David Dulin - Related publications

Affiliations: 
University of Erlangen-Nuremberg, Germany 
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chérif N, Zouari M, Amdouni F, Mefteh M, Ksouri A, Bouhaouala-Zahar B, Raouafi N. Direct Amperometric Sensing of Fish Nodavirus RNA Using Gold Nanoparticle/DNA-Based Bioconjugates. Pathogens (Basel, Switzerland). 10. PMID 34451396 DOI: 10.3390/pathogens10080932   
2021 Quinodoz SA, Jachowicz JW, Bhat P, Ollikainen N, Banerjee AK, Goronzy IN, Blanco MR, Chovanec P, Chow A, Markaki Y, Thai J, Plath K, Guttman M. RNA promotes the formation of spatial compartments in the nucleus. Cell. 184: 5775-5790.e30. PMID 34739832 DOI: 10.1016/j.cell.2021.10.014   
2021 Mishra RK, Mukherjee S, Bhattacharyya D. Maturation of siRNA by strand separation: Steered molecular dynamics study. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 34726123 DOI: 10.1080/07391102.2021.1994468   
2021 Shin Y, Murakami KS. Watching the bacterial RNA polymerase transcription reaction by time-dependent soak-trigger-freeze X-ray crystallography. The Enzymes. 49: 305-314. PMID 34696836 DOI: 10.1016/bs.enz.2021.06.009   
2021 Xiao S, Guo S, Han J, Sun Y, Wang M, Chen Y, Fang X, Yang F, Mu Y, Zhang L, Ding Y, Zhang N, Jiang H, Chen K, Zhao K, et al. High-Throughput-Methyl-Reading (HTMR) assay: a solution based on nucleotide methyl-binding proteins enables large-scale screening for DNA/RNA methyltransferases and demethylases. Nucleic Acids Research. PMID 34718755 DOI: 10.1093/nar/gkab989   
2021 Xiao L, Jun YW, Kool ET. DNA tiling enables precise acylation-based labeling and control of mRNA. Angewandte Chemie (International Ed. in English). PMID 34624169 DOI: 10.1002/anie.202112106   
2021 Ingram ZM, Schneider DA, Lucius AL. Transient-state kinetic analysis of multi-nucleotide addition catalyzed by RNA polymerase I. Biophysical Journal. 120: 4378-4390. PMID 34509510 DOI: 10.1016/j.bpj.2021.09.008   
2021 Klindziuk A, Kolomeisky AB. Understanding the molecular mechanisms of transcriptional bursting. Physical Chemistry Chemical Physics : Pccp. 23: 21399-21406. PMID 34550142 DOI: 10.1039/d1cp03665c   
2021 Golyshev VM, Pyshnyi DV, Lomzov AA. [Calculation of Energy for RNA/RNA and DNA/RNA Duplex Formation by Molecular Dynamics Simulation]. Molekuliarnaia Biologiia. 55: 1030-1044. PMID 34837707 DOI: 10.31857/S0026898421060069   
2021 Rombouts S, Nollmann M. RNA imaging in bacteria. Fems Microbiology Reviews. 45. PMID 33016325 DOI: 10.1093/femsre/fuaa051   
2021 Chandler M, Johnson B, Khisamutdinov E, Dobrovolskaia MA, Sztuba-Solinska J, Salem AK, Breyne K, Chammas R, Walter NG, Contreras LM, Guo P, Afonin KA. The International Society of RNA Nanotechnology and Nanomedicine (ISRNN): The Present and Future of the Burgeoning Field. Acs Nano. PMID 34677049 DOI: 10.1021/acsnano.0c10240   
2021 Fang Y, Changavi A, Yang M, Sun L, Zhang A, Sun D, Sun Z, Zhang B, Xu MQ. Nanopore Whole Transcriptome Analysis and Pathogen Surveillance by a Novel Solid-Phase Catalysis Approach. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2103373. PMID 34837482 DOI: 10.1002/advs.202103373   
2021 Espinoza S, Bon C, Valentini P, Pierattini B, Matey AT, Damiani D, Pulcrano S, Sanges R, Persichetti F, Takahashi H, Carninci P, Santoro C, Cotella D, Gustincich S. SINEUPs: a novel toolbox for RNA therapeutics. Essays in Biochemistry. 65: 775-789. PMID 34623427 DOI: 10.1042/EBC20200114   
2021 Endo M, Kim JI, Shioi NA, Iwai S, Kuraoka I. endonuclease V is a ribonuclease specific for inosine-containing single-stranded RNA. Open Biology. 11: 210148. PMID 34665969 DOI: 10.1098/rsob.210148   
2021 Ghimire S, Stewart CG, Thurman AL, Pezzulo AA. Performance of a scalable RNA extraction-free transcriptome profiling method for adherent cultured human cells. Scientific Reports. 11: 19438. PMID 34593905 DOI: 10.1038/s41598-021-98912-x   
