| Year |
Citation |
Score |
| 2024 |
Zhang Y, Yu Z, Wong KC, Li X. Unraveling Spatial Domain Characterization in Spatially Resolved Transcriptomics with Robust Graph Contrastive Clustering. Bioinformatics (Oxford, England). 40. PMID 39012523 DOI: 10.1093/bioinformatics/btae451 |
0.534 |
|
| 2024 |
Liu L, Xiong Y, Zheng Z, Huang L, Song J, Lin Q, Tang B, Wong KC. AutoCancer as an automated multimodal framework for early cancer detection. Iscience. 27: 110183. PMID 38989460 DOI: 10.1016/j.isci.2024.110183 |
0.583 |
|
| 2024 |
Chen N, Yu J, Zhe L, Wang F, Li X, Wong KC. TP-LMMSG: a peptide prediction graph neural network incorporating flexible amino acid property representation. Briefings in Bioinformatics. 25. PMID 38920345 DOI: 10.1093/bib/bbae308 |
0.529 |
|
| 2024 |
Chen X, Lin J, Wang Y, Zhang W, Xie W, Zheng Z, Wong KC. HE2Gene: Image-to-RNA translation via multi-task learning for spatial transcriptomics data. Bioinformatics (Oxford, England). PMID 38837395 DOI: 10.1093/bioinformatics/btae343 |
0.793 |
|
| 2024 |
Zhang B, Hou Z, Yang Y, Wong KC, Zhu H, Li X. SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues. Communications Biology. 7: 679. PMID 38830995 DOI: 10.1038/s42003-024-06332-0 |
0.605 |
|
| 2024 |
Meng L, Chen X, Cheng K, Chen N, Zheng Z, Wang F, Sun H, Wong KC. TransPTM: a transformer-based model for non-histone acetylation site prediction. Briefings in Bioinformatics. 25. PMID 38725156 DOI: 10.1093/bib/bbae219 |
0.688 |
|
| 2024 |
Xie W, Yu J, Huang L, For LS, Zheng Z, Chen X, Wang Y, Liu Z, Peng C, Wong KC. DeepSeq2Drug: An expandable ensemble end-to-end anti-viral drug repurposing benchmark framework by multi-modal embeddings and transfer learning. Computers in Biology and Medicine. 175: 108487. PMID 38653064 DOI: 10.1016/j.compbiomed.2024.108487 |
0.691 |
|
| 2024 |
Wang X, Wang Y, Ma Z, Wong KC, Li X. Exhaustive Exploitation of Nature-Inspired Computation for Cancer Screening in an Ensemble Manner. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 38578856 DOI: 10.1109/TCBB.2024.3385402 |
0.665 |
|
| 2024 |
Chen N, Yu J, Liu Z, Meng L, Li X, Wong KC. Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation. Nucleic Acids Research. PMID 38572749 DOI: 10.1093/nar/gkae210 |
0.618 |
|
| 2024 |
Huang L, Xu T, Yu Y, Zhao P, Chen X, Han J, Xie Z, Li H, Zhong W, Wong KC, Zhang H. A dual diffusion model enables 3D molecule generation and lead optimization based on target pockets. Nature Communications. 15: 2657. PMID 38531837 DOI: 10.1038/s41467-024-46569-1 |
0.685 |
|
| 2024 |
Wang Y, Chen X, Zheng Z, Huang L, Xie W, Wang F, Zhang Z, Wong KC. scGREAT: Transformer-based deep-language model for gene regulatory network inference from single-cell transcriptomics. Iscience. 27: 109352. PMID 38510148 DOI: 10.1016/j.isci.2024.109352 |
0.805 |
|
| 2024 |
Su Y, Yu Z, Yang Y, Wong KC, Li X. Distribution-Agnostic Deep Learning Enables Accurate Single-Cell Data Recovery and Transcriptional Regulation Interpretation. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2307280. PMID 38380499 DOI: 10.1002/advs.202307280 |
0.63 |
|
| 2023 |
Liu Z, Wong HM, Chen X, Lin J, Zhang S, Yan S, Wang F, Li X, Wong KC. MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm. Computers in Biology and Medicine. 168: 107753. PMID 38039889 DOI: 10.1016/j.compbiomed.2023.107753 |
0.773 |
|
| 2023 |
Xie W, Chen X, Zheng Z, Wang F, Zhu X, Lin Q, Sun Y, Wong KC. LncRNA-Top: Controlled deep learning approaches for lncRNA gene regulatory relationship annotations across different platforms. Iscience. 26: 108197. PMID 37965148 DOI: 10.1016/j.isci.2023.108197 |
0.775 |
|
| 2023 |
