Frederick R. Blattner, Ph.D. - Publications

Affiliations: 
Genetics University of Wisconsin, Madison, Madison, WI 
Area:
Genomics, gene regulation, bacteria, bioinformatics, DNA chips, genome engineering
Website:
http://www.genome.wisc.edu/information/fblattner.html

124 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Blattner C, Blattner FR, Biksacky M, Miller W. Rapid bioprocess culture characterization: System designed to enable real-time monitoring of microbial cultures Genetic Engineering and Biotechnology News. 35: 28-29. DOI: 10.1089/gen.35.05.15  0.68
2013 Förster S, Brandt M, Mottok DS, Zschüttig A, Zimmermann K, Blattner FR, Gunzer F, Pöhlmann C. Secretory expression of biologically active human Herpes virus interleukin-10 analogues in Escherichia coli via a modified Sec-dependent transporter construct. Bmc Biotechnology. 13: 82. PMID 24093616 DOI: 10.1186/1472-6750-13-82  0.68
2013 Frisch D, Novy R, Landry C, Kirkpatrick H, Pósfai G, Blattner FR. DNA vaccines free from mobile DNA Genetic Engineering and Biotechnology News. 33: 34. DOI: 10.1089/gen.33.17.17  0.68
2012 Pöhlmann C, Brandt M, Mottok DS, Zschüttig A, Campbell JW, Blattner FR, Frisch D, Gunzer F. Periplasmic delivery of biologically active human interleukin-10 in Escherichia coli via a sec-dependent signal peptide. Journal of Molecular Microbiology and Biotechnology. 22: 1-9. PMID 22353729 DOI: 10.1159/000336043  0.68
2012 Csörgo B, Fehér T, Tímár E, Blattner FR, Pósfai G. Low-mutation-rate, reduced-genome Escherichia coli: An improved host for faithful maintenance of engineered genetic constructs Microbial Cell Factories. 11. PMID 22264280 DOI: 10.1186/1475-2859-11-11  0.68
2012 Fehér T, Karcagi I, Blattner FR, Pósfai G. Bacteriophage recombineering in the lytic state using the lambda red recombinases Microbial Biotechnology. 5: 466-476. PMID 21910851 DOI: 10.1111/j.1751-7915.2011.00292.x  0.68
2011 Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G, San Francisco MJ, Charkowski AO, Py B, Bell K, ... ... Blattner FR, et al. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193: 2076-7. PMID 21217001 DOI: 10.1128/JB.01513-10  0.68
2010 Umenhoffer K, Fehér T, Balikó G, Ayaydin F, Pósfai J, Blattner FR, Pósfai G. Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications Microbial Cell Factories. 9. PMID 20492662 DOI: 10.1186/1475-2859-9-38  0.68
2008 Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, Gibbs RA, Csörgo B, Pósfai G, Weinstock GM, Blattner FR. The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse Journal of Bacteriology. 190: 2597-2606. PMID 18245285 DOI: 10.1128/JB.01695-07  0.68
2008 Durfee T, Hansen AM, Zhi H, Blattner FR, Ding JJ. Transcription profiling of the stringent response in Escherichia coli Journal of Bacteriology. 190: 1084-1096. PMID 18039766 DOI: 10.1128/JB.01092-07  0.68
2008 Glasner JD, Plunkett G, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, ... ... Blattner FR, et al. Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Research. 36: D519-23. PMID 17999997 DOI: 10.1093/nar/gkm973  0.68
2008 Pleines T, Blattner FR. Phylogeographic implications of an AFLP phylogeny of the American diploid Hordeum species (Poaceae: Triticeae) Taxon. 57: 875-881.  0.04
2007 Greene JM, Plunkett G, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, ... ... Blattner FR, et al. A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. Advances in Experimental Medicine and Biology. 603: 28-42. PMID 17966403  0.68
2007 King MR, Vimr RP, Steenbergen SM, Spanjaard L, Plunkett G, Blattner FR, Vimr ER. Escherichia coli K1-specific bacteriophage CUS-3 distribution and function in phase-variable capsular polysialic acid O acetylation Journal of Bacteriology. 189: 6447-6456. PMID 17601779 DOI: 10.1128/JB.00657-07  0.68
