Year |
Citation |
Score |
2017 |
Klopfstein S, Massingham T, Goldman N. More on the Best Evolutionary Rate for Phylogenetic Analysis. Systematic Biology. PMID 28595363 DOI: 10.1093/Sysbio/Syx051 |
0.682 |
|
2012 |
Sipos B, Massingham T, Stütz AM, Goldman N. An improved protocol for sequencing of repetitive genomic regions and structural variations using mutagenesis and next generation sequencing. Plos One. 7: e43359. PMID 22912860 DOI: 10.1371/Journal.Pone.0043359 |
0.758 |
|
2012 |
Massingham T, Goldman N. Error-correcting properties of the SOLiD Exact Call Chemistry. Bmc Bioinformatics. 13: 145. PMID 22726842 DOI: 10.1186/1471-2105-13-145 |
0.685 |
|
2012 |
Massingham T, Goldman N. All Your Base: a fast and accurate probabilistic approach to base calling. Genome Biology. 13: R13. PMID 22377270 DOI: 10.1186/Gb-2012-13-2-R13 |
0.659 |
|
2012 |
San Mauro D, Gower DJ, Cotton JA, Zardoya R, Wilkinson M, Massingham T. Experimental design in phylogenetics: testing predictions from expected information. Systematic Biology. 61: 661-74. PMID 22328568 DOI: 10.1093/Sysbio/Sys028 |
0.39 |
|
2011 |
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, ... ... Massingham T, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82. PMID 21993624 DOI: 10.1038/Nature10530 |
0.754 |
|
2011 |
Sipos B, Massingham T, Jordan GE, Goldman N. PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment. Bmc Bioinformatics. 12: 104. PMID 21504561 DOI: 10.1186/1471-2105-12-104 |
0.744 |
|
2010 |
Flicek P, Aken BL, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Coates G, Fairley S, Fitzgerald S, Fernandez-Banet J, Gordon L, Gräf S, Haider S, ... ... Massingham T, et al. Ensembl's 10th year. Nucleic Acids Research. 38: D557-62. PMID 19906699 DOI: 10.1093/Nar/Gkp972 |
0.471 |
|
2009 |
San Mauro D, Gower DJ, Massingham T, Wilkinson M, Zardoya R, Cotton JA. Experimental design in caecilian systematics: phylogenetic information of mitochondrial genomes and nuclear rag1. Systematic Biology. 58: 425-38. PMID 20525595 DOI: 10.1093/Sysbio/Syp043 |
0.447 |
|
2009 |
Chor B, Horn D, Goldman N, Levy Y, Massingham T. Genomic DNA k-mer spectra: models and modalities. Genome Biology. 10: R108. PMID 19814784 DOI: 10.1186/Gb-2009-10-10-R108 |
0.683 |
|
2008 |
Taylor MS, Massingham T, Hayashizaki Y, Carninci P, Goldman N, Semple CA. Rapidly evolving human promoter regions. Nature Genetics. 40: 1262-3; author reply. PMID 18957975 DOI: 10.1038/Ng1108-1262 |
0.662 |
|
2008 |
Massingham T. Detecting the presence and location of selection in proteins. Methods in Molecular Biology (Clifton, N.J.). 452: 311-329. PMID 18566771 DOI: 10.1007/978-1-60327-159-2_15 |
0.331 |
|
2008 |
Tress ML, Wesselink JJ, Frankish A, López G, Goldman N, Löytynoja A, Massingham T, Pardi F, Whelan S, Harrow J, Valencia A. Determination and validation of principal gene products. Bioinformatics (Oxford, England). 24: 11-7. PMID 18006548 DOI: 10.1093/Bioinformatics/Btm547 |
0.709 |
|
2007 |
Massingham T, Goldman N. Statistics of the log-det estimator. Molecular Biology and Evolution. 24: 2277-85. PMID 17703055 DOI: 10.1093/Molbev/Msm160 |
0.616 |
|
2007 |
Geuten K, Massingham T, Darius P, Smets E, Goldman N. Experimental design criteria in phylogenetics: where to add taxa. Systematic Biology. 56: 609-22. PMID 17654365 DOI: 10.1080/10635150701499563 |
0.644 |
|
2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Massingham T, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.73 |
|
2007 |
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, ... ... Massingham T, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research. 17: 760-74. PMID 17567995 DOI: 10.1101/Gr.6034307 |
0.744 |
|
2006 |
Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM. Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins. Genome Biology. 7: R89. PMID 17029626 DOI: 10.1186/Gb-2006-7-10-R89 |
0.672 |
|
2005 |
Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM. Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins. Genome Biology. 6: R56. PMID 15998445 DOI: 10.1186/Gb-2005-6-7-R56 |
0.686 |
|
2005 |
Massingham T, Goldman N. Detecting amino acid sites under positive selection and purifying selection. Genetics. 169: 1753-62. PMID 15654091 DOI: 10.1534/Genetics.104.032144 |
0.661 |
|
2000 |
Massingham T, Goldman N. EDIBLE: experimental design and information calculations in phylogenetics. Bioinformatics (Oxford, England). 16: 294-5. PMID 10869025 DOI: 10.1093/Bioinformatics/16.3.294 |
0.652 |
|
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