| Year |
Citation |
Score |
| 2024 |
Tournayre J, Polonais V, Wawrzyniak I, Akossi RF, Parisot N, Lerat E, Delbac F, Souvignet P, Reichstadt M, Peyretaillade E. MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation. International Journal of Molecular Sciences. 25. PMID 38255958 DOI: 10.3390/ijms25020880 |
0.534 |
|
| 2022 |
Lerat E. Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements. Frontiers in Genetics. 13: 891194. PMID 35646069 DOI: 10.3389/fgene.2022.891194 |
0.426 |
|
| 2021 |
Correa M, Lerat E, Birmelé E, Samson F, Bouillon B, Normand K, Rizzon C. Erratum to: The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality. Genome Biology and Evolution. 13. PMID 34508264 DOI: 10.1093/gbe/evab175 |
0.36 |
|
| 2021 |
Sellis D, Guérin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, et al. Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes. Plos Biology. 19: e3001309. PMID 34324490 DOI: 10.1371/journal.pbio.3001309 |
0.594 |
|
| 2021 |
Correa M, Lerat E, Birmelé E, Samson F, Bouillon B, Normand K, Rizzon C. The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality. Genome Biology and Evolution. 13. PMID 33973013 DOI: 10.1093/gbe/evab062 |
0.544 |
|
| 2020 |
Lallemand T, Leduc M, Landès C, Rizzon C, Lerat E. An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. Genes. 11. PMID 32899740 DOI: 10.3390/Genes11091046 |
0.577 |
|
| 2019 |
Lerat E, Casacuberta J, Chaparro C, Vieira C. On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses. Genes. 10. PMID 30935103 DOI: 10.3390/Genes10040258 |
0.568 |
|
| 2019 |
Lannes R, Rizzon C, Lerat E. Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes? Genes. 10. PMID 30917603 DOI: 10.3390/Genes10030249 |
0.56 |
|
| 2018 |
Lerat E, Goubert C, Guirao-Rico S, Merenciano M, Dufour AB, Vieira C, González J. Population specific dynamics and selection patterns of transposable element insertions in European natural populations. Molecular Ecology. PMID 30506554 DOI: 10.1111/Mec.14963 |
0.444 |
|
| 2017 |
Bargues N, Lerat E. Evolutionary history of LTR-retrotransposons among 20 Drosophila species. Mobile Dna. 8: 7. PMID 28465726 DOI: 10.1186/S13100-017-0090-3 |
0.508 |
|
| 2017 |
Lerat E, Fablet M, Modolo L, Lopez-Maestre H, Vieira C. TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Research. 45: e17. PMID 28204592 DOI: 10.1093/Nar/Gkw953 |
0.566 |
|
| 2016 |
Moulin S, Seux N, Chrétien S, Guyeux C, Lerat E. Simulation-based estimation of branching models for LTR retrotransposons. Bioinformatics (Oxford, England). PMID 28011770 DOI: 10.1093/Bioinformatics/Btw622 |
0.431 |
|
| 2016 |
Lerat E, Fablet M, Modolo L, Lopez-Maestre H, Vieira C. TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Research. PMID 27924026 DOI: 10.1093/nar/gkw953 |
0.501 |
|
| 2016 |
Grégoire L, Haudry A, Lerat E. The transposable element environment of human genes is associated with histone and expression changes in cancer. Bmc Genomics. 17: 588. PMID 27506777 DOI: 10.1186/S12864-016-2970-1 |
0.543 |
|
| 2015 |
Belkorchia A, Gasc C, Polonais V, Parisot N, Gallois N, Ribière C, Lerat E, Gaspin C, Pombert JF, Peyret P, Peyretaillade E. The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. Plos One. 10: e0139075. PMID 26421846 DOI: 10.1371/Journal.Pone.0139075 |
0.582 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.409 |
|
| 2015 |
Peyretaillade E, Boucher D, Parisot N, Gasc C, Butler R, Pombert JF, Lerat E, Peyret P. Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems. Heredity. 114: 441-9. PMID 25182222 DOI: 10.1038/hdy.2014.78 |
