Manfred Auer - Publications

Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Lab, UC Berkeley 

111 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhu S, Choudhury NR, Rooney S, Pham NT, Koszela J, Kelly D, Spanos C, Rappsilber J, Auer M, Michlewski G. RNA pull-down confocal nanoscanning (RP-CONA) detects quercetin as pri-miR-7/HuR interaction inhibitor that decreases α-synuclein levels. Nucleic Acids Research. PMID 34107032 DOI: 10.1093/nar/gkab484  0.01
2021 Shave S, Chen YK, Pham NT, Auer M. PyBindingCurve, Simulation, and Curve Fitting to Complex Binding Systems at Equilibrium. Journal of Chemical Information and Modeling. PMID 34006095 DOI: 10.1021/acs.jcim.1c00216  0.08
2021 Zhang J, Hou Z, Wang X, Jiang H, Neng L, Zhang Y, Yu Q, Burwood GWS, Song J, Auer M, Fridberger A, Hoa M, Shi X. VEGF-A165 gene therapy ameliorates blood-labyrinth barrier breakdown and hearing loss. Jci Insight. PMID 33690221 DOI: 10.1172/jci.insight.143285  0.01
2021 Weis SN, Souza JMF, Hoppe JB, Firmino M, Auer M, Ataii NN, da Silva LA, Gaelzer MM, Klein CP, Mól AR, de Lima CMR, Souza DO, Salbego CG, Ricart CAO, Fontes W, et al. In-depth quantitative proteomic characterization of organotypic hippocampal slice culture reveals sex-specific differences in biochemical pathways. Scientific Reports. 11: 2560. PMID 33510253 DOI: 10.1038/s41598-021-82016-7  0.01
2020 Shave S, Pham NT, Śmieja CB, Auer M. Quantitative Microdialysis: Experimental Protocol and Software for Small Molecule Protein Affinity Determination and for Exclusion of Compounds with Poor Physicochemical Properties. Methods and Protocols. 3. PMID 32751503 DOI: 10.3390/mps3030055  0.01
2020 Kovacs J, Song J, Auer M, He J, Hunter W, Wriggers W. Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution. Journal of Chemical Information and Modeling. PMID 32045242 DOI: 10.1021/acs.jcim.9b01111  0.01
2020 Kennedy SA, Jarboui MA, Srihari S, Raso C, Bryan K, Dernayka L, Charitou T, Bernal-Llinares M, Herrera-Montavez C, Krstic A, Matallanas D, Kotlyar M, Jurisica I, Curak J, Wong V, ... ... Auer M, et al. Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS. Nature Communications. 11: 499. PMID 31980649 DOI: 10.1038/S41467-019-14224-9  0.01
2020 Song J, Patterson R, Metlagel Z, Krey JF, Hao S, Wang L, Ng B, Sazzed S, Kovacs J, Wriggers W, He J, Barr-Gillespie PG, Auer M. A cryo-tomography-based volumetric model of the actin core of mouse vestibular hair cell stereocilia lacking plastin 1. Journal of Structural Biology. 107461. PMID 31962158 DOI: 10.1016/J.Jsb.2020.107461  0.01
2019 Triffo WJ, Palsdottir H, Song J, Morgan DG, McDonald KL, Auer M, Raphael RM. 3D Ultrastructure of the Cochlear Outer Hair Cell Lateral Wall Revealed By Electron Tomography. Frontiers in Cellular Neuroscience. 13: 560. PMID 31920560 DOI: 10.3389/Fncel.2019.00560  0.01
2019 Auer M. Ultrastructural cellular signatures: does cellular form follow function? National Science Review. 6: 861-863. PMID 31867129 DOI: 10.1093/nsr/nwz057  0.01
2019 Lee CH, Griffiths S, Digard P, Pham N, Auer M, Haas J, Grey F. Asparagine Deprivation Causes a Reversible Inhibition of Human Cytomegalovirus Acute Virus Replication. Mbio. 10. PMID 31594813 DOI: 10.1128/mBio.01651-19  0.04
2019 Pérez-Pi I, Evans DA, Horrocks MH, Pham NT, Dolt KS, Koszela J, Kunath T, Auer M. ASYN-CONA, a novel bead-based assay for detecting early stage α-synuclein aggregation. Analytical Chemistry. PMID 30964656 DOI: 10.1021/Acs.Analchem.8B03842  0.01
2019 Metlagel Z, Krey JF, Song J, Swift MF, Tivol WJ, Dumont RA, Thai J, Chang A, Seifikar H, Volkmann N, Hanein D, Barr-Gillespie PG, Auer M. Electron cryo-tomography of vestibular hair-cell stereocilia. Journal of Structural Biology. PMID 30822456 DOI: 10.1016/J.Jsb.2019.02.006  0.01
2019 Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas C, Larabell C, Auer M, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant Cell. PMID 30787178 DOI: 10.1105/Tpc.18.00742  0.01
