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Aleem Syed - Publications

Affiliations: 
2016 Iowa State University, Ames, IA, United States 
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Filandr F, Sarpe V, Raval S, Crowder DA, Khan MF, Douglas P, Coales S, Viner R, Syed A, Tainer JA, Lees-Miller SP, Schriemer DC. Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology. Nature Communications. 15: 2200. PMID 38467655 DOI: 10.1038/s41467-024-46610-3  0.36
2023 Swift ML, Zhou R, Syed A, Moreau LA, Tomasik B, Tainer JA, Konstantinopoulos PA, D'Andrea AD, He YJ, Chowdhury D. Dynamics of the DYNLL1-MRE11 complex regulate DNA end resection and recruitment of Shieldin to DSBs. Nature Structural & Molecular Biology. PMID 37696958 DOI: 10.1038/s41594-023-01074-9  0.406
2023 Syed A, Filandr F, Patterson-Fortin J, Bacolla A, Ravindranathan R, Zhou J, McDonald DT, Albuhluli ME, Verway-Cohen A, Newman JA, Tsai MS, Jones DE, Schriemer DC, D'Andrea AD, Tainer JA. Novobiocin blocks nucleic acid binding to Polθ and inhibits stimulation of its ATPase activity. Nucleic Acids Research. PMID 37665033 DOI: 10.1093/nar/gkad727  0.397
2023 Zhou R, Swift ML, Syed A, Huang K, Moreau L, Tainer JA, Konstantinopoulos PA, Dâ Andrea AD, He YJ, Chowdhury D. Dynamics of the DYNLL1/MRE11 complex regulates DNA end resection and recruitment of the Shieldin complex to DSBs. Biorxiv : the Preprint Server For Biology. PMID 37034578 DOI: 10.1101/2023.03.27.534416  0.408
2022 Chinnam NB, Syed A, Hura GL, Hammel M, Tainer JA, Tsutakawa SE. Combining small angle X-ray scattering (SAXS) with protein structure predictions to characterize conformations in solution. Methods in Enzymology. 678: 351-376. PMID 36641214 DOI: 10.1016/bs.mie.2022.09.023  0.63
2022 Rosenberg DJ, Syed A, Tainer JA, Hura GL. Monitoring Nuclease Activity by X-Ray Scattering Interferometry Using Gold Nanoparticle-Conjugated DNA. Methods in Molecular Biology (Clifton, N.J.). 2444: 183-205. PMID 35290639 DOI: 10.1007/978-1-0716-2063-2_12  0.404
2022 Chinnam NB, Syed A, Burnett KH, Hura GL, Tainer JA, Tsutakawa SE. Universally Accessible Structural Data on Macromolecular Conformation, Assembly, and Dynamics by Small Angle X-Ray Scattering for DNA Repair Insights. Methods in Molecular Biology (Clifton, N.J.). 2444: 43-68. PMID 35290631 DOI: 10.1007/978-1-0716-2063-2_4  0.642
2021 Ye Z, Xu S, Shi Y, Bacolla A, Syed A, Moiani D, Tsai CL, Shen Q, Peng G, Leonard PG, Jones DE, Wang B, Tainer JA, Ahmed Z. GRB2 enforces homology-directed repair initiation by MRE11. Science Advances. 7. PMID 34348893 DOI: 10.1126/sciadv.abe9254  0.389
2021 Zhou J, Gelot C, Pantelidou C, Li A, Yücel H, Davis RE, Farkkila A, Kochupurakkal B, Syed A, Shapiro GI, Tainer JA, Blagg BSJ, Ceccaldi R, D'Andrea AD. A first-in-class Polymerase Theta Inhibitor selectively targets Homologous-Recombination-Deficient Tumors. Nature Cancer. 2: 598-610. PMID 34179826 DOI: 10.1038/s43018-021-00203-x  0.374
2019 Syed A, Tainer JA. Charge Transport Communication through DNA by Protein Fe-S Clusters: How Far Is Not Too Far? Acs Central Science. 5: 7-9. PMID 30693320 DOI: 10.1021/Acscentsci.8B00909  0.449