0.393 |
|
| 2014 |
Parisot N, Pelin A, Gasc C, Polonais V, Belkorchia A, Panek J, El Alaoui H, Biron DG, Brasset E, Vaury C, Peyret P, Corradi N, Peyretaillade É, Lerat E. Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans. Genome Biology and Evolution. 6: 2289-300. PMID 25172905 DOI: 10.1093/Gbe/Evu178 |
0.587 |
|
| 2014 |
Carnelossi EAG, Lerat E, Henri H, Martinez S, Carareto CMA, Vieira C. Specific activation of an I-like element in Drosophila interspecific hybrids Genome Biology and Evolution. 6: 1806-1817. PMID 24966182 DOI: 10.1093/Gbe/Evu141 |
0.418 |
|
| 2014 |
Blanc S, Ruggiero F, Birot AM, Acloque H, Décimo D, Lerat E, Ohlmann T, Samarut J, Mey A. Subcellular localization of ENS-1/ERNI in chick embryonic stem cells Plos One. 9. PMID 24643087 DOI: 10.1371/Journal.Pone.0092039 |
0.325 |
|
| 2014 |
Modolo L, Picard F, Lerat E. A new genome-wide method to track horizontally transferred sequences: Application to Drosophila Genome Biology and Evolution. 6: 416-432. PMID 24497602 DOI: 10.1093/Gbe/Evu026 |
0.457 |
|
| 2014 |
Bailly-Bechet M, Haudry A, Lerat E. "One code to find them all": A perl tool to conveniently parse RepeatMasker output files Mobile Dna. 5. DOI: 10.1186/1759-8753-5-13 |
0.513 |
|
| 2012 |
Vieira C, Fablet M, Lerat E, Boulesteix M, Rebollo R, Burlet N, Akkouche A, Hubert B, Mortada H, Biémont C. A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans Journal of Environmental Radioactivity. 113: 83-86. PMID 22659421 DOI: 10.1016/J.Jenvrad.2012.04.001 |
0.57 |
|
| 2011 |
Lerat E. The French way of life of mobile DNA: Meeting report on the 17 French Congress on transposable elements (Lyon, July 4-6 2011). Mobile Genetic Elements. 1: 89-91. PMID 22016853 DOI: 10.4161/Mge.1.2.17455 |
0.382 |
|
| 2011 |
Lerat E, Burlet N, Biémont C, Vieira C. Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes Gene. 473: 100-109. PMID 21156200 DOI: 10.1016/J.Gene.2010.11.009 |
0.433 |
|
| 2010 |
Mortada H, Vieira C, Lerat E. Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species Journal of Molecular Evolution. 71: 180-191. PMID 20798934 DOI: 10.1007/S00239-010-9376-5 |
0.534 |
|
| 2010 |
Lerat E. Identifying repeats and transposable elements in sequenced genomes: How to find your way through the dense forest of programs Heredity. 104: 520-533. PMID 19935826 DOI: 10.1038/Hdy.2009.165 |
0.483 |
|
| 2009 |
Granzotto A, Lopes FR, Lerat E, Vieira C, Carareto CM. The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. Bmc Evolutionary Biology. 9: 174. PMID 19624823 DOI: 10.1186/1471-2148-9-174 |
0.557 |
|
| 2009 |
Deloger M, Cavalli FMG, Lerat E, Biémont C, Sagot MF, Vieira C. Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster Gene. 439: 55-62. PMID 19332112 DOI: 10.1016/J.Gene.2009.03.015 |
0.603 |
|
| 2009 |
Fablet M, Lerat E, Rebollo R, Horard B, Burlet N, Martinez S, Milie Brasset E, Gilson E, Vaury C, Vieira C. Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila Faseb Journal. 23: 1482-1489. PMID 19141532 DOI: 10.1096/Fj.08-123513 |
0.538 |
|
| 2008 |
Rebollo R, Lerat E, Kleine LL, Biémont C, Vieira C. Losing helena: The extinction of a drosophila line-like element Bmc Genomics. 9. PMID 18377637 DOI: 10.1186/1471-2164-9-149 |
0.479 |
|
| 2007 |
Lerat E, Birot AM, Samarut J, Mey A. Maintenance in the chicken genome of the retroviral-like cENS gene family specifically expressed in early embryos Journal of Molecular Evolution. 65: 215-227. PMID 17671751 DOI: 10.1007/S00239-007-9001-4 |
