PMID 34351383 DOI: 10.1093/bib/bbab295   
2021 Xie X, Wang EC, Xu D, Shu X, Zhao YF, Guo D, Fu W, Wang L. Bioinformatics Analysis Reveals the Potential Diagnostic Biomarkers for Abdominal Aortic Aneurysm. Frontiers in Cardiovascular Medicine. 8: 656263. PMID 34355024 DOI: 10.3389/fcvm.2021.656263   
2021 Linggi B, Jairath V, Zou G, Shackelton LM, McGovern DPB, Salas A, Verstockt B, Silverberg MS, Nayeri S, Feagan BG, Vande Casteele N. Meta-analysis of gene expression disease signatures in colonic biopsy tissue from patients with ulcerative colitis. Scientific Reports. 11: 18243. PMID 34521888 DOI: 10.1038/s41598-021-97366-5   
2021 Li W, Huang L, Liu N, Pandey MK, Chen Y, Cheng L, Guo J, Yu B, Luo H, Zhou X, Huai D, Chen W, Yan L, Wang X, Lei Y, et al. Key Regulators of Sucrose Metabolism Identified through Comprehensive Comparative Transcriptome Analysis in Peanuts. International Journal of Molecular Sciences. 22. PMID 34298903 DOI: 10.3390/ijms22147266   
2021 Li W, Huang L, Liu N, Pandey MK, Chen Y, Cheng L, Guo J, Yu B, Luo H, Zhou X, Huai D, Chen W, Yan L, Wang X, Lei Y, et al. Key Regulators of Sucrose Metabolism Identified through Comprehensive Comparative Transcriptome Analysis in Peanuts. International Journal of Molecular Sciences. 22. PMID 34298903 DOI: 10.3390/ijms22147266   
2021 Ren L, Wu H, Zhang T, Ge X, Wang T, Zhou W, Zhang L, Ma D, Wang A. Genome-Wide Identification of Transcription Factors Family in Sweet Potato Reveals Significant Roles of miR319-Targeted TCPs in Leaf Anatomical Morphology. Frontiers in Plant Science. 12: 686698. PMID 34426735 DOI: 10.3389/fpls.2021.686698   
2021 Lü BB, Wu GG, Sun Y, Zhang LS, Wu X, Jiang W, Li P, Huang YN, Wang JB, Zhao YC, Liu H, Song LL, Mo Q, Pan AH, Yang Y, et al. Comparative Transcriptome and Endophytic Bacterial Community Analysis of SH. Frontiers in Microbiology. 12: 682356. PMID 34354681 DOI: 10.3389/fmicb.2021.682356   
2021 Sant DW, Sinclair M, Mungall CJ, Schulz S, Zerbino D, Lovering RC, Logie C, Eilbeck K. Sequence ontology terminology for gene regulation. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194745. PMID 34389511 DOI: 10.1016/j.bbagrm.2021.194745   
2021 Chey M, Jose AM. Heritable epigenetic changes at single genes: challenges and opportunities in Caenorhabditis elegans. Trends in Genetics : Tig. PMID 34493403 DOI: 10.1016/j.tig.2021.08.011   
2021 Jiao Y, Xie R, Zhang H. Identification of potential pathways associated with indole-3-butyric acid in citrus bud germination via transcriptomic analysis. Functional & Integrative Genomics. PMID 34476672 DOI: 10.1007/s10142-021-00802-y   
2021 Li P, Zheng T, Zhang Z, Liu W, Qiu L, Wang J, Cheng T, Zhang Q. Integrative Identification of Crucial Genes Associated With Plant Hormone-Mediated Bud Dormancy in . Frontiers in Genetics. 12: 698598. PMID 34295354 DOI: 10.3389/fgene.2021.698598   
2021 Gandhi S, Li Y, Tang W, Christensen JB, Urrutia HA, Vieceli FM, Piacentino ML, Bronner ME. A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos. Development (Cambridge, England). 148. PMID 34437692 DOI: 10.1242/dev.193565   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Chen G, Yu M, Cao J, Zhao H, Dai Y, Cong Y, Qiao G. Identification of candidate biomarkers correlated with poor prognosis of breast cancer based on bioinformatics analysis. Bioengineered. 12: 5149-5161. PMID 34384030 DOI: 10.1080/21655979.2021.1960775   
