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Jason D. Slinker - Related publications

University of Texas at Dallas, Richardson, TX, United States 
DNA bioelectronics, organic optoelectronics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chen JY, Yang LY, Liu ZJ, Wei QX, Zhang Y, Wu B, Zhong GX, Fu LX, Lin XH, Weng XH, Xu XW. DNA Nanosieve-Based Regenerative Electrochemical Biosensor Utilizing Nucleic Acid Flexibility for Accurate Allele Typing in Clinical Samples. Acs Sensors. PMID 33657808 DOI: 10.1021/acssensors.0c02720   
2021 Cai R, Zhang S, Chen L, Li M, Zhang Y, Zhou N. Self-Assembled DNA Nanoflowers Triggered by a DNA Walker for Highly Sensitive Electrochemical Detection of . Acs Applied Materials & Interfaces. PMID 33470807 DOI: 10.1021/acsami.0c22062   
2021 Vishnubhotla R, Montgomery CB, Steffens KL, Semancik S. Conformational Changes of Immobilized Polythymine due to External Stressors Studied with Temperature-Controlled Electrochemical Microdevices. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33595321 DOI: 10.1021/acs.langmuir.0c03219   
2021 Chen K, Gularek F, Liu B, Weinhold E, Keyser UF. Electrical DNA Sequence Mapping Using Oligodeoxynucleotide Labels and Nanopores. Acs Nano. PMID 33478224 DOI: 10.1021/acsnano.0c07947   
2021 Fabbrizi MR, Hughes JR, Parsons JL. The Enzyme-Modified Neutral Comet (EMNC) Assay for Complex DNA Damage Detection. Methods and Protocols. 4. PMID 33669320 DOI: 10.3390/mps4010014   
2021 Chandrasekaran AR. Nuclease resistance of DNA nanostructures. Nature Reviews. Chemistry. 1-15. PMID 33585701 DOI: 10.1038/s41570-021-00251-y   
2021 Weinhold E, Chakraborty B. DNA modification and visualization on an origami-based enzyme nano-factory. Nanoscale. PMID 33471009 DOI: 10.1039/d0nr07618j   
2021 Ruan Q, Zou F, Wang Y, Zhang Y, Xu X, Lin X, Tian T, Zhang H, Zhou L, Zhu Z, Yang C. Sensitive, Rapid, and Automated Detection of DNA Methylation Based on Digital Microfluidics. Acs Applied Materials & Interfaces. PMID 33576594 DOI: 10.1021/acsami.0c21995   
2021 Vaidyanathan S, Weerakoon-Ratnayake KM, Uba FI, Hu B, Kaufman D, Choi J, Park S, Soper SA. Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules. Lab On a Chip. PMID 33651049 DOI: 10.1039/d0lc01038c   
2021 Dai L, Liu P, Hu X, Zhao X, Shao G, Tian Y. DNA origami: an outstanding platform for functions in nanophotonics and cancer therapy. The Analyst. PMID 33595553 DOI: 10.1039/d0an02160a   
2021 Lu K, Liu C, Liu Y, Luo A, Chen J, Lei Z, Kong J, Xiao X, Zhang S, Wang YZ, Ma L, Dou SX, Wang PY, Li M, Li G, et al. Curaxin-Induced DNA Topology Alterations Trigger the Distinct Binding Response of CTCF and FACT at the Single-Molecule Level. Biochemistry. PMID 33570402 DOI: 10.1021/acs.biochem.1c00014   
2021 Li F, Yu W, Zhang J, Dong Y, Ding X, Ruan X, Gu Z, Yang D. Spatiotemporally programmable cascade hybridization of hairpin DNA in polymeric nanoframework for precise siRNA delivery. Nature Communications. 12: 1138. PMID 33602916 DOI: 10.1038/s41467-021-21442-7   
2021 Medan J, Sleebs BE, Lackovic K, Watson KG, Evison BJ, Phillips DR, Cutts SM. Development of an automated assay for accelerated in vitro detection of DNA adduct-inducing and crosslinking agents. Bioorganic & Medicinal Chemistry Letters. 127813. PMID 33486050 DOI: 10.1016/j.bmcl.2021.127813   
2021 Kumari N, Raghavan SC. G-quadruplex DNA structures and their relevance in radioprotection. Biochimica Et Biophysica Acta. General Subjects. 1865: 129857. PMID 33508382 DOI: 10.1016/j.bbagen.2021.129857   
2021 Kitchner E, Chavez J, Ceresa L, Bus MM, Budowle B, Gryczynski Z. A novel approach for visualization and localization of small amounts of DNA on swabs to improve DNA collection and recovery process. The Analyst. PMID 33393553 DOI: 10.1039/d0an02043e   