Sun P, Fan S, Li S, Zhao Y, Lu C, Wong KC, Li X. Automated exploitation of deep learning for cancer patient stratification across multiple types. Bioinformatics (Oxford, England). 39. PMID 37934154 DOI: 10.1093/bioinformatics/btad654 |
0.583 |
|
| 2023 |
Zhu H, Yang Y, Wang Y, Wang F, Huang Y, Chang Y, Wong KC, Li X. Dynamic characterization and interpretation for protein-RNA interactions across diverse cellular conditions using HDRNet. Nature Communications. 14: 6824. PMID 37884495 DOI: 10.1038/s41467-023-42547-1 |
0.601 |
|
| 2023 |
Wang F, Alinejad-Rokny H, Lin J, Gao T, Chen X, Zheng Z, Meng L, Li X, Wong KC. A Lightweight Framework For Chromatin Loop Detection at the Single-Cell Level. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2303502. PMID 37816141 DOI: 10.1002/advs.202303502 |
0.796 |
|
| 2023 |
Toseef M, Olayemi Petinrin O, Wang F, Rahaman S, Liu Z, Li X, Wong KC. Deep transfer learning for clinical decision-making based on high-throughput data: comprehensive survey with benchmark results. Briefings in Bioinformatics. 24. PMID 37455245 DOI: 10.1093/bib/bbad254 |
0.587 |
|
| 2023 |
Fan Y, Wang Y, Wang F, Huang L, Yang Y, Wong KC, Li X. Reliable Identification and Interpretation of Single-Cell Molecular Heterogeneity and Transcriptional Regulation using Dynamic Ensemble Pruning. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2205442. PMID 37290050 DOI: 10.1002/advs.202205442 |
0.643 |
|
| 2023 |
Petinrin OO, Saeed F, Toseef M, Liu Z, Basurra S, Muyide IO, Li X, Lin Q, Wong KC. Machine learning in metastatic cancer research: Potentials, possibilities, and prospects. Computational and Structural Biotechnology Journal. 21: 2454-2470. PMID 37077177 DOI: 10.1016/j.csbj.2023.03.046 |
0.719 |
|
| 2023 |
Zheng Z, Chen J, Chen X, Huang L, Xie W, Lin Q, Li X, Wong KC. Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2204113. PMID 36762572 DOI: 10.1002/advs.202204113 |
0.786 |
|
| 2023 |
Zhang S, Li X, Lin J, Lin Q, Wong KC. Review of Single-cell RNA-seq Data Clustering for Cell Type Identification and Characterization. Rna (New York, N.Y.). PMID 36737104 DOI: 10.1261/rna.078965.121 |
0.787 |
|
| 2023 |
Wang Y, Yu Z, Li S, Bian C, Liang Y, Wong KC, Li X. scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Bioinformatics (Oxford, England). 39. PMID 36734596 DOI: 10.1093/bioinformatics/btad075 |
0.646 |
|
| 2023 |
Yu Z, Su Y, Lu Y, Yang Y, Wang F, Zhang S, Chang Y, Wong KC, Li X. Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA. Nature Communications. 14: 400. PMID 36697410 DOI: 10.1038/s41467-023-36134-7 |
0.781 |
|
| 2023 |
Hou Z, Yang Y, Ma Z, Wong KC, Li X. Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. Communications Biology. 6: 73. PMID 36653447 DOI: 10.1038/s42003-023-04462-5 |
0.605 |
|
| 2022 |
Wang Y, Hou Z, Yang Y, Wong KC, Li X. Genome-wide identification and characterization of DNA enhancers with a stacked multivariate fusion framework. Plos Computational Biology. 18: e1010779. PMID 36520922 DOI: 10.1371/journal.pcbi.1010779 |
0.673 |
|
| 2022 |
Wang F, Gao T, Lin J, Zheng Z, Huang L, Toseef M, Li X, Wong KC. GILoop: Robust chromatin loop calling across multiple sequencing depths on Hi-C data. Iscience. 25: 105535. PMID 36444296 DOI: 10.1016/j.isci.2022.105535 |
0.794 |
|
| 2022 |
Huang L, Lin J, Liu R, Zheng Z, Meng L, Chen X, Li X, Wong KC. CoaDTI: multi-modal co-attention based framework for drug-target interaction annotation. Briefings in Bioinformatics. PMID 36274236 DOI: 10.1093/bib/bbac446 |
0.769 |
|
| 2022 |
Su Y, Zhu H, Wong KC, Chang Y, Li X. Hyperspectral Image Denoising via Weighted Multidirectional Low-Rank Tensor Recovery. Ieee Transactions On Cybernetics. PMID 36251897 DOI: 10.1109/TCYB.2022.3208095 |
