| Year |
Citation |
Score |
| 2024 |
Anastasakis DG, Apostolidi M, Garman KA, Polash AH, Umar MI, Meng Q, Scutenaire J, Jarvis JE, Wang X, Haase AD, Brownell I, Rinehart J, Hafner M. Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory role. Molecular Cell. PMID 39153475 DOI: 10.1016/j.molcel.2024.07.025 |
0.323 |
|
| 2024 |
Fan X, Chang T, Chen C, Hafner M, Wang Z. Analysis of RNA translation with a deep learning architecture provides new insight into translation control. Biorxiv : the Preprint Server For Biology. PMID 39005319 DOI: 10.1101/2023.07.08.548206 |
0.32 |
|
| 2024 |
Skeparnias I, Bou-Nader C, Anastasakis DG, Fan L, Wang YX, Hafner M, Zhang J. Structural basis of MALAT1 RNA maturation and mascRNA biogenesis. Nature Structural & Molecular Biology. PMID 38956168 DOI: 10.1038/s41594-024-01340-4 |
0.329 |
|
| 2024 |
Min KW, Jo MH, Song M, Lee JW, Shim MJ, Kim K, Park HB, Ha S, Mun H, Polash A, Hafner M, Cho JH, Kim D, Jeong JH, Ko S, et al. Mature microRNA-binding protein QKI promotes microRNA-mediated gene silencing. Rna Biology. 21: 1-15. PMID 38372062 DOI: 10.1080/15476286.2024.2314846 |
0.436 |
|
| 2023 |
Heindel AJ, Brulet JW, Wang X, Founds MW, Libby AH, Bai DL, Lemke MC, Leace DM, Harris TE, Hafner M, Hsu KL. Chemoproteomic capture of RNA binding activity in living cells. Nature Communications. 14: 6282. PMID 37805600 DOI: 10.1038/s41467-023-41844-z |
0.382 |
|
| 2023 |
Fallatah A, Anastasakis DG, Manzourolajdad A, Sharma P, Wang X, Jacob A, Alsharif S, Elgerbi A, Coulombe PA, Hafner M, Chung BM. Keratin 19 binds and regulates cytoplasmic HNRNPK mRNA targets in triple-negative breast cancer. Bmc Molecular and Cell Biology. 24: 26. PMID 37592256 DOI: 10.1186/s12860-023-00488-z |
0.339 |
|
| 2023 |
Muys BR, Shrestha RL, Anastasakis DG, Pongor L, Li XL, Grammatikakis I, Polash A, Chari R, Gorospe M, Harris CC, Aladjem MI, Basrai MA, Hafner M, Lal A. Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B. Cell Reports. 42: 112260. PMID 36924503 DOI: 10.1016/j.celrep.2023.112260 |
0.344 |
|
| 2023 |
Chen Y, Li Y, Dai RS, Savage JC, Shinde U, Klimek J, David LL, Young EA, Hafner M, Sears RC, Sun XX, Dai MS. The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing. Nucleic Acids Research. PMID 36912080 DOI: 10.1093/nar/gkad140 |
0.361 |
|
| 2022 |
Lee TA, Han H, Polash A, Cho SK, Lee JW, Ra EA, Lee E, Park A, Kang S, Choi JL, Kim JH, Lee JE, Min KW, Yang SW, Hafner M, et al. The nucleolus is the site for inflammatory RNA decay during infection. Nature Communications. 13: 5203. PMID 36057640 DOI: 10.1038/s41467-022-32856-2 |
0.317 |
|
| 2022 |
Danan C, Manickavel S, Hafner M. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites. Methods in Molecular Biology (Clifton, N.J.). 2404: 167-188. PMID 34694609 DOI: 10.1007/978-1-0716-1851-6_9 |
0.396 |
|
| 2021 |
Wan Y, Anastasakis DG, Rodriguez J, Palangat M, Gudla P, Zaki G, Tandon M, Pegoraro G, Chow CC, Hafner M, Larson DR. Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection. Cell. PMID 33979654 DOI: 10.1016/j.cell.2021.04.012 |