2018 Rojas F, Silvester E, Young J, Milne R, Tettey M, Houston DR, Walkinshaw MD, Pérez-Pi I, Auer M, Denton H, Smith TK, Thompson J, Matthews KR. Oligopeptide Signaling through TbGPR89 Drives Trypanosome Quorum Sensing. Cell. PMID 30503212 DOI: 10.1016/j.cell.2018.10.041  0.01
2018 Koszela J, Pham NT, Evans D, Mann S, Perez-Pi I, Shave S, Ceccarelli DFJ, Sicheri F, Tyers M, Auer M. Real-time tracking of complex ubiquitination cascades using a fluorescent confocal on-bead assay. Bmc Biology. 16: 88. PMID 30097011 DOI: 10.1186/S12915-018-0554-Z  0.01
2018 Shave S, McGuire K, Pham NT, Mole DJ, Webster SP, Auer M. Diclofenac Identified as a Kynurenine 3-Monooxygenase Binder and Inhibitor by Molecular Similarity Techniques. Acs Omega. 3: 2564-2568. PMID 30023839 DOI: 10.1021/acsomega.7b02091  0.01
2018 Hou Z, Wang X, Cai J, Zhang J, Hassan A, Auer M, Shi X. Platelet-Derived Growth Factor Subunit B Signaling Promotes Pericyte Migration in Response to Loud Sound in the Cochlear Stria Vascularis. Journal of the Association For Research in Otolaryngology : Jaro. PMID 29869048 DOI: 10.1007/S10162-018-0670-Z  0.01
2018 Kamennaya NA, Zemla M, Mahoney L, Chen L, Holman E, Holman HY, Auer M, Ajo-Franklin CM, Jansson C. High pCO-induced exopolysaccharide-rich ballasted aggregates of planktonic cyanobacteria could explain Paleoproterozoic carbon burial. Nature Communications. 9: 2116. PMID 29844378 DOI: 10.1038/S41467-018-04588-9  0.01
2018 Liu W, Luo Z, Wang Y, Pham NT, Tuck L, Pérez-Pi I, Liu L, Shen Y, French C, Auer M, Marles-Wright J, Dai J, Cai Y. Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods. Nature Communications. 9: 1936. PMID 29789543 DOI: 10.1038/S41467-018-04254-0  0.04
2018 Sazzed S, Song J, Kovacs JA, Wriggers W, Auer M, He J. Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia. Molecules (Basel, Switzerland). 23. PMID 29641472 DOI: 10.3390/molecules23040882  0.01
2018 Shave S, Mann S, Koszela J, Kerr A, Auer M. PuLSE: Quality control and quantification of peptide sequences explored by phage display libraries. Plos One. 13: e0193332. PMID 29474422 DOI: 10.1371/journal.pone.0193332  0.01
2017 Portal C, Hintersteiner M, Barbeau O, Dodd P, Huggett M, Pérez-Pi I, Evans D, Auer M. Facile Synthesis of a Next Generation Safety-Catch Acid-Labile Linker, SCAL-2, Suitable for Solid-Phase Synthesis, On-Support Display and for Post-Synthesis Tagging. Chemistryselect. 2: 6658-6662. PMID 29104911 DOI: 10.1002/slct.201701519  0.01
2017 Dantoft W, Martínez-Vicente P, Jafali J, Pérez-Martínez L, Martin K, Kotzamanis K, Craigon M, Auer M, Young NT, Walsh P, Marchant A, Angulo A, Forster T, Ghazal P. Genomic Programming of Human Neonatal Dendritic Cells in Congenital Systemic and In Vitro Cytomegalovirus Infection Reveal Plastic and Robust Immune Pathway Biology Responses. Frontiers in Immunology. 8: 1146. PMID 28993767 DOI: 10.3389/fimmu.2017.01146  0.01
2017 Wilson K, Webster SP, Iredale JP, Zheng X, Homer NZM, Pham N, Auer M, Mole DJ. Detecting Drug-Target Binding in Cells using Fluorescence Activated Cell Sorting Coupled with Mass Spectrometry Analysis. Methods and Applications in Fluorescence. PMID 28901950 DOI: 10.1088/2050-6120/aa8c60  0.01
2017 Rojas F, Koszela J, Búa J, Llorente B, Burchmore R, Auer M, Mottram JC, Téllez-Iñón MT. The ubiquitin-conjugating enzyme CDC34 is essential for cytokinesis in contrast to putative subunits of a SCF complex in Trypanosoma brucei. Plos Neglected Tropical Diseases. 11: e0005626. PMID 28609481 DOI: 10.1371/journal.pntd.0005626  0.01
2017 Belsom A, Mudd G, Giese S, Auer M, Rappsilber J. Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry. Analytical Chemistry. 89: 5319-5324. PMID 28430416 DOI: 10.1021/Acs.Analchem.6B04938  0.01