0.567 |
|
| 2022 |
Su Y, Wang F, Zhang S, Liang Y, Wong KC, Li X. scWMC: Weighted Matrix Completion-based Imputation of scRNA-seq Data via Prior Subspace Information. Bioinformatics (Oxford, England). PMID 35984287 DOI: 10.1093/bioinformatics/btac570 |
0.745 |
|
| 2022 |
Meng L, Chan WS, Huang L, Liu L, Chen X, Zhang W, Wang F, Cheng K, Sun H, Wong KC. Mini-review: Recent advances in post-translational modification site prediction based on deep learning. Computational and Structural Biotechnology Journal. 20: 3522-3532. PMID 35860402 DOI: 10.1016/j.csbj.2022.06.045 |
0.694 |
|
| 2022 |
Bian C, Wang X, Su Y, Wang Y, Wong KC, Li X. scEFSC: Accurate single-cell RNA-seq data analysis via ensemble consensus clustering based on multiple feature selections. Computational and Structural Biotechnology Journal. 20: 2181-2197. PMID 35615016 DOI: 10.1016/j.csbj.2022.04.023 |
0.65 |
|
| 2022 |
Xie W, Zheng Z, Zhang W, Huang L, Lin Q, Wong KC. SRG-vote: Predicting miRNA-gene relationships via embedding and LSTM ensemble. Ieee Journal of Biomedical and Health Informatics. PMID 35471879 DOI: 10.1109/JBHI.2022.3169542 |
0.653 |
|
| 2022 |
Li S, Yang Y, Wang X, Li J, Yu J, Li X, Wong KC. Colorectal cancer subtype identification from differential gene expression levels using minimalist deep learning. Biodata Mining. 15: 12. PMID 35461302 DOI: 10.1186/s13040-022-00295-w |
0.638 |
|
| 2022 |
Lu Y, Yu Z, Wang Y, Ma Z, Wong KC, Li X. GMHCC: High-throughput Analysis of Biomolecular Data using Graph-based Multiple Hierarchical Consensus Clustering. Bioinformatics (Oxford, England). PMID 35451457 DOI: 10.1093/bioinformatics/btac290 |
0.623 |
|
| 2022 |
Zheng Z, Xie W, Chen X, Wang F, Huang L, Li X, Lin Q, Wong KC. Subclass-specific Prognosis and Treatment Efficacy Inference in Head and Neck Squamous Carcinoma. Ieee Journal of Biomedical and Health Informatics. PMID 35439152 DOI: 10.1109/JBHI.2022.3168289 |
0.779 |
|
| 2022 |
Chen X, Zhu Z, Zhang W, Wang Y, Wang F, Yang J, Wong KC. Human disease prediction from microbiome data by multiple feature fusion and deep learning. Iscience. 25: 104081. PMID 35372808 DOI: 10.1016/j.isci.2022.104081 |
0.696 |
|
| 2022 |
Toseef M, Li X, Wong KC. Reducing healthcare disparities using multiple multiethnic data distributions with fine-tuning of transfer learning. Briefings in Bioinformatics. PMID 35323862 DOI: 10.1093/bib/bbac078 |
0.614 |
|
| 2022 |
Yang Y, Hou Z, Wang Y, Ma H, Sun P, Ma Z, Wong KC, Li X. HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network. Briefings in Bioinformatics. PMID 35189638 DOI: 10.1093/bib/bbac027 |
0.661 |
|
| 2021 |
Huang L, Lin J, Li X, Song L, Zheng Z, Wong KC. EGFI: drug-drug interaction extraction and generation with fusion of enriched entity and sentence information. Briefings in Bioinformatics. PMID 34791012 DOI: 10.1093/bib/bbab451 |
0.778 |
|
| 2021 |
Wang Y, Yang Y, Ma Z, Wong KC, Li X. EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network. Bioinformatics (Oxford, England). PMID 34694393 DOI: 10.1093/bioinformatics/btab739 |
0.622 |
|
| 2021 |
Li X, Li S, Huang L, Zhang S, Wong KC. High-throughput single-cell RNA-seq data imputation and characterization with surrogate-assisted automated deep learning. Briefings in Bioinformatics. PMID 34553763 DOI: 10.1093/bib/bbab368 |
0.792 |
|
| 2021 |
Lin J, Huang L, Chen X, Zhang S, Wong KC. DeepMotifSyn: a deep learning approach to synthesize heterodimeric DNA motifs. Briefings in Bioinformatics. PMID 34524404 DOI: 10.1093/bib/bbab334 |
0.801 |
|
| 2021 |