2007 Sharma SS, Campbell JW, Frisch D, Blattner FR, Harcum SW. Expression of two recombinant chloramphenicol acetyltransferase variants in highly reduced genome Escherichia coli strains Biotechnology and Bioengineering. 98: 1056-1070. PMID 17497738 DOI: 10.1002/bit.21491  0.68
2007 Sharma SS, Blattner FR, Harcum SW. Recombinant protein production in an Escherichia coli reduced genome strain Metabolic Engineering. 9: 133-141. PMID 17126054 DOI: 10.1016/j.ymben.2006.10.002  0.68
2007 Greene JM, Anderson B, Liss P, Shetty P, Blattner FR, Perna NT, Zaremba S, Wong M, Whitmore J, Shi C, Shaull L, Shaker M, Pot D, Hampton T, Rusch M, et al. A new asset for pathogen informatics - The Enteropathogen Resource Integration Center (ERIC), an NIAID bioinformatics resource center for biodefense and emerging/re-emerging infectious disease Advances in Experimental Medicine and Biology. 603: 28-42. DOI: 10.1007/978-0-387-72124-8_4  0.68
2007 Greene J, Perna N, Blattner F. ERIC-comprehensive bioinformatics resources for enteropathogens [4] Microbe. 2: 322-323.  0.68
2006 Herring CD, Raghunathan A, Honisch C, Patel T, Applebee MK, Joyce AR, Albert TJ, Blattner FR, van den Boom D, Cantor CR, Palsson BØ. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nature Genetics. 38: 1406-12. PMID 17086184 DOI: 10.1038/ng1906  0.68
2006 Novak JP, Kim SY, Xu J, Modlich O, Volsky DJ, Honys D, Slonczewski JL, Bell DA, Blattner FR, Blumwald E, Boerma M, Cosio M, Gatalica Z, Hajduch M, Hidalgo J, et al. Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution. Biology Direct. 1: 27. PMID 16959036 DOI: 10.1186/1745-6150-1-27  0.68
2006 Brinkley C, Burland V, Keller R, Rose DJ, Boutin AT, Klink SA, Blattner FR, Kaper JB. Nucleotide sequence analysis of the enteropathogenic Escherichia coli adherence factor plasmid pMAR7 Infection and Immunity. 74: 5408-5413. PMID 16926437 DOI: 10.1128/IAI.01840-05  0.68
2006 Xie Y, Kolisnycheiko V, Paul-Satyasesla M, Elliott S, Parthasarathy G, Yao Y, Plunkett G, Blattner FR, Kim KS. Identification and characterization of Escherichia coli RS218-derived islands in the pathogenesis of E. coli meningitis Journal of Infectious Diseases. 194: 358-364. PMID 16826484 DOI: 10.1086/505429  0.68
2006 Giel JL, Rodionov D, Liu M, Blattner FR, Kiley PJ. IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli Molecular Microbiology. 60: 1058-1075. PMID 16677314 DOI: 10.1111/j.1365-2958.2006.05160.x  0.68
2006 Sung BH, Lee CH, Yu BJ, Lee JH, Lee JY, Kim MS, Blattner FR, Kim SC. Development of a biofilm production-deficient Escherichia coli strain as a host for biotechnological applications Applied and Environmental Microbiology. 72: 3336-3342. PMID 16672475 DOI: 10.1128/AEM.72.5.3336-3342.2006  0.68
2006 Pósfai G, Plunkett G, Fehér T, Frisch D, Keil GM, Umenhoffer K, Kolisnychenko V, Stahl B, Sharma SS, De Arruda M, Burland V, Harcum SW, Blattner FR. Emergent properties of reduced-genome Escherichia coli Science. 312: 1044-1046. PMID 16645050 DOI: 10.1126/science.1126439  0.68
2006 Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, et al. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Research. 34: 1-9. PMID 16397293 DOI: 10.1093/nar/gkj405  0.68
2006 Blattner FR. Streamlining recombinant host organisms Industrial Bioprocessing. 28: 7-8.  0.68
2005 Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid Biotechnology and Bioengineering. 91: 643-648. PMID 15962337 DOI: 10.1002/bit.20542  0.68