2017 Chakraborty R, Woo H, Dehal P, Walker R, Zemla M, Auer M, Goodwin LA, Kazakov A, Novichkov P, Arkin AP, Hazen TC. Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site. Standards in Genomic Sciences. 12: 23. PMID 28194258 DOI: 10.1186/S40793-017-0233-7  0.01
2016 Kim KH, Brown RC, Daugaard T, Tivol WF, Auer M, Simmons B, Singh S. Strategy for extending the stability of bio-oil derived phenolic oligomer via mild hydrotreatment with ionic liquid stabilized nanoparticles. Chemsuschem. PMID 27992678 DOI: 10.1002/Cssc.201601515  0.01
2016 Jorgens DM, Inman JL, Wojcik M, Robertson C, Palsdottir H, Tsai WT, Huang H, Bruni-Cardoso A, López CS, Bissell MJ, Xu K, Auer M. Deep nuclear invaginations linked to cytoskeletal filaments: Integrated bioimaging of epithelial cells in 3D culture. Journal of Cell Science. PMID 27505896 DOI: 10.1242/Jcs.190967  0.01
2016 Mori H, Bhat R, Bruni-Cardoso A, Chen EI, Jorgens DM, Coutinho K, Louie K, Bowen BB, Inman JL, Tecca V, Lee SJ, Becker-Weimann S, Northen T, Seiki M, Borowsky AD, Auer M, et al. New insight into the role of MMP14 in metabolic balance. Peerj. 4: e2142. PMID 27478693 DOI: 10.7717/Peerj.2142  1
2016 Shamir ER, Coutinho K, Georgess D, Auer M, Ewald AJ. Twist1+ epithelial cells retain adhesive and proliferative capacity throughout dissemination. Biology Open. PMID 27402962 DOI: 10.1242/Bio.019703  0.01
2016 Berleman JE, Zemla M, Remis JP, Liu H, Davis AE, Worth AN, West Z, Zhang A, Park H, Bosneaga E, van Leer B, Tsai W, Zusman DR, Auer M. Exopolysaccharide microchannels direct bacterial motility and organize multicellular behavior. The Isme Journal. PMID 27152937 DOI: 10.1038/Ismej.2016.60  1
2016 Benoit RM, Ostermeier C, Geiser M, Li JS, Widmer H, Auer M. Seamless Insert-Plasmid Assembly at High Efficiency and Low Cost. Plos One. 11: e0153158. PMID 27073895 DOI: 10.1371/journal.pone.0153158  0.01
2016 Heusermann W, Ludin B, Pham NT, Auer M, Weidemann T, Hintersteiner M. A Wide-Field Fluorescence Microscope Extension for Ultrafast Screening of One-Bead One-Compound Libraries Using a Spectral Image Subtraction Approach. Acs Combinatorial Science. 18: 209-19. PMID 27057765 DOI: 10.1021/acscombsci.5b00175  1
2016 Sun L, Singh S, Joo M, Vega-Sanchez M, Ronald P, Simmons BA, Adams P, Auer M. Non-invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy. Biotechnology and Bioengineering. 113: 82-90. PMID 26137889 DOI: 10.1002/Bit.25690  0.01
2015 Mudd G, Pi IP, Fethers N, Dodd PG, Barbeau OR, Auer M. A general synthetic route to isomerically pure functionalized rhodamine dyes. Methods and Applications in Fluorescence. 3: 045002. PMID 29148510 DOI: 10.1088/2050-6120/3/4/045002  0.01
2015 Bhattacharya P, Barnebey A, Zemla M, Goodwin L, Auer M, Yannone SM. Complete genome sequence of the chromate-reducing bacterium Thermoanaerobacter thermohydrosulfuricus strain BSB-33. Standards in Genomic Sciences. 10: 74. PMID 26445627 DOI: 10.1186/s40793-015-0028-7  0.01
2015 Yamashita T, Hakizimana P, Wu S, Hassan A, Jacob S, Temirov J, Fang J, Mellado-Lagarde M, Gursky R, Horner L, Leibiger B, Leijon S, Centonze VE, Berggren PO, Frase S, Auer M, et al. Outer Hair Cell Lateral Wall Structure Constrains the Mobility of Plasma Membrane Proteins. Plos Genetics. 11: e1005500. PMID 26352669 DOI: 10.1371/Journal.Pgen.1005500  1
2015 Koos B, Cane G, Grannas K, Löf L, Arngården L, Heldin J, Clausson CM, Klaesson A, Hirvonen MK, de Oliveira FM, Talibov VO, Pham NT, Auer M, Danielson UH, Haybaeck J, et al. Proximity-dependent initiation of hybridization chain reaction. Nature Communications. 6: 7294. PMID 26065580 DOI: 10.1038/Ncomms8294  0.01
2015 Shave S, Blackburn EA, Adie J, Houston DR, Auer M, Webster SP, Taylor P, Walkinshaw MD. UFSRAT: Ultra-fast Shape Recognition with Atom Types--the discovery of novel bioactive small molecular scaffolds for FKBP12 and 11βHSD1. Plos One. 10: e0116570. PMID 25659145 DOI: 10.1371/journal.pone.0116570  1