Petinrin OO, Li X, Wong KC. Particle Swarm Optimized Gaussian Process Classifier for Treatment Discontinuation Prediction in Multicohort Metastatic Castration-Resistant Prostate Cancer Patients. Ieee Journal of Biomedical and Health Informatics. PMID 34379600 DOI: 10.1109/JBHI.2021.3103989 |
0.584 |
|
| 2021 |
Hou Z, Yang Y, Li H, Wong KC, Li X. iDeepSubMito: identification of protein submitochondrial localization with deep learning. Briefings in Bioinformatics. PMID 34337657 DOI: 10.1093/bib/bbab288 |
0.626 |
|
| 2021 |
Dong M, Tang C, Ji J, Lin Q, Wong KC. Transmission trend of the COVID-19 pandemic predicted by dendritic neural regression. Applied Soft Computing. 111: 107683. PMID 34248448 DOI: 10.1016/j.asoc.2021.107683 |
0.619 |
|
| 2021 |
Liu L, Chen X, Petinrin OO, Zhang W, Rahaman S, Tang ZR, Wong KC. Machine Learning Protocols in Early Cancer Detection Based on Liquid Biopsy: A Survey. Life (Basel, Switzerland). 11. PMID 34209249 DOI: 10.3390/life11070638 |
0.694 |
|
| 2021 |
Chen X, Liu L, Zhang W, Yang J, Wong KC. Human host status inference from temporal microbiome changes via recurrent neural networks. Briefings in Bioinformatics. PMID 34151933 DOI: 10.1093/bib/bbab223 |
0.704 |
|
| 2021 |
Wang Y, Li X, Wong KC, Chang Y, Yang S. Evolutionary Multiobjective Clustering Algorithms With Ensemble for Patient Stratification. Ieee Transactions On Cybernetics. PMID 33961576 DOI: 10.1109/TCYB.2021.3069434 |
0.619 |
|
| 2021 |
Zhang W, Chen X, Wong KC. Noninvasive early diagnosis of intestinal diseases based on artificial intelligence in genomics and microbiome. Journal of Gastroenterology and Hepatology. 36: 823-831. PMID 33880763 DOI: 10.1111/jgh.15500 |
0.694 |
|
| 2021 |
Yu Z, Bian C, Liu G, Zhang S, Wong KC, Li X. Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing. Briefings in Bioinformatics. PMID 33855366 DOI: 10.1093/bib/bbab125 |
0.787 |
|
| 2021 |
Liu L, Chen X, Wong KC. Early Cancer Detection from Genome-wide Cell-free DNA Fragmentation via Shuffled Frog Leaping Algorithm and Support Vector Machine. Bioinformatics (Oxford, England). PMID 33837381 DOI: 10.1093/bioinformatics/btab236 |
0.688 |
|
| 2021 |
Li X, Zhang S, Wong KC. Deep embedded clustering with multiple objectives on scRNA-seq data. Briefings in Bioinformatics. PMID 33822877 DOI: 10.1093/bib/bbab090 |
0.782 |
|
| 2021 |
Chen X, Wong KC. Epistasis Detection Based on Epi-GTBN. Methods in Molecular Biology (Clifton, N.J.). 2212: 325-335. PMID 33733365 DOI: 10.1007/978-1-0716-0947-7_20 |
0.702 |
|
| 2021 |
Chen J, Wong KC. Analyzing High-Order Epistasis from Genotype-Phenotype Maps Using 'Epistasis' Package. Methods in Molecular Biology (Clifton, N.J.). 2212: 265-275. PMID 33733361 DOI: 10.1007/978-1-0716-0947-7_16 |
0.45 |
|
| 2021 |
Rahaman S, Li X, Yu J, Wong KC. CancerEMC: frontline non-invasive cancer screening from circulating protein biomarkers and mutations in cell-free DNA. Bioinformatics (Oxford, England). PMID 33515231 DOI: 10.1093/bioinformatics/btab044 |
0.558 |
|
| 2021 |
Yang Y, Li S, Wang Y, Ma Z, Wong KC, Li X. Identification of haploinsufficient genes from epigenomic data using deep forest. Briefings in Bioinformatics. PMID 33454736 DOI: 10.1093/bib/bbaa393 |
0.619 |
|
| 2020 |
Yang Y, Hou Z, Ma Z, Li X, Wong KC. iCircRBP-DHN: identification of circRNA-RBP interaction sites using deep hierarchical network. Briefings in Bioinformatics. PMID 33126261 DOI: 10.1093/bib/bbaa274 |
0.617 |
|
| 2020 |
Li X, Li S, Wang Y, Zhang S, Wong KC. Identification of pan-cancer Ras pathway activation with deep learning. Briefings in Bioinformatics. PMID 33126245 DOI: 10.1093/bib/bbaa258 |
0.753 |
|
| 2020 |
Chen J, Wong KC. RNCE: network integration with reciprocal neighbors contextual encoding for multi-modal drug community study on cancer targets. Briefings in Bioinformatics. PMID 32577712 DOI: 10.1093/bib/bbaa118 |