0.344 |
|
| 2021 |
Anastasakis DG, Jacob A, Konstantinidou P, Meguro K, Claypool D, Cekan P, Haase AD, Hafner M. A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol. Nucleic Acids Research. PMID 33503264 DOI: 10.1093/nar/gkab011 |
0.357 |
|
| 2020 |
Muys BR, Anastasakis DG, Claypool D, Pongor L, Li XL, Grammatikakis I, Liu M, Wang X, Prasanth KV, Aladjem MI, Lal A, Hafner M. The p53-induced RNA-binding protein ZMAT3 is a splicing regulator that inhibits the splicing of oncogenic CD44 variants in colorectal carcinoma. Genes & Development. PMID 33334821 DOI: 10.1101/gad.342634.120 |
0.356 |
|
| 2020 |
Foroushani AK, Chim B, Wong M, Rastegar A, Smith PT, Wang S, Barbian K, Martens C, Hafner M, Muljo SA. Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4. Proceedings of the National Academy of Sciences of the United States of America. PMID 33020268 DOI: 10.1073/pnas.2005237117 |
0.357 |
|
| 2020 |
Brown RS, Anastasakis DG, Hafner M, Kielian M. Multiple capsid protein binding sites mediate selective packaging of the alphavirus genomic RNA. Nature Communications. 11: 4693. PMID 32943634 DOI: 10.1038/S41467-020-18447-Z |
0.356 |
|
| 2020 |
Benhalevy D, Hafner M. Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide Scale. Methods in Molecular Biology (Clifton, N.J.). 2166: 283-305. PMID 32710416 DOI: 10.1007/978-1-0716-0712-1_17 |
0.469 |
|
| 2020 |
Anastasakis D, Benhalevy D, Hafner M. Proximity-CLIP and Expedited Non-Radioactive Library Preparation of Small RNA Footprints for Next-Generation Sequencing. Current Protocols in Molecular Biology. 131: e120. PMID 32438484 DOI: 10.1002/cpmb.120 |
0.36 |
|
| 2019 |
Elcheva IA, Wood T, Chiarolanzio K, Chim B, Wong M, Singh V, Gowda CP, Lu Q, Hafner M, Dovat S, Liu Z, Muljo SA, Spiegelman VS. RNA-binding protein IGF2BP1 maintains leukemia stem cell properties by regulating HOXB4, MYB, and ALDH1A1. Leukemia. PMID 31768017 DOI: 10.1038/S41375-019-0656-9 |
0.363 |
|
| 2019 |
Wang S, Chim B, Su Y, Khil P, Wong M, Wang X, Foroushani A, Smith PT, Liu X, Li R, Ganesan S, Kanellopoulou C, Hafner M, Muljo SA. Enhancement of LIN28B-induced hematopoietic reprogramming by IGF2BP3. Genes & Development. PMID 31221665 DOI: 10.1101/Gad.325100.119 |
0.397 |
|
| 2019 |
Sauer M, Juranek SA, Marks J, De Magis A, Kazemier HG, Hilbig D, Benhalevy D, Wang X, Hafner M, Paeschke K. DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions. Nature Communications. 10: 2421. PMID 31160600 DOI: 10.1038/S41467-019-10432-5 |
0.395 |
|
| 2019 |
Muys BR, Sousa JF, Plaça JR, Araújo LF, Sarshad AA, Anastasakis DG, Wang X, Li XL, de Molfetta GA, Ramão A, Lal A, Vidal DO, Hafner M, Silva WA. miR-450a acts as a tumor suppressor in ovarian cancer by regulating energy metabolism. Cancer Research. PMID 31101765 DOI: 10.1158/0008-5472.Can-19-0490 |
0.385 |
|
| 2019 |