2015 Wilson K, Mole DJ, Homer NZ, Iredale JP, Auer M, Webster SP. A magnetic bead-based ligand binding assay to facilitate human kynurenine 3-monooxygenase drug discovery. Journal of Biomolecular Screening. 20: 292-8. PMID 25296660 DOI: 10.1177/1087057114554171  1
2014 Gregoire P, Engelbrektson A, Hubbard CG, Metlagel Z, Csencsits R, Auer M, Conrad ME, Thieme J, Northrup P, Coates JD. Control of sulfidogenesis through bio-oxidation of H2S coupled to (per)chlorate reduction. Environmental Microbiology Reports. 6: 558-64. PMID 25756108 DOI: 10.1111/1758-2229.12156  1
2014 Berleman JE, Allen S, Danielewicz MA, Remis JP, Gorur A, Cunha J, Hadi MZ, Zusman DR, Northen TR, Witkowska HE, Auer M. The lethal cargo of Myxococcus xanthus outer membrane vesicles. Frontiers in Microbiology. 5: 474. PMID 25250022 DOI: 10.3389/Fmicb.2014.00474  1
2014 Sarkar P, Bosneaga E, Yap EG, Das J, Tsai WT, Cabal A, Neuhaus E, Maji D, Kumar S, Joo M, Yakovlev S, Csencsits R, Yu Z, Bajaj C, Downing KH, ... Auer M, et al. Electron tomography of cryo-immobilized plant tissue: a novel approach to studying 3D macromolecular architecture of mature plant cell walls in situ. Plos One. 9: e106928. PMID 25207917 DOI: 10.1371/Journal.Pone.0106928  1
2014 Tsai WT, Hassan A, Sarkar P, Correa J, Metlagel Z, Jorgens DM, Auer M. From voxels to knowledge: a practical guide to the segmentation of complex electron microscopy 3D-data. Journal of Visualized Experiments : Jove. e51673. PMID 25145678 DOI: 10.3791/51673  0.01
2014 Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M. Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling. Frontiers in Microbiology. 5: 307. PMID 25101058 DOI: 10.3389/Fmicb.2014.00307  0.01
2014 Dougherty MJ, Tran HM, Stavila V, Knierim B, George A, Auer M, Adams PD, Hadi MZ. Cellulosic biomass pretreatment and sugar yields as a function of biomass particle size. Plos One. 9: e100836. PMID 24971883 DOI: 10.1371/journal.pone.0100836  1
2014 Schaudinn C, Stoodley P, Hall-Stoodley L, Gorur A, Remis J, Wu S, Auer M, Hertwig S, Guerrero-Given D, Hu FZ, Ehrlich GD, Costerton JW, Robinson DH, Webster P. Death and transfiguration in static Staphylococcus epidermidis cultures. Plos One. 9: e100002. PMID 24964210 DOI: 10.1371/Journal.Pone.0100002  1
2014 Beard PM, Griffiths SJ, Gonzalez O, Haga IR, Pechenick Jowers T, Reynolds DK, Wildenhain J, Tekotte H, Auer M, Tyers M, Ghazal P, Zimmer R, Haas J. A loss of function analysis of host factors influencing Vaccinia virus replication by RNA interference. Plos One. 9: e98431. PMID 24901222 DOI: 10.1371/Journal.Pone.0098431  1
2014 Portal CF, Seifert JM, Buehler C, Meisner-Kober NC, Auer M. Novel 1:1 labeling and purification process for C-terminal thioester and single cysteine recombinant proteins using generic peptidic toolbox reagents. Bioconjugate Chemistry. 25: 1213-22. PMID 24866260 DOI: 10.1021/bc5000059  0.01
2014 Hintersteiner M, Kallen J, Schmied M, Graf C, Jung T, Mudd G, Shave S, Gstach H, Auer M. Identification and X-ray co-crystal structure of a small-molecule activator of LFA-1-ICAM-1 binding. Angewandte Chemie (International Ed. in English). 53: 4322-6. PMID 24692345 DOI: 10.1002/anie.201310240  0.01
2014 Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson JJ, Auer M, Wall JD, Mukhopadhyay A. Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility. Frontiers in Microbiology. 5: 77. PMID 24639670 DOI: 10.3389/Fmicb.2014.00077  1
2014 Shamir ER, Pappalardo E, Jorgens DM, Coutinho K, Tsai WT, Aziz K, Auer M, Tran PT, Bader JS, Ewald AJ. Twist1-induced dissemination preserves epithelial identity and requires E-cadherin. The Journal of Cell Biology. 204: 839-56. PMID 24590176 DOI: 10.1083/Jcb.201306088  1
2014 Oh JW, Chung WJ, Heo K, Jin HE, Lee BY, Wang E, Zueger C, Wong W, Meyer J, Kim C, Lee SY, Kim WG, Zemla M, Auer M, Hexemer A, et al. Biomimetic virus-based colourimetric sensors. Nature Communications. 5: 3043. PMID 24448217 DOI: 10.1038/ncomms4043  1