2018 Peterson JA, Wijesooriya C, Gehrmann EJ, Mahoney KM, Goswami PP, Albright TR, Syed A, Dutton AS, Smith EA, Winter AH. A Family of BODIPY Photocages Cleaved by Single Photons of Visible/Near-IR Light. Journal of the American Chemical Society. PMID 29775298 DOI: 10.1021/Jacs.8B04040  0.487
2018 Syed A, Tainer JA. The MRE11-RAD50-NBS1 Complex Conducts the Orchestration of Damage Signaling and Outcomes to Stress in DNA Replication and Repair. Annual Review of Biochemistry. PMID 29709199 DOI: 10.1146/Annurev-Biochem-062917-012415  0.47
2018 Moiani D, Ronato DA, Brosey CA, Arvai AS, Syed A, Masson JY, Petricci E, Tainer JA. Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities. Methods in Enzymology. 601: 205-241. PMID 29523233 DOI: 10.1016/Bs.Mie.2017.11.030  0.457
2017 Syed A, Zhu Q, Smith EA. Lateral diffusion and signaling of receptor for advanced glycation end-products (RAGE): a receptor involved in chronic inflammation. European Biophysics Journal : Ebj. PMID 28623388 DOI: 10.1007/S00249-017-1227-5  0.772
2017 Syed A, Smith EA. Raman Imaging in Cell Membranes, Lipid-Rich Organelles, and Lipid Bilayers. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 28301746 DOI: 10.1146/Annurev-Anchem-061516-045317  0.511
2016 Syed A, Arora N, Bunch TA, Smith EA. The role of a conserved membrane proximal cysteine in altering αPS2CβPS integrin diffusion. Physical Biology. 13: 066005. PMID 27848929 DOI: 10.1088/1478-3975/13/6/066005  0.722
2016 Syed A, Zhu Q, Smith EA. Ligand Binding Affinity and Changes in the Lateral Diffusion of Receptor for Advanced Glycation Endproducts (RAGE). Biochimica Et Biophysica Acta. PMID 27720951 DOI: 10.1016/J.Bbamem.2016.10.001  0.766
2015 Goswami PP, Syed A, Beck CL, Albright TR, Mahoney KM, Unash R, Smith EA, Winter AH. BODIPY-derived photoremovable protecting groups unmasked with green light. Journal of the American Chemical Society. 137: 3783-6. PMID 25751156 DOI: 10.1021/Jacs.5B01297  0.477
2014 Mahoney KM, Goswami PP, Syed A, Kolker P, Shannan B, Smith EA, Winter AH. Self-immolative phthalate esters sensitive to hydrogen peroxide and light. The Journal of Organic Chemistry. 79: 11740-3. PMID 25384091 DOI: 10.1021/Jo501900H  0.488
2014 Mainali D, Syed A, Arora N, Smith EA. Role of insulin receptor and insulin signaling on αPS2CβPS integrins' lateral diffusion. European Biophysics Journal : Ebj. 43: 603-11. PMID 25331198 DOI: 10.1007/S00249-014-0990-9  0.703
2014 Arora N, Syed A, Sander S, Smith EA. Single particle tracking with sterol modulation reveals the cholesterol-mediated diffusion properties of integrin receptors. Physical Biology. 11: 066001. PMID 25289754 DOI: 10.1088/1478-3975/11/6/066001  0.732
2014 Syed A, Lesoine MD, Bhattacharjee U, Petrich JW, Smith EA. The number of accumulated photons and the quality of stimulated emission depletion lifetime images. Photochemistry and Photobiology. 90: 767-72. PMID 24506181 DOI: 10.1111/Php.12248  0.692
2013 Smith EA, Arora N, Mainali D, Syed A. Extracellular, Membrane and Intracellular Proteins that Alter Integrin Cell Membrane Diffusion and Clustering Biophysical Journal. 104: 252a. DOI: 10.1016/J.Bpj.2012.11.1416  0.729
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