Palangat M, Anastasakis DG, Fei DL, Lindblad KE, Bradley R, Hourigan CS, Hafner M, Larson DR. The splicing factor U2AF1 contributes to cancer progression through a noncanonical role in translation regulation. Genes & Development. PMID 30842218 DOI: 10.1101/Gad.319590.118 |
0.371 |
|
| 2018 |
Benhalevy D, Anastasakis DG, Hafner M. Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. Nature Methods. 15: 1074-1082. PMID 30478324 DOI: 10.1038/S41592-018-0220-Y |
0.485 |
|
| 2018 |
Gao QQ, Putzbach WE, Murmann AE, Chen S, Sarshad AA, Peter JM, Bartom ET, Hafner M, Peter ME. 6mer seed toxicity in tumor suppressive microRNAs. Nature Communications. 9: 4504. PMID 30374110 DOI: 10.1038/S41467-018-06526-1 |
0.471 |
|
| 2018 |
Putzbach W, Haluck-Kangas A, Gao QQ, Sarshad AA, Bartom ET, Stults A, Qadir AS, Hafner M, Peter ME. CD95/Fas ligand mRNA is toxic to cells. Elife. 7. PMID 30324908 DOI: 10.7554/Elife.38621 |
0.462 |
|
| 2018 |
Sarshad AA, Juan AH, Muler AIC, Anastasakis DG, Wang X, Genzor P, Feng X, Tsai PF, Sun HW, Haase AD, Sartorelli V, Hafner M. Argonaute-miRNA Complexes Silence Target mRNAs in the Nucleus of Mammalian Stem Cells. Molecular Cell. PMID 30146314 DOI: 10.1016/J.Molcel.2018.07.020 |
0.533 |
|
| 2018 |
Wang IX, Grunseich C, Fox J, Burdick J, Zhu Z, Ravazian N, Hafner M, Cheung VG. Human proteins that interact with RNA/DNA hybrids. Genome Research. PMID 30108179 DOI: 10.1101/Gr.237362.118 |
0.427 |
|
| 2018 |
Tsai PF, Dell'Orso S, Rodriguez J, Vivanco KO, Ko KD, Jiang K, Juan AH, Sarshad AA, Vian L, Tran M, Wangsa D, Wang AH, Perovanovic J, Anastasakis D, Ralston E, ... ... Hafner M, et al. A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans. Molecular Cell. 71: 129-141.e8. PMID 29979962 DOI: 10.1016/J.Molcel.2018.06.008 |
0.389 |
|
| 2018 |
Min KW, Zealy RW, Davila S, Fomin M, Cummings JC, Makowsky D, Mcdowell CH, Thigpen H, Hafner M, Kwon SH, Georgescu C, Wren JD, Yoon JH. Profiling of m6A RNA modifications identified an age-associated regulation of AGO2 mRNA stability. Aging Cell. e12753. PMID 29573145 DOI: 10.1111/Acel.12753 |
0.477 |
|
| 2017 |
Putzbach W, Gao QQ, Patel M, van Dongen S, Haluck-Kangas A, Sarshad AA, Bartom ET, Kim KA, Scholtens DM, Hafner M, Zhao JC, Murmann AE, Peter ME. Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism. Elife. 6. PMID 29063830 DOI: 10.7554/Elife.29702 |
0.393 |
|
| 2017 |
Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ. LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection. Elife. 6. PMID 28895529 DOI: 10.7554/Elife.28889 |
0.441 |
|
| 2017 |
Gogakos T, Brown M, Garzia A, Meyer C, Hafner M, Tuschl T. Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP. Cell Reports. 20: 1463-1475. PMID 28793268 DOI: 10.1016/J.Celrep.2017.07.029 |
0.598 |
|
| 2017 |
Benhalevy D, Gupta SK, Danan CH, Ghosal S, Sun HW, Kazemier HG, Paeschke K, Hafner M, Juranek SA. The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation. Cell Reports. 18: 2979-2990. PMID 28329689 DOI: 10.1016/J.Celrep.2017.02.080 |
0.438 |
|
| 2017 |