0.552 |
|
| 2007 |
Lerat E, Sémon M. Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues Gene. 396: 303-311. PMID 17490832 DOI: 10.1016/J.Gene.2007.04.002 |
0.503 |
|
| 2006 |
Daubin V, Lerat E. Evolution of the core of genes Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 123-130. DOI: 10.1017/CBO9780511754913.008 |
0.338 |
|
| 2005 |
Lerat E, Ochman H. Recognizing the pseudogenes in bacterial genomes. Nucleic Acids Research. 33: 3125-32. PMID 15933207 DOI: 10.1093/Nar/Gki631 |
0.592 |
|
| 2005 |
Ochman H, Lerat E, Daubin V. Examining bacterial species under the specter of gene transfer and exchange. Proceedings of the National Academy of Sciences of the United States of America. 102: 6595-9. PMID 15851673 DOI: 10.1073/Pnas.0502035102 |
0.567 |
|
| 2005 |
Lerat E, Daubin V, Ochman H, Moran NA. Evolutionary origins of genomic repertoires in bacteria. Plos Biology. 3: e130. PMID 15799709 DOI: 10.1371/Journal.Pbio.0030130 |
0.683 |
|
| 2005 |
Ochman H, Daubin V, Lerat E. A bunch of fun-guys: the whole-genome view of yeast evolution. Trends in Genetics : Tig. 21: 1-3. PMID 15680504 DOI: 10.1016/J.Tig.2004.11.006 |
0.585 |
|
| 2004 |
Edvardsen RB, Lerat E, Maeland AD, Flåt M, Tewari R, Jensen MF, Lehrach H, Reinhardt R, Seo HC, Chourrout D. Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica. Journal of Molecular Evolution. 59: 448-57. PMID 15638456 DOI: 10.1007/S00239-004-2636-5 |
0.55 |
|
| 2004 |
Lerat E, Ochman H. Psi-Phi: exploring the outer limits of bacterial pseudogenes. Genome Research. 14: 2273-8. PMID 15479949 DOI: 10.1101/Gr.2925604 |
0.621 |
|
| 2004 |
Lerat E, Moran NA. The evolutionary history of quorum-sensing systems in bacteria. Molecular Biology and Evolution. 21: 903-13. PMID 15014168 DOI: 10.1093/Molbev/Msh097 |
0.611 |
|
| 2004 |
Earnest-DeYoung JV, Lerat E, Moret BME. Reversing gene erosion - Reconstructing ancestral bacterial genomes from gene-content and order data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3240: 1-13. |
0.463 |
|
| 2003 |
Lerat E, Daubin V, Moran NA. From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria. Plos Biology. 1: E19. PMID 12975657 DOI: 10.1371/Journal.Pbio.0000019 |
0.683 |
|
| 2003 |
Daubin V, Lerat E, Perrière G. The source of laterally transferred genes in bacterial genomes. Genome Biology. 4: R57. PMID 12952536 DOI: 10.1186/Gb-2003-4-9-R57 |
0.607 |
|
| 2003 |
Lerat E, Rizzon C, Biémont C. Sequence divergence within transposable element families in the Drosophila melanogaster genome Genome Research. 13: 1889-1896. PMID 12869581 DOI: 10.1101/Gr.827603 |
0.561 |
|
| 2002 |
Lerat E, Capy P, Biémont C. The relative abundance of dinucleotides in transposable elements in five species. Molecular Biology and Evolution. 19: 964-7. PMID 12032253 DOI: 10.1093/Oxfordjournals.Molbev.A004154 |
0.539 |
|
| 2002 |
Lerat E, Capy P, Biémont C. Codon usage by transposable elements and their host genes in five species. Journal of Molecular Evolution. 54: 625-37. PMID 11965435 DOI: 10.1007/S00239-001-0059-0 |
0.584 |
|
| 1999 |
Lerat E, Brunet F, Bazin C, Capy P. Is the evolution of transposable elements modular? Genetica. 107: 15-25. PMID 10952194 DOI: 10.1023/A:1004026821539 |
0.407 |
|
| 1999 |
Lerat E, Capy P. Retrotransposons and retroviruses: analysis of the envelope gene. Molecular Biology and Evolution. 16: 1198-207. PMID 10486975 DOI: 10.1093/Oxfordjournals.Molbev.A026210 |
0.507 |
|
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