2005 Hansen AM, Qiu Y, Yeh N, Blattner FR, Durfee T, Jin DJ. SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli Molecular Microbiology. 56: 719-734. PMID 15819627 DOI: 10.1111/j.1365-2958.2005.04567.x  0.68
2005 Liu M, Durfee T, Cabrera JE, Zhao K, Jin DJ, Blattner FR. Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli Journal of Biological Chemistry. 280: 15921-15927. PMID 15705577 DOI: 10.1074/jbc.M414050200  0.68
2005 Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR. Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function Journal of Bacteriology. 187: 1135-1160. PMID 15659690 DOI: 10.1128/JB.187.3.1135-1160.2005  0.68
2004 Zhou S, Kile A, Bechner M, Place M, Kvikstad E, Deng W, Wei J, Severin J, Runnheim R, Churas C, Forrest D, Dimalanta ET, Lamers C, Burland V, Blattner FR, et al. Single-molecule approach to bacterial genomic comparisons via optical mapping. Journal of Bacteriology. 186: 7773-82. PMID 15516592 DOI: 10.1128/JB.186.22.7773-7782.2004  0.68
2004 Łobocka MB, Rose DJ, Plunkett G, Rusin M, Samojedny A, Lehnherr H, Yarmolinsky MB, Blattner FR. Genome of bacteriophage P1 Journal of Bacteriology. 186: 7032-7068. PMID 15489417 DOI: 10.1128/JB.186.21.7032-7068.2004  0.68
2004 Herring CD, Blattner FR. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR Journal of Bacteriology. 186: 6714-6720. PMID 15466022 DOI: 10.1128/JB.186.20.6714-6720.2004  0.68
2004 Kang Y, Durfee T, Glasner JD, Qiu Y, Frisch D, Winterberg KM, Blattner FR. Systematic mutagenesis of the Escherichia coli genome Journal of Bacteriology. 186: 4921-4930. PMID 15262929 DOI: 10.1128/JB.186.15.4921-4930.2004  0.68
2004 Darling ACE, Mau B, Blattner FR, Perna NT. Mauve: Multiple alignment of conserved genomic sequence with rearrangements Genome Research. 14: 1394-1403. PMID 15231754 DOI: 10.1101/gr.2289704  0.68
2004 Buckles EL, Bahrani-Mougeot FK, Molina A, Lockatell CV, Johnson DE, Drachenberg CB, Burland V, Blattner FR, Donnenberg MS. Identification and characterization of a novel uropathogenic Escherichia coli-associated fimbrial gene cluster Infection and Immunity. 72: 3890-3901. PMID 15213132 DOI: 10.1128/IAI.72.7.3890-3901.2004  0.68
2004 Herring CD, Blattner FR. Conditional Lethal Amber Mutations in Essential Escherichia coli Genes Journal of Bacteriology. 186: 2673-2681. PMID 15090508 DOI: 10.1128/JB.186.9.2673-2681.2004  0.68
2004 Darling AE, Mau B, Blattner FR, Perna NT. GRIL: genome rearrangement and inversion locator. Bioinformatics (Oxford, England). 20: 122-4. PMID 14693819 DOI: 10.1093/bioinformatics/btg378  0.68
2003 Gutiérrez-Ríos RM, Rosenblueth DA, Loza JA, Huerta AM, Glasner JD, Blattner FR, Collado-Vides J. Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles. Genome Research. 13: 2435-43. PMID 14597655 DOI: 10.1101/gr.1387003  0.68
2003 Allen TE, Herrgård MJ, Liu M, Qiu Y, Glasner JD, Blattner FR, Palsson BØ. Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. Journal of Bacteriology. 185: 6392-9. PMID 14563874 DOI: 10.1128/JB.185.21.6392-6399.2003  0.68
2003 Nishi J, Sheikh J, Mizuguchi K, Luisi B, Burland V, Boutin A, Rose DJ, Blattner FR, Nataro JP. The export of coat protein from enteroaggregative Escherichia coli by a specific ATP-binding cassette transporter system. The Journal of Biological Chemistry. 278: 45680-9. PMID 12933818 DOI: 10.1074/jbc.M306413200  0.68
2003 Bockhorst J, Qiu Y, Glasner J, Liu M, Blattner F, Craven M. Predicting bacterial transcription units using sequence and expression data. Bioinformatics (Oxford, England). 19: i34-43. PMID 12855435 DOI: 10.1093/bioinformatics/btg1003  0.68
2003 Herring CD, Glasner JD, Blattner FR. Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli. Gene. 311: 153-63. PMID 12853150 DOI: 10.1016/S0378-1119(03)00585-7  0.68