0.464 |
|
| 2020 |
Liu S, Lin Q, Wong KC, Coello CAC, Li J, Ming Z, Zhang J. A Self-Guided Reference Vector Strategy for Many-Objective Optimization. Ieee Transactions On Cybernetics. PMID 32396116 DOI: 10.1109/Tcyb.2020.2971638 |
0.594 |
|
| 2020 |
Zhang S, Li X, Lin Q, Lin J, Wong KC. Uncovering the key dimensions of high-throughput biomolecular data using deep learning. Nucleic Acids Research. PMID 32232416 DOI: 10.1093/Nar/Gkaa191 |
0.806 |
|
| 2020 |
Chen J, Hou J, Wong KC. Categorical Matrix Completion with Active Learning for High-throughput Screening. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32203025 DOI: 10.1109/Tcbb.2020.2982142 |
0.535 |
|
| 2020 |
Wang Y, Ma Z, Wong KC, Li X. Evolving Multiobjective Cancer Subtype Diagnosis from Cancer Gene Expression Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32086219 DOI: 10.1109/Tcbb.2020.2974953 |
0.648 |
|
| 2020 |
Li X, Zhang S, Wong KC. Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32031947 DOI: 10.1109/Tcbb.2020.2971993 |
0.779 |
|
| 2020 |
Li X, Zhang S, Wong KC. Multiobjective Genome-Wide RNA-Binding Event Identification From CLIP-Seq Data. Ieee Transactions On Cybernetics. PMID 31940583 DOI: 10.1109/Tcyb.2019.2960515 |
0.778 |
|
| 2020 |
Wang Y, Ma Z, Wong K, Li X. Nature-inspired multiobjective patient stratification from cancer gene expression data Information Sciences. 526: 245-262. DOI: 10.1016/J.Ins.2020.03.095 |
0.613 |
|
| 2019 |
Zhang S, Li X, Lin Q, Wong KC. Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements. Ieee Transactions On Cybernetics. PMID 31751263 DOI: 10.1109/Tcyb.2019.2951402 |
0.809 |
|
| 2019 |
Yan S, Wong KC. Context awareness and embedding for biomedical event extraction. Bioinformatics (Oxford, England). PMID 31392318 DOI: 10.1093/Bioinformatics/Btz607 |
0.752 |
|
| 2019 |
Wong KC, Chen J, Zhang J, Lin J, Yan S, Zhang S, Li X, Liang C, Peng C, Lin Q, Kwong S, Yu J. Early Cancer Detection from Multianalyte Blood Test Results. Iscience. 15: 332-341. PMID 31103852 DOI: 10.1016/J.Isci.2019.04.035 |
0.756 |
|
| 2019 |
Wang Y, Liu B, Ma Z, Wong KC, Li X. Nature-Inspired Multiobjective Cancer Subtype Diagnosis. Ieee Journal of Translational Engineering in Health and Medicine. 7: 4300112. PMID 30915261 DOI: 10.1109/Jtehm.2019.2891746 |
0.663 |
|
| 2019 |
Li X, Wong KC. Single-Cell RNA Sequencing Data Interpretation by Evolutionary Multiobjective Clustering. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30908236 DOI: 10.1109/Tcbb.2019.2906601 |
0.658 |
|
| 2019 |
Yan S, Wong KC. GESgnExt: Gene Expression Signature Extraction and Meta-analysis on Gene Expression Omnibus. Ieee Journal of Biomedical and Health Informatics. PMID 30714937 DOI: 10.1109/Jbhi.2019.2896144 |
0.774 |
|
| 2019 |
Peng C, Duarte CM, Costa DP, Guinet C, Harcourt RG, Hindell MA, McMahon CR, Muelbert M, Thums M, Wong K, Zhang X. Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species Applied Sciences. 9: 2935. DOI: 10.3390/App9142935 |
0.306 |
|
| 2019 |
Wong K, Zhang J, Yan S, Li X, Lin Q, Kwong S, Liang C. DNA Sequencing Technologies Acm Computing Surveys. 52: 1-30. DOI: 10.1145/3340286 |
0.777 |
|
| 2019 |
Wang W, Yang S, Lin Q, Zhang Q, Wong K, Coello Coello CA, Chen J. An Effective Ensemble Framework for Multiobjective Optimization Ieee Transactions On Evolutionary Computation. 23: 645-659. DOI: 10.1109/Tevc.2018.2879078 |
0.596 |
|
| 2019 |
Lin Q, Liu S, Wong K, Gong M, Coello Coello CA, Chen J, Zhang J. A Clustering-Based Evolutionary Algorithm for Many-Objective Optimization Problems Ieee Transactions On Evolutionary Computation. 23: 391-405. DOI: 10.1109/Tevc.2018.2866927 |