Yamaji M, Jishage M, Meyer C, Suryawanshi H, Der E, Yamaji M, Garzia A, Morozov P, Manickavel S, McFarland HL, Roeder RG, Hafner M, Tuschl T. DND1 maintains germline stem cells via recruitment of the CCR4-NOT complex to target mRNAs. Nature. PMID 28297718 DOI: 10.1038/Nature21690 |
0.626 |
|
| 2017 |
Benhalevy D, McFarland HL, Sarshad AA, Hafner M. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites. Methods (San Diego, Calif.). 118: 41-49. PMID 27871973 DOI: 10.1016/J.Ymeth.2016.11.009 |
0.489 |
|
| 2017 |
Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ. Author response: LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection Elife. DOI: 10.7554/Elife.28889.020 |
0.334 |
|
| 2016 |
Faraji F, Hu Y, Yang HH, Lee MP, Winkler GS, Hafner M, Hunter KW. Post-transcriptional Control of Tumor Cell Autonomous Metastatic Potential by CCR4-NOT Deadenylase CNOT7. Plos Genetics. 12: e1005820. PMID 26807845 DOI: 10.1371/Journal.Pgen.1005820 |
0.449 |
|
| 2016 |
Danan C, Manickavel S, Hafner M. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites. Methods in Molecular Biology (Clifton, N.J.). 1358: 153-73. PMID 26463383 DOI: 10.1007/978-1-4939-3067-8_10 |
0.493 |
|
| 2015 |
Arimbasseri AG, Blewett NH, Iben JR, Lamichhane TN, Cherkasova V, Hafner M, Maraia RJ. RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification. Plos Genetics. 11: e1005671. PMID 26720005 DOI: 10.1371/Journal.Pgen.1005671 |
0.364 |
|
| 2015 |
Hauptmann J, Schraivogel D, Bruckmann A, Manickavel S, Jakob L, Eichner N, Pfaff J, Urban M, Sprunck S, Hafner M, Tuschl T, Deutzmann R, Meister G. Biochemical isolation of Argonaute protein complexes by Ago-APP. Proceedings of the National Academy of Sciences of the United States of America. 112: 11841-5. PMID 26351695 DOI: 10.1073/Pnas.1506116112 |
0.634 |
|
| 2015 |
Yoon JH, Jo MH, White EJ, De S, Hafner M, Zucconi BE, Abdelmohsen K, Martindale JL, Yang X, Wood WH, Shin YM, Song JJ, Tuschl T, Becker KG, Wilson GM, et al. AUF1 promotes let-7b loading on Argonaute 2. Genes & Development. 29: 1599-604. PMID 26253535 DOI: 10.1101/Gad.263749.115 |
0.653 |
|
| 2015 |
Løvendorf MB, Mitsui H, Zibert JR, Røpke MA, Hafner M, Dyring-Andersen B, Bonefeld CM, Krueger JG, Skov L. Laser capture microdissection followed by next-generation sequencing identifies disease-related microRNAs in psoriatic skin that reflect systemic microRNA changes in psoriasis Experimental Dermatology. 24: 187-193. PMID 25431026 DOI: 10.1111/Exd.12604 |
0.465 |
|
| 2014 |
Lu YC, Chang SH, Hafner M, Li X, Tuschl T, Elemento O, Hla T. ELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages. Cell Reports. 9: 2330-43. PMID 25533351 DOI: 10.1016/J.Celrep.2014.11.030 |
0.665 |
|
| 2014 |
Yoon JH, De S, Srikantan S, Abdelmohsen K, Grammatikakis I, Kim J, Kim KM, Noh JH, White EJ, Martindale JL, Yang X, Kang MJ, Wood WH, Noren Hooten N, Evans MK, ... ... Hafner M, et al. PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity. Nature Communications. 5: 5248. PMID 25366541 DOI: 10.1038/Ncomms6248 |
0.661 |
|
| 2014 |
