Dahlia R. Weiss - Publications

Heptares Therapeutics 
Computational Structural Biology

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Weiss DR, Bortolato A, Tehan B, Mason JS. GPCR-Bench: A Benchmarking Set and Practitioners' Guide for G Protein-Coupled Receptor Docking. Journal of Chemical Information and Modeling. PMID 26958710 DOI: 10.1021/acs.jcim.5b00660  1
2015 Bortolato A, Deflorian F, Weiss DR, Mason JS. Decoding the Role of Water Dynamics in Ligand-Protein Unbinding: CRF1R as a Test Case. Journal of Chemical Information and Modeling. 55: 1857-66. PMID 26335976 DOI: 10.1021/acs.jcim.5b00440  1
2015 Bennett KA, Doré AS, Christopher JA, Weiss DR, Marshall FH. Structures of mGluRs shed light on the challenges of drug development of allosteric modulators. Current Opinion in Pharmacology. 20: 1-7. PMID 25462286 DOI: 10.1016/j.coph.2014.09.022  1
2014 Silva DA, Weiss DR, Pardo Avila F, Da LT, Levitt M, Wang D, Huang X. Millisecond dynamics of RNA polymerase II translocation at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 7665-70. PMID 24753580 DOI: 10.1073/pnas.1315751111  1
2014 Coleman RG, Sterling T, Weiss DR. SAMPL4 & DOCK3.7: Lessons for automated docking procedures Journal of Computer-Aided Molecular Design. 28: 201-209. PMID 24515818 DOI: 10.1007/s10822-014-9722-6  1
2014 Weiss DR, Koehl P. Morphing methods to visualize coarse-grained protein dynamics Methods in Molecular Biology. 1084: 271-282. PMID 24061927 DOI: 10.1007/978-1-62703-658-0-15  1
2013 Kruse AC, Weiss DR, Rossi M, Hu J, Hu K, Eitel K, Gmeiner P, Wess J, Kobilka BK, Shoichet BK. Muscarinic receptors as model targets and antitargets for structure-based ligand discovery. Molecular Pharmacology. 84: 528-40. PMID 23887926 DOI: 10.1124/mol.113.087551  1
2013 Weiss DR, Ahn S, Sassano MF, Kleist A, Zhu X, Strachan R, Roth BL, Lefkowitz RJ, Shoichet BK. Conformation guides molecular efficacy in docking screens of activated β-2 adrenergic G protein coupled receptor. Acs Chemical Biology. 8: 1018-26. PMID 23485065 DOI: 10.1021/cb400103f  1
2012 Mysinger MM, Weiss DR, Ziarek JJ, Gravel S, Doak AK, Karpiak J, Heveker N, Shoichet BK, Volkman BF. Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4. Proceedings of the National Academy of Sciences of the United States of America. 109: 5517-22. PMID 22431600 DOI: 10.1073/pnas.1120431109  1
2011 Bray JK, Weiss DR, Levitt M. Optimized torsion-angle normal modes reproduce conformational changes more accurately than cartesian modes. Biophysical Journal. 101: 2966-9. PMID 22208195 DOI: 10.1016/j.bpj.2011.10.054  1
2011 Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R. Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure (London, England : 1993). 19: 1108-26. PMID 21827947 DOI: 10.1016/j.str.2011.05.012  1
2010 Huang X, Wang D, Weiss DR, Bushnell DA, Kornberg RD, Levitt M. RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proceedings of the National Academy of Sciences of the United States of America. 107: 15745-50. PMID 20798057 DOI: 10.1073/pnas.1009898107  1
2009 Weiss DR, Levitt M. Can morphing methods predict intermediate structures? Journal of Molecular Biology. 385: 665-74. PMID 18996395 DOI: 10.1016/j.jmb.2008.10.064  1
2008 Weiss DR, Raschke TM, Levitt M. How hydrophobic buckminsterfullerene affects surrounding water structure. The Journal of Physical Chemistry. B. 112: 2981-90. PMID 18275178 DOI: 10.1021/jp076416h  1
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