0.574 |
|
| 2019 |
Liu S, Lin Q, Wong K, Ma L, Coello Coello CA, Gong D. A novel multi-objective evolutionary algorithm with dynamic decomposition strategy Swarm and Evolutionary Computation. 48: 182-200. DOI: 10.1016/J.Swevo.2019.02.010 |
0.579 |
|
| 2018 |
Li X, Zhang S, Wong KC. Single-cell RNA-seq Interpretations using Evolutionary Multiobjective Ensemble Pruning. Bioinformatics (Oxford, England). PMID 30596898 DOI: 10.1093/Bioinformatics/Bty1056 |
0.759 |
|
| 2018 |
Wong KC, Lin J, Li X, Lin Q, Liang C, Song YQ. Heterodimeric DNA motif synthesis and validations. Nucleic Acids Research. PMID 30590725 DOI: 10.1093/Nar/Gky1297 |
0.782 |
|
| 2018 |
Wong KC, Yan S, Lin Q, Li X, Peng C. Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription Factors. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30475727 DOI: 10.1109/Tcbb.2018.2882548 |
0.783 |
|
| 2018 |
Lin J, Wong KC. Off-target predictions in CRISPR-Cas9 gene editing using deep learning. Bioinformatics (Oxford, England). 34: i656-i663. PMID 30423072 DOI: 10.1093/Bioinformatics/Bty554 |
0.776 |
|
| 2018 |
Wong KC. DNA Motif Recognition Modeling from Protein Sequences. Iscience. 7: 198-211. PMID 30267681 DOI: 10.1016/J.Isci.2018.09.003 |
0.333 |
|
| 2018 |
Zhang S, Li X, Lin Q, Wong KC. Synergizing CRISPR/Cas9 Off-Target Predictions for Ensemble Insights and Practical Applications. Bioinformatics (Oxford, England). PMID 30169558 DOI: 10.1093/Bioinformatics/Bty748 |
0.797 |
|
| 2018 |
Li X, Zhang S, Wong KC. Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994485 DOI: 10.1109/Tcbb.2018.2849759 |
0.76 |
|
| 2018 |
Zhang J, Kwong S, Liu G, Lin Q, Wong KC. PathEmb: Random Walk based Document Embedding for Global Pathway Similarity Search. Ieee Journal of Biomedical and Health Informatics. PMID 29993756 DOI: 10.1109/Jbhi.2018.2830806 |
0.741 |
|
| 2018 |
Li X, Wong KC. Evolutionary Multiobjective Clustering and Its Applications to Patient Stratification. Ieee Transactions On Cybernetics. PMID 29993679 DOI: 10.1109/Tcyb.2018.2817480 |
0.615 |
|
| 2018 |
Lin Q, Liu S, Zhu Q, Tang C, Song R, Chen J, Coello CAC, Wong K, Zhang J. Particle Swarm Optimization With a Balanceable Fitness Estimation for Many-Objective Optimization Problems Ieee Transactions On Evolutionary Computation. 22: 32-46. DOI: 10.1109/Tevc.2016.2631279 |
0.578 |
|
| 2018 |
Lin Q, Ma Y, Chen J, Zhu Q, Coello CAC, Wong K, Chen F. An adaptive immune-inspired multi-objective algorithm with multiple differential evolution strategies Information Sciences. 430: 46-64. DOI: 10.1016/J.Ins.2017.11.030 |
0.605 |
|
| 2018 |
Cui L, Li G, Zhu Z, Lin Q, Wong K, Chen J, Lu N, Lu J. Adaptive multiple-elites-guided composite differential evolution algorithm with a shift mechanism Information Sciences. 422: 122-143. DOI: 10.1016/J.Ins.2017.09.002 |
0.598 |
|
| 2018 |
Chen J, Yan S, Wong K. Verbal aggression detection on Twitter comments: convolutional neural network for short-text sentiment analysis Neural Computing and Applications. 32: 10809-10818. DOI: 10.1007/S00521-018-3442-0 |
0.777 |
|
| 2017 |
Li X, Wong KC. Elucidating Genome-Wide Protein-RNA Interactions using Differential Evolution. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990254 DOI: 10.1109/Tcbb.2017.2776224 |
0.65 |
|
| 2017 |
Li X, Wong KC. Multiobjective Patient Stratification using Evolutionary Multiobjective Optimization. Ieee Journal of Biomedical and Health Informatics. PMID 29990162 DOI: 10.1109/Jbhi.2017.2769711 |
0.649 |
|
| 2017 |
Zhang J, Kwong S, Wong KC. ToBio: Global Pathway Similarity Search based on Topological and Biological Features. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990160 DOI: 10.1109/Tcbb.2017.2769642 |