Gerstberger S, Hafner M, Tuschl T. A census of human RNA-binding proteins. Nature Reviews. Genetics. 15: 829-45. PMID 25365966 DOI: 10.1038/Nrg3813 |
0.649 |
|
| 2014 |
Gerstberger S, Hafner M, Ascano M, Tuschl T. Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease. Advances in Experimental Medicine and Biology. 825: 1-55. PMID 25201102 DOI: 10.1007/978-1-4939-1221-6_1 |
0.654 |
|
| 2014 |
Karaca E, Weitzer S, Pehlivan D, Shiraishi H, Gogakos T, Hanada T, Jhangiani SN, Wiszniewski W, Withers M, Campbell IM, Erdin S, Isikay S, Franco LM, Gonzaga-Jauregui C, Gambin T, ... ... Hafner M, et al. Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function. Cell. 157: 636-50. PMID 24766809 DOI: 10.1016/J.Cell.2014.02.058 |
0.52 |
|
| 2014 |
Wang X, Wang HK, Li Y, Hafner M, Banerjee NS, Tang S, Briskin D, Meyers C, Chow LT, Xie X, Tuschl T, Zheng ZM. microRNAs are biomarkers of oncogenic human papillomavirus infections. Proceedings of the National Academy of Sciences of the United States of America. 111: 4262-7. PMID 24591631 DOI: 10.1073/Pnas.1401430111 |
0.584 |
|
| 2014 |
Spitzer J, Hafner M, Landthaler M, Ascano M, Farazi T, Wardle G, Nusbaum J, Khorshid M, Burger L, Zavolan M, Tuschl T. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins. Methods in Enzymology. 539: 113-61. PMID 24581442 DOI: 10.1016/B978-0-12-420120-0.00008-6 |
0.639 |
|
| 2014 |
Mukherjee N, Jacobs NC, Hafner M, Kennington EA, Nusbaum JD, Tuschl T, Blackshear PJ, Ohler U. Global target mRNA specification and regulation by the RNA-binding protein ZFP36. Genome Biology. 15: R12. PMID 24401661 DOI: 10.1186/Gb-2014-15-1-R12 |
0.662 |
|
| 2014 |
Hoell JI, Hafner M, Landthaler M, Ascano M, Farazi TA, Wardle G, Nusbaum J, Cekan P, Khorshid M, Burger L, Zavolan M, Tuschl T. Transcriptome-Wide Identification of Protein Binding Sites on RNA by PAR-CLIP (Photoactivatable-Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation) Handbook of Rna Biochemistry: Second, Completely Revised and Enlarged Edition. 2: 877-898. DOI: 10.1002/9783527647064.ch39 |
0.353 |
|
| 2013 |
Gerstberger S, Hafner M, Tuschl T. Learning the language of post-transcriptional gene regulation. Genome Biology. 14: 130. PMID 23998708 DOI: 10.1186/Gb-2013-14-8-130 |
0.624 |
|
| 2013 |
Brown M, Suryawanshi H, Hafner M, Farazi TA, Tuschl T. Mammalian miRNA curation through next-generation sequencing. Frontiers in Genetics. 4: 145. PMID 23935604 DOI: 10.3389/Fgene.2013.00145 |
0.661 |
|
| 2013 |
Renwick N, Cekan P, Masry PA, McGeary SE, Miller JB, Hafner M, Li Z, Mihailovic A, Morozov P, Brown M, Gogakos T, Mobin MB, Snorrason EL, Feilotter HE, Zhang X, et al. Multicolor microRNA FISH effectively differentiates tumor types. The Journal of Clinical Investigation. 123: 2694-702. PMID 23728175 DOI: 10.1172/Jci68760 |
0.626 |
|
| 2013 |
Teplova M, Hafner M, Teplov D, Essig K, Tuschl T, Patel DJ. Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites. Genes & Development. 27: 928-40. PMID 23630077 DOI: 10.1101/Gad.216531.113 |
0.659 |
|
| 2013 |