2003 Roesch PL, Redford P, Batchelet S, Moritz RL, Pellett S, Haugen BJ, Blattner FR, Welch RA. Uropathogenic Escherichia coli use d-serine deaminase to modulate infection of the murine urinary tract. Molecular Microbiology. 49: 55-67. PMID 12823810 DOI: 10.1046/j.1365-2958.2003.03543.x  0.68
2003 Wei J, Goldberg MB, Burland V, Venkatesan MM, Deng W, Fournier G, Mayhew GF, Plunkett G, Rose DJ, Darling A, Mau B, Perna NT, Payne SM, Runyen-Janecky LJ, Zhou S, ... ... Blattner FR, et al. Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infection and Immunity. 71: 2775-86. PMID 12704152 DOI: 10.1128/IAI.71.5.2775-2786.2003  0.68
2003 Deng W, Liou SR, Plunkett G, Mayhew GF, Rose DJ, Burland V, Kodoyianni V, Schwartz DC, Blattner FR. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. Journal of Bacteriology. 185: 2330-7. PMID 12644504 DOI: 10.1128/JB.185.7.2330-2337.2003  0.68
2003 Glasner JD, Liss P, Plunkett G, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B, Blattner FR, Perna NT. ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Research. 31: 147-51. PMID 12519969 DOI: 10.1093/nar/gkg125  0.68
2002 Welch RA, Burland V, Plunkett G, Redford P, Roesch P, Rasko D, Buckles EL, Liou SR, Boutin A, Hackett J, Stroud D, Mayhew GF, Rose DJ, Zhou S, Schwartz DC, ... ... Blattner FR, et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 99: 17020-4. PMID 12471157 DOI: 10.1073/pnas.252529799  0.68
2002 Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, ... ... Blattner FR, et al. A whole-genome shotgun optical map of Yersinia pestis strain KIM. Applied and Environmental Microbiology. 68: 6321-31. PMID 12450857 DOI: 10.1128/AEM.68.12.6321-6331.2002  0.68
2002 Nuwaysir EF, Huang W, Albert TJ, Singh J, Nuwaysir K, Pitas A, Richmond T, Gorski T, Berg JP, Ballin J, McCormick M, Norton J, Pollock T, Sumwalt T, Butcher L, ... ... Blattner F, et al. Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Research. 12: 1749-55. PMID 12421762 DOI: 10.1101/gr.362402  0.68
2002 Torres AG, Giron JA, Perna NT, Burland V, Blattner FR, Avelino-Flores F, Kaper JB. Identification and characterization of lpfABCC'DE, a fimbrial operon of enterohemorrhagic Escherichia coli O157:H7. Infection and Immunity. 70: 5416-27. PMID 12228266 DOI: 10.1128/IAI.70.10.5416-5427.2002  0.68
2002 Torres AG, Perna NT, Burland V, Ruknudin A, Blattner FR, Kaper JB. Characterization of Cah, a calcium-binding and heat-extractable autotransporter protein of enterohaemorrhagic Escherichia coli. Molecular Microbiology. 45: 951-66. PMID 12180916 DOI: 10.1046/j.1365-2958.2002.03094.x  0.68
2002 Cheng Z, Dong F, Langdon T, Ouyang S, Buell CR, Gu M, Blattner FR, Jiang J. Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. The Plant Cell. 14: 1691-704. PMID 12172016 DOI: 10.1105/tpc.003079  0.68
2002 Deng W, Burland V, Plunkett G, Boutin A, Mayhew GF, Liss P, Perna NT, Rose DJ, Mau B, Zhou S, Schwartz DC, Fetherston JD, Lindler LE, Brubaker RR, Plano GV, ... ... Blattner FR, et al. Genome sequence of Yersinia pestis KIM. Journal of Bacteriology. 184: 4601-11. PMID 12142430 DOI: 10.1128/JB.184.16.4601-4611.2002  0.68
2002 Kolisnychenko V, Plunkett G, Herring CD, Fehér T, Pósfai J, Blattner FR, Pósfai G. Engineering a reduced Escherichia coli genome. Genome Research. 12: 640-7. PMID 11932248 DOI: 10.1101/gr.217202  0.68
2002 Kudva IT, Evans PS, Perna NT, Barrett TJ, DeCastro GJ, Ausubel FM, Blattner FR, Calderwood SB. Polymorphic amplified typing sequences provide a novel approach to Escherichia coli O157:H7 strain typing. Journal of Clinical Microbiology. 40: 1152-9. PMID 11923324 DOI: 10.1128/JCM.40.4.1152-1159.2002  0.68