0.68 |
|
| 2017 |
Lin Q, Jin G, Ma Y, Wong KC, Coello Coello CA, Li J, Chen J, Zhang J. A Diversity-Enhanced Resource Allocation Strategy for Decomposition-Based Multiobjective Evolutionary Algorithm. Ieee Transactions On Cybernetics. PMID 28885164 DOI: 10.1109/Tcyb.2017.2739185 |
0.587 |
|
| 2017 |
Yan S, Wong KC. Elucidating high-dimensional cancer hallmark annotation via enriched ontology. Journal of Biomedical Informatics. PMID 28723579 DOI: 10.1016/J.Jbi.2017.07.011 |
0.76 |
|
| 2017 |
Li X, Ma S, Wong KC. Evolving Spatial Clusters of Genomic Regions from High-Throughput Chromatin Conformation Capture data. Ieee Transactions On Nanobioscience. PMID 28708563 DOI: 10.1109/Tnb.2017.2725991 |
0.629 |
|
| 2017 |
Wong KC. MotifHyades: Expectation Maximization for de novo DNA Motif Pair Discovery on Paired Sequences. Bioinformatics (Oxford, England). PMID 28633280 DOI: 10.1093/Bioinformatics/Btx381 |
0.351 |
|
| 2017 |
Zhu Q, Lin Q, Chen W, Wong KC, Coello Coello CA, Li J, Chen J, Zhang J. An External Archive-Guided Multiobjective Particle Swarm Optimization Algorithm. Ieee Transactions On Cybernetics. PMID 28613192 DOI: 10.1109/Tcyb.2017.2710133 |
0.595 |
|
| 2017 |
Li X, Wong KC. A Comparative Study for Identifying the Chromosome-Wide Spatial Clusters from High-Throughput Chromatin Conformation Capture data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28333638 DOI: 10.1109/Tcbb.2017.2684800 |
0.639 |
|
| 2017 |
Zhang J, Kwong S, Jia Y, Wong KC. NSSRF: global network similarity search with subgraph signatures and its applications. Bioinformatics (Oxford, England). PMID 28158419 DOI: 10.1093/Bioinformatics/Btx051 |
0.665 |
|
| 2017 |
Cui L, Li G, Zhu Z, Lin Q, Wen Z, Lu N, Wong K, Chen J. A novel artificial bee colony algorithm with an adaptive population size for numerical function optimization Information Sciences. 414: 53-67. DOI: 10.1016/J.Ins.2017.05.044 |
0.587 |
|
| 2016 |
Wong KC, Peng C, Yan S, Liang C. Probabilistic Inference on Multiple Normalized Genome-Wide Signal Profiles with Model Regularization. Ieee Transactions On Nanobioscience. PMID 27893398 DOI: 10.1109/Tnb.2016.2631406 |
0.791 |
|
| 2016 |
Wong KC, Li Y, Peng C, Wong HS. A Comparison Study for DNA Motif Modeling on Protein Binding Microarray. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 261-271. PMID 27045826 DOI: 10.1109/Tcbb.2015.2443782 |
0.435 |
|
| 2016 |
Wong KC, Peng C, Li Y. Evolving Transcription Factor Binding Site Models From Protein Binding Microarray Data. Ieee Transactions On Cybernetics. PMID 26887021 DOI: 10.1109/Tcyb.2016.2519380 |
0.461 |
|
| 2016 |
Wang R, Kwong S, Jiang Q, Wong KC. Active Learning Based on Single-Hidden Layer Feed-Forward Neural Network Proceedings - 2015 Ieee International Conference On Systems, Man, and Cybernetics, Smc 2015. 2158-2163. DOI: 10.1109/SMC.2015.377 |
0.468 |
|
| 2015 |
Wong KC, Peng C, Li Y. Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1416-28. PMID 26671811 DOI: 10.1109/Tcbb.2015.2424421 |
0.477 |
|
| 2015 |
Wong KC, Li Y, Peng C, Moses AM, Zhang Z. Computational learning on specificity-determining residue-nucleotide interactions. Nucleic Acids Research. PMID 26527718 DOI: 10.1093/Nar/Gkv1134 |
0.71 |
|
| 2015 |
Wong KC, Li Y, Peng C. Identification of Coupling DNA Motif Pairs on Long-Range Chromatin Interactions in Human K562 Cells. Bioinformatics (Oxford, England). PMID 26411866 DOI: 10.1093/Bioinformatics/Btv555 |
0.381 |
|
| 2015 |
Wong KC, Li Y, Peng C, Zhang Z. SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles. Bioinformatics (Oxford, England). 31: 17-24. PMID 25192742 DOI: 10.1093/Bioinformatics/Btu604 |