2014 MacGregor P, Ivens A, Shave S, Collie I, Gray D, Auer M, Matthews KR. High-throughput chemical screening for antivirulence developmental phenotypes in Trypanosoma brucei. Eukaryotic Cell. 13: 412-26. PMID 24442893 DOI: 10.1128/EC.00335-13  1
2014 Antonellis PJ, Pollock LM, Chou SW, Hassan A, Geng R, Chen X, Fuchs E, Alagramam KN, Auer M, McDermott BM. ACF7 is a hair-bundle antecedent, positioned to integrate cuticular plate actin and somatic tubulin. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 305-12. PMID 24381291 DOI: 10.1523/Jneurosci.1880-13.2014  1
2014 Huang H, Ceccarelli DF, Orlicky S, St-Cyr DJ, Ziemba A, Garg P, Plamondon S, Auer M, Sidhu S, Marinier A, Kleiger G, Tyers M, Sicheri F. E2 enzyme inhibition by stabilization of a low-affinity interface with ubiquitin. Nature Chemical Biology. 10: 156-163. PMID 24316736 DOI: 10.1038/Nchembio.1412  1
2014 Remis JP, Wei D, Gorur A, Zemla M, Haraga J, Allen S, Witkowska HE, Costerton JW, Berleman JE, Auer M. Bacterial social networks: structure and composition of Myxococcus xanthus outer membrane vesicle chains. Environmental Microbiology. 16: 598-610. PMID 23848955 DOI: 10.1111/1462-2920.12187  1
2013 Hintersteiner M, Auer M. A two-channel detection method for autofluorescence correction and efficient on-bead screening of one-bead one-compound combinatorial libraries using the COPAS fluorescence activated bead sorting system. Methods and Applications in Fluorescence. 1: 017001. PMID 29148437 DOI: 10.1088/2050-6120/1/1/017001  0.01
2013 Shave S, Auer M. CSBB-ConeExclusion, adapting structure based solution virtual screening to libraries on solid support. Journal of Chemical Information and Modeling. 53: 3156-62. PMID 24266324 DOI: 10.1021/ci400371q  0.01
2013 Eichorst SA, Varanasi P, Stavila V, Zemla M, Auer M, Singh S, Simmons BA, Singer SW. Community dynamics of cellulose-adapted thermophilic bacterial consortia. Environmental Microbiology. 15: 2573-87. PMID 23763762 DOI: 10.1111/1462-2920.12159  1
2013 Chiniquy D, Varanasi P, Oh T, Harholt J, Katnelson J, Singh S, Auer M, Simmons B, Adams PD, Scheller HV, Ronald PC. Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. Frontiers in Plant Science. 4: 83. PMID 23596448 DOI: 10.3389/fpls.2013.00083  1
2013 Neng L, Zhang W, Hassan A, Zemla M, Kachelmeier A, Fridberger A, Auer M, Shi X. Isolation and culture of endothelial cells, pericytes and perivascular resident macrophage-like melanocytes from the young mouse ear. Nature Protocols. 8: 709-20. PMID 23493068 DOI: 10.1038/Nprot.2013.033  0.01
2013 Varanasi P, Singh P, Auer M, Adams PD, Simmons BA, Singh S. Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment. Biotechnology For Biofuels. 6: 14. PMID 23356589 DOI: 10.1186/1754-6834-6-14  1
2013 Shin JB, Krey JF, Hassan A, Metlagel Z, Tauscher AN, Pagana JM, Sherman NE, Jeffery ED, Spinelli KJ, Zhao H, Wilmarth PA, Choi D, David LL, Auer M, Barr-Gillespie PG. Molecular architecture of the chick vestibular hair bundle. Nature Neuroscience. 16: 365-74. PMID 23334578 DOI: 10.1038/Nn.3312  1
2013 Berleman J, Auer M. The role of bacterial outer membrane vesicles for intra- and interspecies delivery. Environmental Microbiology. 15: 347-54. PMID 23227894 DOI: 10.1111/1462-2920.12048  0.01
2013 Chen X, Vega-Sánchez ME, Verhertbruggen Y, Chiniquy D, Canlas PE, Fagerström A, Prak L, Christensen U, Oikawa A, Chern M, Zuo S, Lin F, Auer M, Willats WGT, Bartley L, et al. Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification Molecular Plant. 6: 570-573. PMID 23180670 DOI: 10.1093/Mp/Sss135  1
2013 Yang F, Mitra P, Zhang L, Prak L, Verhertbruggen Y, Kim JS, Sun L, Zheng K, Tang K, Auer M, Scheller HV, Loqué D. Engineering secondary cell wall deposition in plants. Plant Biotechnology Journal. 11: 325-35. PMID 23140549 DOI: 10.1111/pbi.12016  1