2021 Hnízda A, Tesina P, Nguyen TB, Kukačka Z, Kater L, Chaplin A, Beckmann R, Ascher DB, Novák P, Blundell TL. SAP domain forms a flexible part of DNA aperture in Ku70/80. The Febs Journal. PMID 33511782 DOI: 10.1111/febs.15732   
2021 Burgess JT, Cheong CM, Suraweera A, Sobanski T, Beard S, Dave K, Rose M, Boucher D, Croft LV, Adams MN, O'Byrne K, Richard DJ, Bolderson E. Barrier-to-autointegration-factor (Banf1) modulates DNA double-strand break repair pathway choice via regulation of DNA-dependent kinase (DNA-PK) activity. Nucleic Acids Research. PMID 33660778 DOI: 10.1093/nar/gkab110   
2021 Iaccarino N, Cheng M, Qiu D, Pagano B, Amato J, Di Porzio A, Zhou J, Randazzo A, Mergny JL. Effects of sequence and base composition on the CD and TDS profiles of i-DNA. Angewandte Chemie (International Ed. in English). PMID 33617090 DOI: 10.1002/anie.202016822   
2021 Yang W, Radha B, Choudhary A, You Y, Mettela G, Geim AK, Aksimentiev A, Keerthi A, Dekker C. Translocation of DNA through Ultrathin Nanoslits. Advanced Materials (Deerfield Beach, Fla.). e2007682. PMID 33522015 DOI: 10.1002/adma.202007682   
2021 Jiang J, Du X. DNA-targeted formation and catalytic reactions of DNAzymes for label-free ratiometric electrochemiluminescence biosensing. Talanta. 225: 121964. PMID 33592718 DOI: 10.1016/j.talanta.2020.121964   
2021 McKie SJ, Neuman KC, Maxwell A. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000286. PMID 33480441 DOI: 10.1002/bies.202000286   
2021 Zhang M, Yang C, Tasan I, Zhao H. Expanding the Potential of Mammalian Genome Engineering Targeted DNA Integration. Acs Synthetic Biology. PMID 33596056 DOI: 10.1021/acssynbio.0c00576   
2021 Rattu P, Belzunces B, Haynes T, Skylaris CK, Khalid S. Translocation of flexible and tensioned ssDNA through designed hydrophobic nanopores with two constrictions. Nanoscale. PMID 33434242 DOI: 10.1039/d0nr04890a   
2021 Petralia S, Forte G, Aiello M, Nocito G, Conoci S. Photothermal-triggered system for oligonucleotides delivery from cationic gold nanorods surface: A molecular dynamic investigation. Colloids and Surfaces. B, Biointerfaces. 201: 111654. PMID 33657517 DOI: 10.1016/j.colsurfb.2021.111654   
2021 Cheng M, Qiu D, Tamon L, Ištvánková E, Víšková P, Amrane S, Guédin A, Chen J, Lacroix L, Ju H, Trantírek L, Sahakyan AB, Zhou J, Mergny JL. Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data. Angewandte Chemie (International Ed. in English). PMID 33605024 DOI: 10.1002/anie.202016801   
2021 Matange K, Tuck JM, Keung AJ. DNA stability: a central design consideration for DNA data storage systems. Nature Communications. 12: 1358. PMID 33649304 DOI: 10.1038/s41467-021-21587-5   
2021 Mi Y, Zhao J, Chu H, Li Z, Yu M, Li L. Upconversion Luminescence-Controlled DNA Computation for Spatiotemporally Resolved, Multiplexed Molecular Imaging. Analytical Chemistry. PMID 33464832 DOI: 10.1021/acs.analchem.0c04531   
2021 Wu JT, Liu R, Chen YR, Zheng XQ, Wu ZS. The hierarchical assembly of a multi-level DNA ring-based nanostructure in a precise order and its application for screening tumor cells. Biomaterials Science. PMID 33533777 DOI: 10.1039/d0bm00085j   
2021 Li D, Yang E, Luo Z, Xie Q, Duan Y. An enzyme-mediated universal fluorescent biosensor template for pathogen detection based on a three-dimensional DNA walker and catalyzed hairpin assembly. Nanoscale. PMID 33471006 DOI: 10.1039/d0nr07593k   
2021 McLaughlin P, Hopkins C, Springer E, Prinz M. Non-destructive DNA recovery from handwritten documents using a dry vacuum technique. Journal of Forensic Sciences. PMID 33656180 DOI: 10.1111/1556-4029.14696   
2021 Forrest NT, Vilcapoma J, Alejos K, Halvorsen K, Chandrasekaran AR. Orthogonal Control of DNA Nanoswitches with Mixed Physical and Biochemical Cues. Biochemistry. PMID 33464826 DOI: 10.1021/acs.biochem.0c00952   
2021 Hao Y, Li Y, Song L, Deng Z. Flash Synthesis of Spherical Nucleic Acids with Record DNA Density. Journal of the American Chemical Society. PMID 33599474 DOI: 10.1021/jacs.1c00568   