0.721 |
|
| 2014 |
Cromar G, Wong KC, Loughran N, On T, Song H, Xiong X, Zhang Z, Parkinson J. New tricks for "old" domains: how novel architectures and promiscuous hubs contributed to the organization and evolution of the ECM. Genome Biology and Evolution. 6: 2897-917. PMID 25323955 DOI: 10.1093/Gbe/Evu228 |
0.674 |
|
| 2014 |
Li Y, Liang C, Wong KC, Luo J, Zhang Z. Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. Bioinformatics (Oxford, England). 30: 2627-35. PMID 24894504 DOI: 10.1093/Bioinformatics/Btu373 |
0.681 |
|
| 2014 |
Li Y, Liang C, Wong KC, Jin K, Zhang Z. Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach. Nucleic Acids Research. 42: e76. PMID 24609385 DOI: 10.1093/Nar/Gku182 |
0.682 |
|
| 2014 |
Wong KC, Zhang Z. SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences. Bioinformatics (Oxford, England). PMID 24389653 DOI: 10.1093/Bioinformatics/Btt769 |
0.681 |
|
| 2014 |
Li Y, Goldenberg A, Wong KC, Zhang Z. A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information. Bioinformatics (Oxford, England). 30: 621-8. PMID 24135265 DOI: 10.1093/Bioinformatics/Btt599 |
0.672 |
|
| 2014 |
Wong K, Peng C, Li Y, Chan T. Herd Clustering: A synergistic data clustering approach using collective intelligence Applied Soft Computing. 23: 61-75. DOI: 10.1016/J.Asoc.2014.05.034 |
0.389 |
|
| 2013 |
Wong KC, Chan TM, Peng C, Li Y, Zhang Z. DNA motif elucidation using belief propagation. Nucleic Acids Research. 41: e153. PMID 23814189 DOI: 10.1093/Nar/Gkt574 |
0.706 |
|
| 2012 |
Fan M, Wong KC, Ryu T, Ravasi T, Gao X. SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification. Plos One. 7: e39475. PMID 22761802 DOI: 10.1371/Journal.Pone.0039475 |
0.345 |
|
| 2012 |
Leung Y, Wong MH, Wong KC, Zhang W, Leung KS. A novel web-based system for tropical cyclone analysis and prediction International Journal of Geographical Information Science. 26: 75-97. DOI: 10.1080/13658816.2011.572075 |
0.597 |
|
| 2012 |
Wong K, Wu C, Mok RK, Peng C, Zhang Z. Evolutionary multimodal optimization using the principle of locality Information Sciences. 194: 138-170. DOI: 10.1016/J.Ins.2011.12.016 |
0.672 |
|
| 2011 |
Chan TM, Wong KC, Lee KH, Wong MH, Lau CK, Tsui SK, Leung KS. Discovering approximate-associated sequence patterns for protein-DNA interactions. Bioinformatics (Oxford, England). 27: 471-8. PMID 21193520 DOI: 10.1093/Bioinformatics/Btq682 |
0.673 |
|
| 2011 |
Wong KC, Peng C, Wong MH, Leung KS. Generalizing and learning protein-DNA binding sequence representations by an evolutionary algorithm Soft Computing. 15: 1631-1642. DOI: 10.1007/s00500-011-0692-5 |
0.623 |
|
| 2010 |
Leung KS, Wong KC, Chan TM, Wong MH, Lee KH, Lau CK, Tsui SK. Discovering protein-DNA binding sequence patterns using association rule mining. Nucleic Acids Research. 38: 6324-37. PMID 20529874 DOI: 10.1093/Nar/Gkq500 |
0.66 |
|
| 2010 |
Wong KC, Leung KS, Wong MH. Protein structure prediction on a lattice model via multimodal optimization techniques Proceedings of the 12th Annual Genetic and Evolutionary Computation Conference, Gecco '10. 15-22. DOI: 10.1145/1830483.1830513 |
0.6 |
|
| 2010 |
Wong KC, Leung KS, Wong MH. Effect of spatial locality on an evolutionary algorithm for multimodal optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6024: 481-490. DOI: 10.1007/978-3-642-12239-2-50 |
0.589 |
|
| 2009 |
Wong KC, Leung KS, Wong MH. An evolutionary algorithm with species-specific explosion for multimodal optimization Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, Gecco-2009. 923-930. DOI: 10.1145/1569901.1570027 |
0.58 |
|
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