2012 Loss LA, Bebis G, Chang H, Auer M, Sarkar P, Parvin B. Automatic Segmentation and Quantification of Filamentous Structures in Electron Tomography. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2012: 170-177. PMID 28090597 DOI: 10.1145/2382936.2382958  0.01
2012 Knierim B, Luef B, Wilmes P, Webb RI, Auer M, Comolli LR, Banfield JF. Correlative microscopy for phylogenetic and ultrastructural characterization of microbial communities. Environmental Microbiology Reports. 4: 36-41. PMID 23757227 DOI: 10.1111/J.1758-2229.2011.00275.X  1
2012 Hintersteiner M, Knox AJ, Mudd G, Auer M. Towards mimicking short linear peptide motifs: identification of new mixed α,β-peptidomimetic ligands for SLAM-Associated Protein (SAP) by confocal on-bead screening. Journal of Chemical Biology. 5: 63-79. PMID 23284589 DOI: 10.1007/s12154-011-0071-9  1
2012 Petersen PD, Lau J, Ebert B, Yang F, Verhertbruggen Y, Kim JS, Varanasi P, Suttangkakul A, Auer M, Loqué D, Scheller HV. Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants. Biotechnology For Biofuels. 5: 84. PMID 23181474 DOI: 10.1186/1754-6834-5-84  1
2012 Varanasi P, Singh P, Arora R, Adams PD, Auer M, Simmons BA, Singh S. Understanding changes in lignin of Panicum virgatum and Eucalyptus globulus as a function of ionic liquid pretreatment. Bioresource Technology. 126: 156-61. PMID 23073103 DOI: 10.1016/j.biortech.2012.08.070  1
2012 Rodríguez-Martín S, Kropp KA, Wilhelmi V, Lisnic VJ, Hsieh WY, Blanc M, Livingston A, Busche A, Tekotte H, Messerle M, Auer M, Fraser I, Jonjic S, Angulo A, Reddehase MJ, et al. Ablation of the regulatory IE1 protein of murine cytomegalovirus alters in vivo pro-inflammatory TNF-alpha production during acute infection. Plos Pathogens. 8: e1002901. PMID 22952450 DOI: 10.1371/journal.ppat.1002901  0.01
2012 Hintersteiner M, Buehler C, Auer M. On-bead screens sample narrower affinity ranges of protein-ligand interactions compared to equivalent solution assays. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 13: 3472-80. PMID 22829563 DOI: 10.1002/cphc.201200117  0.01
2012 Zhang W, Dai M, Fridberger A, Hassan A, Degagne J, Neng L, Zhang F, He W, Ren T, Trune D, Auer M, Shi X. Perivascular-resident macrophage-like melanocytes in the inner ear are essential for the integrity of the intrastrial fluid-blood barrier. Proceedings of the National Academy of Sciences of the United States of America. 109: 10388-93. PMID 22689949 DOI: 10.1073/Pnas.1205210109  0.01
2012 Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman HY, Hazen TC, Jansson JK. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environmental Microbiology. 14: 2405-16. PMID 22616650 DOI: 10.1111/J.1462-2920.2012.02780.X  1
2012 Parsons HT, Christiansen K, Knierim B, Carroll A, Ito J, Batth TS, Smith-Moritz AM, Morrison S, McInerney P, Hadi MZ, Auer M, Mukhopadhyay A, Petzold CJ, Scheller HV, Loqué D, et al. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Plant Physiology. 159: 12-26. PMID 22430844 DOI: 10.1104/Pp.111.193151  1
2012 Vega-Sánchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald PC. Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice. Plant Physiology. 159: 56-69. PMID 22388489 DOI: 10.1104/Pp.112.195495  1
2012 Ewald AJ, Huebner RJ, Palsdottir H, Lee JK, Perez MJ, Jorgens DM, Tauscher AN, Cheung KJ, Werb Z, Auer M. Mammary collective cell migration involves transient loss of epithelial features and individual cell migration within the epithelium. Journal of Cell Science. 125: 2638-54. PMID 22344263 DOI: 10.1242/Dev.086744  1
2012 Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD. Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 1702-7. PMID 22307634 DOI: 10.1073/Pnas.1112905109  1
2011 Yin L, Verhertbruggen Y, Oikawa A, Manisseri C, Knierim B, Prak L, Jensen JK, Knox JP, Auer M, Willats WG, Scheller HV. The cooperative activities of CSLD2, CSLD3, and CSLD5 are required for normal Arabidopsis development. Molecular Plant. 4: 1024-37. PMID 21471331 DOI: 10.1093/mp/ssr026  0.01