Hafner M, Max KE, Bandaru P, Morozov P, Gerstberger S, Brown M, Molina H, Tuschl T. Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition. Rna (New York, N.Y.). 19: 613-26. PMID 23481595 DOI: 10.1261/Rna.036491.112 |
0.698 |
|
| 2013 |
Trompeter HI, Dreesen J, Hermann E, Iwaniuk KM, Hafner M, Renwick N, Tuschl T, Wernet P. MicroRNAs miR-26a, miR-26b, and miR-29b accelerate osteogenic differentiation of unrestricted somatic stem cells from human cord blood. Bmc Genomics. 14: 111. PMID 23418963 DOI: 10.1186/1471-2164-14-111 |
0.57 |
|
| 2012 |
Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X. Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression. Bmc Genomics. 13: 727. PMID 23268654 DOI: 10.1186/1471-2164-13-727 |
0.645 |
|
| 2012 |
Ascano M, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T. FMRP targets distinct mRNA sequence elements to regulate protein expression. Nature. 492: 382-6. PMID 23235829 DOI: 10.1038/Nature11737 |
0.645 |
|
| 2012 |
Hafner M, Lianoglou S, Tuschl T, Betel D. Genome-wide identification of miRNA targets by PAR-CLIP. Methods (San Diego, Calif.). 58: 94-105. PMID 22926237 DOI: 10.1016/J.Ymeth.2012.08.006 |
0.665 |
|
| 2012 |
Hafner M, Renwick N, Farazi TA, Mihailovi? A, Pena JT, Tuschl T. Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing. Methods (San Diego, Calif.). 58: 164-70. PMID 22885844 DOI: 10.1016/J.Ymeth.2012.07.030 |
0.681 |
|
| 2012 |
Scheibe M, Butter F, Hafner M, Tuschl T, Mann M. Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions. Nucleic Acids Research. 40: 9897-902. PMID 22885304 DOI: 10.1093/Nar/Gks746 |
0.627 |
|
| 2012 |
Farazi TA, Brown M, Morozov P, Ten Hoeve JJ, Ben-Dov IZ, Hovestadt V, Hafner M, Renwick N, Mihailovi? A, Wessels LF, Tuschl T. Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing. Methods (San Diego, Calif.). 58: 171-87. PMID 22836126 DOI: 10.1016/J.Ymeth.2012.07.020 |
0.681 |
|
| 2012 |
Italiano A, Thomas R, Breen M, Zhang L, Crago AM, Singer S, Khanin R, Maki RG, Mihailovic A, Hafner M, Tuschl T, Antonescu CR. The miR-17-92 cluster and its target THBS1 are differentially expressed in angiosarcomas dependent on MYC amplification. Genes, Chromosomes & Cancer. 51: 569-78. PMID 22383169 DOI: 10.1002/Gcc.21943 |
0.565 |
|
| 2012 |
Skalsky RL, Corcoran DL, Gottwein E, Frank CL, Kang D, Hafner M, Nusbaum JD, Feederle R, Delecluse HJ, Luftig MA, Tuschl T, Ohler U, Cullen BR. The viral and cellular microRNA targetome in lymphoblastoid cell lines. Plos Pathogens. 8: e1002484. PMID 22291592 DOI: 10.1371/Journal.Ppat.1002484 |
0.632 |
|
| 2012 |
Ascano M, Hafner M, Cekan P, Gerstberger S, Tuschl T. Identification of RNA-protein interaction networks using PAR-CLIP. Wiley Interdisciplinary Reviews. Rna. 3: 159-77. PMID 22213601 DOI: 10.1002/Wrna.1103 |
0.644 |
|
| 2012 |
Skalsky RL, Corcoran DL, Gottwein E, Frank CL, Hafner M, Nusbaum JD, Feederle R, Delecluse H, Luftig M, Tuschl T, Ohler U, Cullen BR. Analysis of the miRNA targetome in EBV-infected B cells Infectious Agents and Cancer. 7. DOI: 10.1186/1750-9378-7-S1-O2 |