2002 Kudva IT, Evans PS, Perna NT, Barrett TJ, Ausubel FM, Blattner FR, Calderwood SB. Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms. Journal of Bacteriology. 184: 1873-9. PMID 11889093 DOI: 10.1128/JB.184.7.1873-1879.2002  0.68
2002 Heimer SR, Welch RA, Perna NT, Pósfai G, Evans PS, Kaper JB, Blattner FR, Mobley HL. Urease of enterohemorrhagic Escherichia coli: evidence for regulation by fur and a trans-acting factor. Infection and Immunity. 70: 1027-31. PMID 11796646 DOI: 10.1128/IAI.70.2.1027-1031.2002  0.68
2002 Cerrina F, Blattner F, Huang W, Hue Y, Green R, Singh-Gasson S, Sussman M. Biological lithography: Development of a maskless microarray synthesizer for DNA chips Microelectronic Engineering. 61: 33-40. DOI: 10.1016/S0167-9317(02)00566-X  0.68
2002 Molla M, Andreae P, Glasner J, Blattner F, Shavlik J. Interpreting Microarray Expression Data Using Text Annotating the Genes Proceedings of the Joint Conference On Information Sciences. 6: 1224-1230. DOI: 10.1016/S0020-0255(02)00216-5  0.68
2001 Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R, Skiadas J, Ramanathan A, Perna NT, Plunkett G, Burland V, Mau B, Hackett J, ... Blattner FR, et al. Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Research. 11: 1584-93. PMID 11544203 DOI: 10.1101/gr.172101  0.68
2001 Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 8: 37-52. PMID 11339905 DOI: 10.1089/106652701300099074  0.68
2001 Venkatesan MM, Goldberg MB, Rose DJ, Grotbeck EJ, Burland V, Blattner FR. Complete DNA sequence and analysis of the large virulence plasmid of Shigella flexneri. Infection and Immunity. 69: 3271-85. PMID 11292750 DOI: 10.1128/IAI.69.5.3271-3285.2001  0.68
2001 Dong Y, Glasner JD, Blattner FR, Triplett EW. Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames. Applied and Environmental Microbiology. 67: 1911-21. PMID 11282649 DOI: 10.1128/AEM.67.4.1911-1921.2001  0.68
2001 Perna NT, Plunkett G, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao Y, ... ... Blattner FR, et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature. 409: 529-33. PMID 11206551 DOI: 10.1038/35054089  0.68
2001 Wei Y, Lee JM, Richmond C, Blattner FR, Rafalski JA, LaRossa RA. High-density microarray-mediated gene expression profiling of Escherichia coli. Journal of Bacteriology. 183: 545-56. PMID 11133948 DOI: 10.1128/JB.183.2.545-556.2001  0.68
2000 Selinger DW, Cheung KJ, Mei R, Johansson EM, Richmond CS, Blattner FR, Lockhart DJ, Church GM. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nature Biotechnology. 18: 1262-8. PMID 11101804 DOI: 10.1038/82367  0.68
2000 Ffrench-Constant RH, Waterfield N, Burland V, Perna NT, Daborn PJ, Bowen D, Blattner FR. A genomic sample sequence of the entomopathogenic bacterium Photorhabdus luminescens W14: potential implications for virulence. Applied and Environmental Microbiology. 66: 3310-29. PMID 10919786 DOI: 10.1128/AEM.66.8.3310-3329.2000  0.68
2000 Sherburne CK, Lawley TD, Gilmour MW, Blattner FR, Burland V, Grotbeck E, Rose DJ, Taylor DE. The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer. Nucleic Acids Research. 28: 2177-86. PMID 10773089  0.68
2000 Salgado H, Santos-Zavaleta A, Gama-Castro S, Millán-Zárate D, Blattner FR, Collado-Vides J. RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Research. 28: 65-7. PMID 10592182  0.68
1999 Pósfai G, Kolisnychenko V, Bereczki Z, Blattner FR. Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome. Nucleic Acids Research. 27: 4409-15. PMID 10536150 DOI: 10.1093/nar/27.22.4409  0.68