2011 Benoit R, Auer M. A direct way of redox sensing. Rna Biology. 8: 18-23. PMID 21220941 DOI: 10.4161/rna.8.1.13555  0.01
2011 Bharadwaj R, Wong A, Knierim B, Singh S, Holmes BM, Auer M, Simmons BA, Adams PD, Singh AK. High-throughput enzymatic hydrolysis of lignocellulosic biomass via in-situ regeneration. Bioresource Technology. 102: 1329-37. PMID 20884206 DOI: 10.1016/j.biortech.2010.08.108  1
2010 Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, ... ... Auer M, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (New York, N.Y.). 330: 204-8. PMID 20736401 DOI: 10.1126/Science.1195979  1
2010 Weidemann T, Seifert JM, Hintersteiner M, Auer M. Analysis of protein-small molecule interactions by microscale equilibrium dialysis and its application as a secondary confirmation method for on-bead screening. Journal of Combinatorial Chemistry. 12: 647-54. PMID 20681515 DOI: 10.1021/cc100057e  0.01
2010 Hintersteiner M, Ambrus G, Bednenko J, Schmied M, Knox AJ, Meisner NC, Gstach H, Seifert JM, Singer EL, Gerace L, Auer M. Identification of a small molecule inhibitor of importin β mediated nuclear import by confocal on-bead screening of tagged one-bead one-compound libraries. Acs Chemical Biology. 5: 967-79. PMID 20677820 DOI: 10.1021/Cb100094K  1
2010 Remis JP, Costerton JW, Auer M. Biofilms: structures that may facilitate cell-cell interactions. The Isme Journal. 4: 1085-7. PMID 20631806 DOI: 10.1038/ismej.2010.105  0.01
2010 Benoit RM, Meisner NC, Kallen J, Graff P, Hemmig R, Cèbe R, Ostermeier C, Widmer H, Auer M. The X-ray crystal structure of the first RNA recognition motif and site-directed mutagenesis suggest a possible hur redox sensing mechanism Journal of Molecular Biology. 397: 1231-1244. PMID 20219472 DOI: 10.1016/j.jmb.2010.02.043  1
2010 Li C, Knierim B, Manisseri C, Arora R, Scheller HV, Auer M, Vogel KP, Simmons BA, Singh S. Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification. Bioresource Technology. 101: 4900-6. PMID 19945861 DOI: 10.1016/J.Biortech.2009.10.066  0.01
2009 Sarkar P, Bosneaga E, Auer M. Plant cell walls throughout evolution: towards a molecular understanding of their design principles. Journal of Experimental Botany. 60: 3615-35. PMID 19687127 DOI: 10.1093/Jxb/Erp245  0.01
2009 Debolt S, Scheible WR, Schrick K, Auer M, Beisson F, Bischoff V, Bouvier-Navé P, Carroll A, Hematy K, Li Y, Milne J, Nair M, Schaller H, Zemla M, Somerville C. Mutations in UDP-glucose:Sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds Plant Physiology. 151: 78-87. PMID 19641030 DOI: 10.1104/Pp.109.140582  1
2009 Hintersteiner M, Kimmerlin T, Kalthoff F, Stoeckli M, Garavel G, Seifert JM, Meisner NC, Uhl V, Buehler C, Weidemann T, Auer M. Single bead labeling method for combining confocal fluorescence on-bead screening and solution validation of tagged one-bead one-compound libraries. Chemistry & Biology. 16: 724-35. PMID 19635409 DOI: 10.1016/j.chembiol.2009.06.011  0.01
2009 Hintersteiner M, Buehler C, Uhl V, Schmied M, Müller J, Kottig K, Auer M. Confocal nanoscanning, bead picking (CONA): PickoScreen microscopes for automated and quantitative screening of one-bead one-compound libraries. Journal of Combinatorial Chemistry. 11: 886-94. PMID 19603813 DOI: 10.1021/cc900059q  0.01
2009 Hintersteiner M, Kimmerlin T, Garavel G, Schindler T, Bauer R, Meisner NC, Seifert JM, Uhl V, Auer M. A highly potent and cellularly active beta-peptidic inhibitor of the p53/hDM2 interaction. Chembiochem : a European Journal of Chemical Biology. 10: 994-8. PMID 19267375 DOI: 10.1002/cbic.200800803  0.01
2009 Palsdottir H, Remis JP, Schaudinn C, O'Toole E, Lux R, Shi W, McDonald KL, Costerton JW, Auer M. Three-dimensional macromolecular organization of cryofixed Myxococcus xanthus biofilms as revealed by electron microscopic tomography. Journal of Bacteriology. 191: 2077-82. PMID 19168614 DOI: 10.1128/Jb.01333-08  1