0.644 |
|
| 2011 |
Gottwein E, Corcoran DL, Mukherjee N, Skalsky RL, Hafner M, Nusbaum JD, Shamulailatpam P, Love CL, Dave SS, Tuschl T, Ohler U, Cullen BR. Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. Cell Host & Microbe. 10: 515-26. PMID 22100165 DOI: 10.1016/J.Chom.2011.09.012 |
0.64 |
|
| 2011 |
Hoell JI, Larsson E, Runge S, Nusbaum JD, Duggimpudi S, Farazi TA, Hafner M, Borkhardt A, Sander C, Tuschl T. RNA targets of wild-type and mutant FET family proteins. Nature Structural & Molecular Biology. 18: 1428-31. PMID 22081015 DOI: 10.1038/Nsmb.2163 |
0.636 |
|
| 2011 |
Hafner M, Ascano M, Tuschl T. New insights in the mechanism of microRNA-mediated target repression. Nature Structural & Molecular Biology. 18: 1181-2. PMID 22056803 DOI: 10.1038/Nsmb.2170 |
0.593 |
|
| 2011 |
Lipchina I, Elkabetz Y, Hafner M, Sheridan R, Mihailovic A, Tuschl T, Sander C, Studer L, Betel D. Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. Genes & Development. 25: 2173-86. PMID 22012620 DOI: 10.1101/Gad.17221311 |
0.588 |
|
| 2011 |
Hafner M, Renwick N, Brown M, Mihailovi? A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T. RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries. Rna (New York, N.Y.). 17: 1697-712. PMID 21775473 DOI: 10.1261/Rna.2799511 |
0.659 |
|
| 2011 |
Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M, Tuschl T, Ohler U, Keene JD. Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability. Molecular Cell. 43: 327-39. PMID 21723170 DOI: 10.1016/J.Molcel.2011.06.007 |
0.674 |
|
| 2011 |
Ugras S, Brill E, Jacobsen A, Hafner M, Socci ND, Decarolis PL, Khanin R, O'Connor R, Mihailovic A, Taylor BS, Sheridan R, Gimble JM, Viale A, Crago A, Antonescu CR, et al. Small RNA sequencing and functional characterization reveals MicroRNA-143 tumor suppressor activity in liposarcoma. Cancer Research. 71: 5659-69. PMID 21693658 DOI: 10.1158/0008-5472.Can-11-0890 |
0.633 |
|
| 2011 |
Farazi TA, Horlings HM, Ten Hoeve JJ, Mihailovic A, Halfwerk H, Morozov P, Brown M, Hafner M, Reyal F, van Kouwenhove M, Kreike B, Sie D, Hovestadt V, Wessels LF, van de Vijver MJ, et al. MicroRNA sequence and expression analysis in breast tumors by deep sequencing. Cancer Research. 71: 4443-53. PMID 21586611 DOI: 10.1158/0008-5472.Can-11-0608 |
0.621 |
|
| 2011 |
Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ. Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. The Plant Journal : For Cell and Molecular Biology. 67: 292-304. PMID 21457371 DOI: 10.1111/J.1365-313X.2011.04594.X |
0.693 |
|
| 2011 |
Bissels U, Wild S, Tomiuk S, Hafner M, Scheel H, Mihailovic A, Choi YH, Tuschl T, Bosio A. Combined characterization of microRNA and mRNA profiles delineates early differentiation pathways of CD133+ and CD34+ hematopoietic stem and progenitor cells. Stem Cells (Dayton, Ohio). 29: 847-57. PMID 21394831 DOI: 10.1002/Stem.627 |
0.581 |
|
| 2011 |