1999 Tao H, Bausch C, Richmond C, Blattner FR, Conway T. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. Journal of Bacteriology. 181: 6425-40. PMID 10515934  0.68
1999 Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR, Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nature Biotechnology. 17: 974-8. PMID 10504697 DOI: 10.1038/13664  0.68
1999 Allex CF, Shavlik JW, Blattner FR. Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies. Bioinformatics (Oxford, England). 15: 723-8. PMID 10498772 DOI: 10.1093/bioinformatics/15.9.723  0.68
1999 Richmond CS, Glasner JD, Mau R, Jin H, Blattner FR. Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Research. 27: 3821-35. PMID 10481021 DOI: 10.1093/nar/27.19.3821  0.68
1999 Chuang SE, Blattner FR. Identification of phosphate-regulated genes by differential expression in the UV-irradiated host system. Journal of Microbiological Methods. 37: 93-6. PMID 10395468 DOI: 10.1016/S0167-7012(99)00050-0  0.68
1999 Plunkett G, Rose DJ, Durfee TJ, Blattner FR. Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product. Journal of Bacteriology. 181: 1767-78. PMID 10074068  0.68
1998 Mahillon J, Kirkpatrick HA, Kijenski HL, Bloch CA, Rode CK, Mayhew GF, Rose DJ, Plunkett G, Burland V, Blattner FR. Subdivision of the Escherichia coli K-12 genome for sequencing: manipulation and DNA sequence of transposable elements introducing unique restriction sites. Gene. 223: 47-54. PMID 9858680 DOI: 10.1016/S0378-1119(98)00365-5  0.68
1998 Lindler LE, Plano GV, Burland V, Mayhew GF, Blattner FR. Complete DNA sequence and detailed analysis of the Yersinia pestis KIM5 plasmid encoding murine toxin and capsular antigen. Infection and Immunity. 66: 5731-42. PMID 9826348  0.68
1998 Gehring AM, DeMoll E, Fetherston JD, Mori I, Mayhew GF, Blattner FR, Walsh CT, Perry RD. Iron acquisition in plague: modular logic in enzymatic biogenesis of yersiniabactin by Yersinia pestis. Chemistry & Biology. 5: 573-86. PMID 9818149  0.68
1998 Perry RD, Straley SC, Fetherston JD, Rose DJ, Gregor J, Blattner FR. DNA sequencing and analysis of the low-Ca2+-response plasmid pCD1 of Yersinia pestis KIM5 Infection and Immunity. 66: 4611-4623. PMID 9746557  0.68
1998 Burland V, Shao Y, Perna NT, Plunkett G, Sofia HJ, Blattner FR. The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7 Nucleic Acids Research. 26: 4196-4204. PMID 9722640 DOI: 10.1093/nar/26.18.4196  0.68
1998 Perna NT, Mayhew GF, Pósfai G, Elliott S, Donnenberg MS, Kaper JB, Blattner FR. Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7 Infection and Immunity. 66: 3810-3817. PMID 9673266  0.68
1997 Allex CF, Baldwin SF, Shavlik JW, Blattner FR. Increasing consensus accuracy in DNA fragment assemblies by incorporating fluorescent trace representations Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 5: 3-14. PMID 9322009  0.68
1997 Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, et al. The complete genome sequence of Escherichia coli K-12 Science. 277: 1453-1462. PMID 9278503 DOI: 10.1126/science.277.5331.1453  0.68
1997 Pósfai G, Koob MD, Kirkpatrick HA, Blattner FR. Versatile insertion plasmids for targeted genome manipulations in bacteria: Isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome Journal of Bacteriology. 179: 4426-4428. PMID 9209066  0.68
1997 Hensel M, Shea JE, Bäumler AJ, Gleeson C, Blattner F, Holden DW. Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12 Journal of Bacteriology. 179: 1105-1111. PMID 9023191  0.68
1996 Allex CF, Baldwin SF, Shavlik JW, Blattner FR. Improving the quality of automatic DNA sequence assembly using fluorescent trace-data classifications Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 4: 3-14. PMID 8877499  0.68