2009 Shawkey MD, Saranathan V, Pálsdóttir H, Crum J, Ellisman MH, Auer M, Prum RO. Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotonic nanostructure. Journal of the Royal Society, Interface / the Royal Society. 6: S213-20. PMID 19158016 DOI: 10.1098/Rsif.2008.0374.Focus  1
2009 Meisner NC, Hintersteiner M, Seifert JM, Bauer R, Benoit RM, Widmer A, Schindler T, Uhl V, Lang M, Gstach H, Auer M. Terminal adenosyl transferase activity of posttranscriptional regulator HuR revealed by confocal on-bead screening. Journal of Molecular Biology. 386: 435-50. PMID 19109971 DOI: 10.1016/j.jmb.2008.12.020  0.01
2009 Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF. Natural acidophilic biofilm communities reflect distinct organismal and functional organization. The Isme Journal. 3: 266-70. PMID 18843299 DOI: 10.1038/Ismej.2008.90  1
2008 Hintersteiner M, Auer M. Single-bead, single-molecule, single-cell fluorescence: technologies for drug screening and target validation. Annals of the New York Academy of Sciences. 1130: 1-11. PMID 18596327 DOI: 10.1196/annals.1430.055  0.01
2008 Hintersteiner M, Weidemann T, Kimmerlin T, Filiz N, Buehler C, Auer M. Covalent fluorescence labeling of His-tagged proteins on the surface of living cells. Chembiochem : a European Journal of Chemical Biology. 9: 1391-5. PMID 18461582 DOI: 10.1002/cbic.200800089  0.01
2008 Auer M, Koster AJ, Ziese U, Bajaj C, Volkmann N, Wang da N, Hudspeth AJ. Three-dimensional architecture of hair-bundle linkages revealed by electron-microscopic tomography. Journal of the Association For Research in Otolaryngology : Jaro. 9: 215-24. PMID 18421501 DOI: 10.1007/S10162-008-0114-2  1
2007 Downing KH, Sui H, Auer M. Electron tomography: a 3D view of the subcellular world. Analytical Chemistry. 79: 7949-57. PMID 18044021 DOI: 10.1021/Ac071982U  1
2007 Persson S, Paredez A, Carroll A, Palsdottir H, Doblin M, Poindexter P, Khitrov N, Auer M, Somerville CR. Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 104: 15566-15571. PMID 17878302 DOI: 10.1073/Pnas.0706592104  1
2007 Meisner NC, Hintersteiner M, Mueller K, Bauer R, Seifert JM, Naegeli HU, Ottl J, Oberer L, Guenat C, Moss S, Harrer N, Woisetschlaeger M, Buehler C, Uhl V, Auer M. Identification and mechanistic characterization of low-molecular-weight inhibitors for HuR. Nature Chemical Biology. 3: 508-15. PMID 17632515 DOI: 10.1038/nchembio.2007.14  0.01
2007 Schaber JA, Triffo WJ, Suh SJ, Oliver JW, Hastert MC, Griswold JA, Auer M, Hamood AN, Rumbaugh KP. Pseudomonas aeruginosa forms biofilms in acute infection independent of cell-to-cell signaling. Infection and Immunity. 75: 3715-21. PMID 17562773 DOI: 10.1128/IAI.00586-07  1
2007 Weidemann T, Höfinger S, Müller K, Auer M. Beyond dimerization: a membrane-dependent activation model for interleukin-4 receptor-mediated signalling. Journal of Molecular Biology. 366: 1365-73. PMID 17223132 DOI: 10.1016/j.jmb.2006.11.095  0.01
2006 McDonald KL, Auer M. High-pressure freezing, cellular tomography, and structural cell biology Biotechniques. 41: 137-143. PMID 16925014  1
2006 Chrencik JE, Brooun A, Kraus ML, Recht MI, Kolatkar AR, Gye WH, Seifert JM, Widmer H, Auer M, Kuhn P. Structural and biophysical characterization of the EphB4·EphrinB2 protein-protein interaction and receptor specificity Journal of Biological Chemistry. 281: 28185-28192. PMID 16867992 DOI: 10.1074/jbc.M605766200  1
2005 Buehler C, Dreessen J, Mueller K, So PT, Schilb A, Hassiepen U, Stoeckli KA, Auer M. Multi-photon excitation of intrinsic protein fluorescence and its application to pharmaceutical drug screening. Assay and Drug Development Technologies. 3: 155-67. PMID 15871690 DOI: 10.1089/adt.2005.3.155  0.01
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