Trompeter HI, Abbad H, Iwaniuk KM, Hafner M, Renwick N, Tuschl T, Schira J, Müller HW, Wernet P. MicroRNAs MiR-17, MiR-20a, and MiR-106b act in concert to modulate E2F activity on cell cycle arrest during neuronal lineage differentiation of USSC. Plos One. 6: e16138. PMID 21283765 DOI: 10.1371/Journal.Pone.0016138 |
0.581 |
|
| 2010 |
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins. Journal of Visualized Experiments : Jove. PMID 20644507 DOI: 10.3791/2034 |
0.658 |
|
| 2010 |
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell. 141: 129-41. PMID 20371350 DOI: 10.1016/J.Cell.2010.03.009 |
0.638 |
|
| 2010 |
Angeles CV, Hafner M, Socci ND, DeCarolis P, Tuschl T, Singer S. Abstract 3100: The RNA-binding protein insulin-like growth factor 2 mRNA-binding protein 3 is oncogenic in liposarcoma Cancer Research. 70: 3100-3100. DOI: 10.1158/1538-7445.Am10-3100 |
0.589 |
|
| 2009 |
Bissels U, Wild S, Tomiuk S, Holste A, Hafner M, Tuschl T, Bosio A. Absolute quantification of microRNAs by using a universal reference. Rna (New York, N.Y.). 15: 2375-84. PMID 19861428 DOI: 10.1261/Rna.1754109 |
0.629 |
|
| 2009 |
Pena JT, Sohn-Lee C, Rouhanifard SH, Ludwig J, Hafner M, Mihailovic A, Lim C, Holoch D, Berninger P, Zavolan M, Tuschl T. miRNA in situ hybridization in formaldehyde and EDC-fixed tissues. Nature Methods. 6: 139-41. PMID 19137005 DOI: 10.1038/Nmeth.1294 |
0.613 |
|
| 2009 |
Yi R, Pasolli HA, Landthaler M, Hafner M, Ojo T, Sheridan R, Sander C, O'Carroll D, Stoffel M, Tuschl T, Fuchs E. DGCR8-dependent microRNA biogenesis is essential for skin development. Proceedings of the National Academy of Sciences of the United States of America. 106: 498-502. PMID 19114655 DOI: 10.1073/Pnas.0810766105 |
0.574 |
|
| 2009 |
MAJ, Landthaler M, Khorshid M, Burger L, Hafner M, Zavolan M, Tuschl T. Transcriptome-wide Identification of the mRNA target sites of the Fragile-X Mental Retardation Proteins The Faseb Journal. 23. DOI: 10.1096/Fasebj.23.1_Supplement.666.2 |
0.526 |
|
| 2008 |
Landthaler M, Gaidatzis D, Rothballer A, Chen PY, Soll SJ, Dinic L, Ojo T, Hafner M, Zavolan M, Tuschl T. Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs. Rna (New York, N.Y.). 14: 2580-96. PMID 18978028 DOI: 10.1261/Rna.1351608 |
0.672 |
|
| 2008 |
Hafner M, Vianini E, Albertoni B, Marchetti L, Grüne I, Gloeckner C, Famulok M. Displacement of protein-bound aptamers with small molecules screened by fluorescence polarization. Nature Protocols. 3: 579-87. PMID 18388939 DOI: 10.1038/Nprot.2008.15 |
0.554 |
|
| 2008 |
Hafner M, Landgraf P, Ludwig J, Rice A, Ojo T, Lin C, Holoch D, Lim C, Tuschl T. Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. Methods (San Diego, Calif.). 44: 3-12. PMID 18158127 DOI: 10.1016/J.Ymeth.2007.09.009 |
0.655 |
|
| 2006 |
Hafner M, Schmitz A, Grüne I, Srivatsan SG, Paul B, Kolanus W, Quast T, Kremmer E, Bauer I, Famulok M. Inhibition of cytohesins by SecinH3 leads to hepatic insulin resistance. Nature. 444: 941-4. PMID 17167487 DOI: 10.1038/Nature05415 |
0.656 |
|
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