1996 Koop BF, Richards JE, Durfee TD, Bansberg J, Wells J, Gilliam AC, Chen HL, Clausell A, Tucker PW, Blattner FR. Analysis and comparison of the mouse and human immunoglobulin heavy chain JH-Cμ-Cδ locus Molecular Phylogenetics and Evolution. 5: 33-49. PMID 8673297 DOI: 10.1006/mpev.1996.0005  0.68
1995 Lake EM, Jiang H, Blattner FR, Adler J. Analogue of aspartate and glutamate active at synapses are attractants for Escherichia coli Cellular and Molecular Neurobiology. 15: 283-288. PMID 8590457 DOI: 10.1007/BF02073334  0.68
1995 Burland V, Plunkett G, Sofia HJ, Daniels DL, Blattner FR. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes Nucleic Acids Research. 23: 2105-2119. PMID 7610040  0.68
1994 Sofia HJ, Burland V, Daniels DL, Plunkett G, Blattner FR. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes Nucleic Acids Research. 22: 2576-2586. PMID 8041620  0.68
1994 Chuang SE, Blattner FR. Ultrafast DNA recovery from agarose by centrifugation through a paper slurry Biotechniques. 17: 634+636. PMID 7833013  0.68
1994 Sukharev SI, Blount P, Martinac B, Blattner FR, Kung C. A large-conductance mechanosensitive channel in E. coli encoded by mscL alone. Nature. 368: 265-8. PMID 7511799 DOI: 10.1038/368265a0  0.68
1993 Chuang SE, Daniels DL, Blattner FR. Global regulation of gene expression in Escherichia coli Journal of Bacteriology. 175: 2026-2036. PMID 8458845  0.68
1993 Chuang SE, Blattner FR. Characterization of twenty-six new heat shock genes of Escherichia coli Journal of Bacteriology. 175: 5242-5252. PMID 8349564  0.68
1993 Plunkett G, Burland V, Daniels DL, Blattner FR. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes Nucleic Acids Research. 21: 3391-3398. PMID 8346018  0.68
1993 Burland V, Daniels DL, Plunkett G, Blattner FR. Genome sequencing on both strands: The Janus strategy Nucleic Acids Research. 21: 3385-3390. PMID 8346017  0.68
1993 Blattner FR, Burland V, Plunkett G, Sofia HJ, Daniels DL. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes Nucleic Acids Research. 21: 5408-5417. PMID 8265357  0.68
1993 Chuang SE, Burland V, Plunkett G, Daniels DL, Blattner FR. Sequence analysis of four new heat-shock genes constituting the hslTS/ibpAB and hslVU operons in Escherichia coli Gene. 134: 1-6. PMID 8244018 DOI: 10.1016/0378-1119(93)90167-2  0.68
1993 Burland V, Plunkett G, Daniels DL, Blattner FR. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication Genomics. 16: 551-561. PMID 7686882 DOI: 10.1006/geno.1993.1230  0.68
1992 Rimm DL, Horness D, Kucera J, Blattner FR. Construction of coliphage lambda charon vectors with BamH1 cloning sites. 1980 Biotechnology (Reading, Mass.). 24: 220-228. PMID 1422018  0.68
1992 Sawyer JR, Tucker PW, Blattner FR. Metal-binding chimeric antibodies expressed in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 89: 9754-9758. PMID 1409694 DOI: 10.1073/pnas.89.20.9754  0.68
1992 Das C, Kulkarni PV, Constantinescu A, Antich P, Blattner FR, Tucker PW. Recombinant antibody-metallothionein: Design and evaluation for radioimmunoimaging Proceedings of the National Academy of Sciences of the United States of America. 89: 9749-9753. PMID 1409693  0.68
1992 Daniels DL, Plunkett G, Burland V, Blattner FR. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes Science. 257: 771-778. PMID 1379743  0.68
1991 Sawyer JR, Blattner FR. Rapid detection of antigen binding by antibody fragments expressed in the periplasm of Escherichia coli Protein Engineering. 4: 947-953. PMID 1817258  0.68
1991 Olson CH, Blattner FR, Daniels DL. Simultaneous preparation of up to 768 single-stranded DNAs for use as templates in DNA sequencing Methods. 3: 27-32. DOI: 10.1016/S1046-2023(05)80160-4  0.68