2021 Krzysztoń R, Wan Y, Petreczky J, Balázsi G. Gene-circuit therapy on the horizon: synthetic biology tools for engineered therapeutics. Acta Biochimica Polonica. PMID 34460209 DOI: 10.18388/abp.2020_5744   
2021 Chai S, Guo S, Yang J, Lu S, Yue Y, Li H, Sun P, Zhang T, Xu B, Sun H, Si S, Zhou J, Yang J, Yang H, Li Z, et al. Inflammation is involved in response of gastric mucosal epithelial cells under simulated microgravity by integrated transcriptomic analysis. American Journal of Translational Research. 13: 9195-9207. PMID 34540035   
2021 Liu J, He Z, Li S, Huang W, Ren Z. Network Pharmacology-Based Analysis of the Effects of (Thunb.) Pers. in Non-Small Cell Lung Cancer. Evidence-Based Complementary and Alternative Medicine : Ecam. 2021: 4341517. PMID 34497656 DOI: 10.1155/2021/4341517   
2021 Nisar M, Paracha RZ, Arshad I, Adil S, Zeb S, Hanif R, Rafiq M, Hussain Z. Integrated Analysis of Microarray and RNA-Seq Data for the Identification of Hub Genes and Networks Involved in the Pancreatic Cancer. Frontiers in Genetics. 12: 663787. PMID 34262595 DOI: 10.3389/fgene.2021.663787   
2021 Wang P, Wang B, Zhang Z, Wang Z. Identification of inflammation-related DNA methylation biomarkers in periodontitis patients based on weighted co-expression analysis. Aging. 13. PMID 34347624 DOI: 10.18632/aging.203378   
2021 Alhag A, Song J, Dahro B, Wu H, Khan M, Salih H, Liu JH. Genome-wide identification and expression analysis of Polyamine Uptake Transporter gene family in sweet orange (Citrus sinensis). Plant Biology (Stuttgart, Germany). PMID 34374185 DOI: 10.1111/plb.13302   
2021 Zhao YP, Shen JL, Li WJ, Wu N, Chen C, Hou YX. Evolutionary and Characteristic Analysis of RING-DUF1117 E3 Ubiquitin Ligase Genes in Discerning the Role of GhRDUF4D in Resistance. Biomolecules. 11. PMID 34439811 DOI: 10.3390/biom11081145   
2021 Qian C, Jing Y, Xia M, Ye Q. Comprehensive analysis of dysregulated genes associated with atherosclerotic plaque destabilization. Experimental Biology and Medicine (Maywood, N.J.). 15353702211033247. PMID 34308657 DOI: 10.1177/15353702211033247   
2021 Zhu Z, Gregg K, Zhou W. iRGvalid: A Robust Method for Optimal Reference Gene Validation. Frontiers in Genetics. 12: 716653. PMID 34422018 DOI: 10.3389/fgene.2021.716653   
2021 Singh P, Rai A, Verma AK, Alsahli MA, Rahmani AH, Almatroodi SA, Alrumaihi F, Dev K, Sinha A, Sankhwar S, Dohare R. Survival-Based Biomarker Module Identification Associated with Oral Squamous Cell Carcinoma (OSCC). Biology. 10. PMID 34439992 DOI: 10.3390/biology10080760   
2021 Liang Y, Wang M, Liu Y, Wang C, Takahashi K, Naruse K. Meta-Analysis-Assisted Detection of Gravity-Sensitive Genes in Human Vascular Endothelial Cells. Frontiers in Cell and Developmental Biology. 9: 689662. PMID 34422812 DOI: 10.3389/fcell.2021.689662   
2021 Farr EB, Sattler JM, Frischknecht F. SPOT: a web-tool enabling swift profiling of transcriptomes. Bioinformatics (Oxford, England). PMID 34289024 DOI: 10.1093/bioinformatics/btab541