2021 Xu W, Lin Y, Zhao K, Li H, Tian Y, Ngatia JN, Ma Y, Sahu SK, Guo H, Guo X, Xu YC, Liu H, Kristiansen K, Lan T, Zhou X. An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data. Ecology and Evolution. 11: 390-401. PMID 33437437 DOI: 10.1002/ece3.7056   
2021 Li Y, Yuan J. Role of deubiquitinating enzymes in DNA double-strand break repair. Journal of Zhejiang University. Science. B. 22: 63-72. PMID 33448188 DOI: 10.1631/jzus.B2000309   
2021 Hao N, Sullivan AE, Shearwin KE, Dodd IB. The loopometer: a quantitative in vivo assay for DNA-looping proteins. Nucleic Acids Research. PMID 33511418 DOI: 10.1093/nar/gkaa1284   
2021 Cameron G, Yardimci H. Studying chromosome biology with single-molecule resolution in Xenopus laevis egg extracts. Essays in Biochemistry. PMID 33438722 DOI: 10.1042/EBC20200026   
2021 Cai Q, Li H, Cao W, Guifen Jie. Photoinduced-electron transfer coupled with DNA cross-chain displacement multiple amplification for fluorescence biosensing of MicroRNA. Analytica Chimica Acta. 1148: 238169. PMID 33516380 DOI: 10.1016/j.aca.2020.12.044   
2021 Kim SH, Kim H, Jeong H, Yoon TY. Encoding Multiple Virtual Signals in DNA Barcodes with Single-Molecule FRET. Nano Letters. PMID 33586985 DOI: 10.1021/acs.nanolett.0c04502   
2021 Sharma RK, Agrawal I, Dai L, Doyle P, Garaj S. DNA Knot Malleability in Single-Digit Nanopores. Nano Letters. PMID 33661654 DOI: 10.1021/acs.nanolett.0c05142   
2021 Shi K, Moeller NH, Banerjee S, McCann JL, Carpenter MA, Yin L, Moorthy R, Orellana K, Harki DA, Harris RS, Aihara H. Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658373 DOI: 10.1073/pnas.2021120118   
2021 Wang M, Ngo V, Wang W. Deciphering the genetic code of DNA methylation. Briefings in Bioinformatics. PMID 33432324 DOI: 10.1093/bib/bbaa424   
2021 Güllülü Ö, Hehlgans S, Mayer BE, Gößner I, Petraki C, Hoffmann M, Dombrowsky MJ, Kunzmann P, Hamacher K, Strebhardt K, Fokas E, Rödel C, Münch C, Rödel F. A spatial and functional interaction of a heterotetramer Survivin-DNA-PKcs complex in DNA damage response. Cancer Research. PMID 33408118 DOI: 10.1158/0008-5472.CAN-20-2931   
2021 Xavier C, Eduardoff M, Bertoglio B, Amory C, Berger C, Casas-Vargas A, Pallua J, Parson W. Evaluation of DNA Extraction Methods Developed for Forensic and Ancient DNA Applications Using Bone Samples of Different Age. Genes. 12. PMID 33499220 DOI: 10.3390/genes12020146   
2021 Xu J, Wang X, Zhang X, Yao L, Qin P, Lu Y, Chen Y, Zhang Y, Yan Y, Chen W. Periodically programmed building and collapse of DNA networks enables an ultrahigh signal amplification effect for ultrasensitive nucleic acids analysis. Analytica Chimica Acta. 1150: 338221. PMID 33583542 DOI: 10.1016/j.aca.2021.338221   
2021 Zhang Z, Yu S, Zuo H. DNA Ring-Opening Polymerization Driven by Base Stacking. Chembiochem : a European Journal of Chemical Biology. PMID 33404185 DOI: 10.1002/cbic.202000776   
2021 Luo T, Fan S, Liu Y, Song J. Information processing based on DNA toehold-mediated strand displacement (TMSD) reaction. Nanoscale. PMID 33475669 DOI: 10.1039/d0nr07865d   
2021 Cao B, Zhang X, Wu J, Wang B, Zhang Q, Wei X. Minimum free energy coding for DNA storage. Ieee Transactions On Nanobioscience. PMID 33534710 DOI: 10.1109/TNB.2021.3056351   
2021 Wang D, Yu L, Huang CM, Arya G, Chang S, Ke Y. Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units. Journal of the American Chemical Society. PMID 33529009 DOI: 10.1021/jacs.0c10576   
2021 Li G, Deng L, Huang N, Sun F. The Biological Roles of lncRNAs and Future Prospects in Clinical Application. Diseases (Basel, Switzerland). 9. PMID 33450825 DOI: 10.3390/diseases9010008   
2021 Choi WL, Mok YG, Huh JH. Application of 5-Methylcytosine DNA Glycosylase to the Quantitative Analysis of DNA Methylation. International Journal of Molecular Sciences. 22. PMID 33499041 DOI: 10.3390/ijms22031072