1990 Daniels DL, Olson CH, Brumley R, Blattner FR. Field inversion gel electrophoresis applied to the rapid, multi-enzyme restriction mapping of phage lambda clones Nucleic Acids Research. 18: 1312. PMID 2138731 DOI: 10.1093/nar/18.5.1312  0.68
1990 White MB, Word CJ, Humphries CG, Blattner FR, Tucker PW. Immunoglobulin D switching can occur through homologous recombination in human B cells. Molecular and Cellular Biology. 10: 3690-9. PMID 2113175  0.68
1989 Patarca R, Singh RP, Durfee T, Freeman G, Blattner FR, Cantor H. Definition of T-cell specific DNA-binding factors that interact with a 3′-silencer in the CD4+ T-cell gene Rpt-1 Gene. 85: 461-469. PMID 2697644 DOI: 10.1016/0378-1119(89)90440-X  0.68
1989 Schnos M, Zahn K, Blattner FR, Inman RB. DNA looping induced by bacteriophage λ O protein: Implications for formation of higher order structures at the gl origin of replication Virology. 168: 370-377. PMID 2521755 DOI: 10.1016/0042-6822(89)90278-X  0.68
1989 Word CJ, White MB, Kuzlel WA, Shen AL, Blattner FR, Tucker PW. The human immunoglobulin Cµ-Cδ locus: Complete nucleotide sequence and structural analysis International Immunology. 1: 296-309. PMID 2518659 DOI: 10.1093/intimm/1.3.296  0.68
1989 Kuzlel WA, Word CJ, Yuan D, White MB, Mushlnski JF, Blattner FR, Tucker PW. The human immunoglobulin Cμ–Cd locus: Regulation of μ and d rna expression during b cell development International Immunology. 1: 310-319. PMID 2484885 DOI: 10.1093/intimm/1.3.310  0.68
1988 Humphries CG, Shen A, Kuziel WA, Capra JD, Blattner FR, Tucker PW. A new human immunoglobulin VH family preferentially rearranged in immature B-cell tumours. Nature. 331: 446-9. PMID 3123998 DOI: 10.1038/331446a0  0.68
1988 Daniels DL, Subbarao MN, Blattner FR, Lozeron HA. Q-mediated late gene transcription of bacteriophage lambda: RNA start point and RNase III processing sites in vivo. Virology. 167: 568-77. PMID 2849240  0.68
1988 Schnos M, Zahn K, Inman RB, Blattner FR. Initiation protein induced helix destabilization at the λ origin: A prepriming step in DNA replication Cell. 52: 385-395. PMID 2830983 DOI: 10.1016/S0092-8674(88)80031-X  0.68
1987 Daniels DL, Blattner FR. Mapping using gene encyclopaedias Nature. 325: 831-832. PMID 3547141  0.68
1987 Zahn K, Blattner FR. Direct evidence for DNA bending at the lambda replication origin Science. 236: 416-422. PMID 2951850  0.68
1986 Doggett PE, Blattner FR. Personal access to sequence databases on personal computers Nucleic Acids Research. 14: 611-619. DOI: 10.1093/nar/14.1.611  0.68
1982 Makin GJ, Szybalski W, Blattner FR. Asymmetric effects of deletions and substitutions on high negative interference in coliphage lambda. Genetics. 102: 299-317. PMID 6217104  0.68
1976 Fiandt M, Szybalski W, Blattner FR, Jaskunas SR, Lindahl L, Nomura M. Organization of ribosomal protein genes in Escherichia coli. I. Physical structure of DNA from transducing lambda phages carrying genes from the aroE-str region. Journal of Molecular Biology. 106: 817-35. PMID 789899  0.68
1974 Blattner FR, Fiandt M, Hass KK, Twose PA, Szybalski W. Deletions and insertions in the immunity region of coliphage lambda: revised measurement of the promoter-startpoint distance. Virology. 62: 458-71. PMID 4432374 DOI: 10.1016/0042-6822(74)90407-3  0.68
1972 Blattner FR, Dahlberg JE, Boettiger JK, Fiandt M, Szybalski W. Distance from a promoter mutation to an RNA synthesis startpoint on bacteriophage lambda DNA. Nature: New Biology. 237: 232-6. PMID 4504486  0.68
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