2021 Chatterjee B, Shen CJ, Majumder P. RNA Modifications and RNA Metabolism in Neurological Disease Pathogenesis. International Journal of Molecular Sciences. 22. PMID 34769301 DOI: 10.3390/ijms222111870   
2021 Roden CA, Gladfelter AS. Design considerations for analyzing protein translation regulation by condensates. Rna (New York, N.Y.). PMID 34670845 DOI: 10.1261/rna.079002.121   
2021 Johnson KA, Dangerfield T. Mechanisms of inhibition of viral RNA replication by nucleotide analogs. The Enzymes. 49: 39-62. PMID 34696838 DOI: 10.1016/bs.enz.2021.07.001   
2021 Tian T, Qiu Z, Jiang Y, Zhu D, Zhou X. Exploiting the orthogonal CRISPR-Cas12a/Cas13a trans-cleavage for dual-gene virus detection using a handheld device. Biosensors & Bioelectronics. 196: 113701. PMID 34653714 DOI: 10.1016/j.bios.2021.113701   
2021 Malone B, Campbell EA, Darst SA. CoV-er all the bases: Structural perspectives of SARS-CoV-2 RNA synthesis. The Enzymes. 49: 1-37. PMID 34696829 DOI: 10.1016/bs.enz.2021.06.004   
2021 Currie SL, Rosen MK. Using quantitative reconstitution to investigate multi-component condensates. Rna (New York, N.Y.). PMID 34772789 DOI: 10.1261/rna.079008.121   
2021 Han P, Go MK, Chow JY, Xue B, Lim YP, Crone MA, Storch M, Freemont PS, Yew WS. A high-throughput pipeline for scalable kit-free RNA extraction. Scientific Reports. 11: 23260. PMID 34853385 DOI: 10.1038/s41598-021-02742-w   
2021 Hohmann KF, Blümler A, Heckel A, Fürtig B. The RNA chaperone StpA enables fast RNA refolding by destabilization of mutually exclusive base pairs within competing secondary structure elements. Nucleic Acids Research. PMID 34614185 DOI: 10.1093/nar/gkab876   
2021 Yan C, Dodd T, Yu J, Leung B, Xu J, Oh J, Wang D, Ivanov I. Mechanism of Rad26-assisted rescue of stalled RNA polymerase II in transcription-coupled repair. Nature Communications. 12: 7001. PMID 34853308 DOI: 10.1038/s41467-021-27295-4   
2021 Domingo E, García-Crespo C, Lobo-Vega R, Perales C. Mutation Rates, Mutation Frequencies, and Proofreading-Repair Activities in RNA Virus Genetics. Viruses. 13. PMID 34578463 DOI: 10.3390/v13091882   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Ujibe K, Nishimura K, Kashima M, Hirata H. Direct-TRI: High-throughput RNA-extracting Method for All Stages of Zebrafish Development. Bio-Protocol. 11: e4136. PMID 34604443 DOI: 10.21769/BioProtoc.4136   
2021 Radecki P, Uppuluri R, Deshpande K, Aviran S. Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sites. Rna Biology. 1-16. PMID 34606413 DOI: 10.1080/15476286.2021.1971382   
2021 Heo T, Kang H, Choi S, Kim J. Detection of Island mRNAs Using Toehold Sensors in . Life (Basel, Switzerland). 11. PMID 34833155 DOI: 10.3390/life11111280   
2021 Sorber L, Claes B, Zwaenepoel K, Van Dorst B, De Winne K, Fransen E, Wener R, Lapperre T, Lardon F, Pauwels P. Evaluation of Cytologic Sample Preparations for Compatibility With Nucleic Acid Analysis. American Journal of Clinical Pathology. PMID 34542583 DOI: 10.1093/ajcp/aqab121   
2021 Park HJ, Jung C, Yoo TH. Development of one-step isothermal methods to detect RNAs using hairpin-loop signal converters and proximity proteolysis reaction. Biosensors & Bioelectronics. 197: 113769. PMID 34773751 DOI: 10.1016/j.bios.2021.113769   
2021 Zhang D, Chen SJ, Zhou R. Modeling Noncanonical RNA Base Pairs by a Coarse-Grained IsRNA2 Model. The Journal of Physical Chemistry. B. PMID 34694128 DOI: 10.1021/acs.jpcb.1c07288   
2021 Feng JY, Ray AS. HCV RdRp, sofosbuvir and beyond. The Enzymes. 49: 63-82. PMID 34696839 DOI: 10.1016/bs.enz.2021.06.003   
2021 Zhou M, Wang DO, Li W, Zheng J. RNA adduction derived from electrophilic species in vitro and in vivo. Chemico-Biological Interactions. 351: 109748. PMID 34801539 DOI: 10.1016/j.cbi.2021.109748   
2021 De Bisschop G, Allouche D, Frezza E, Masquida B, Ponty Y, Will S, Sargueil B. Progress toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA Structure. Non-Coding Rna. 7. PMID 34842779 DOI: 10.3390/ncrna7040071   
2021 Ojha N, Diaz Quiroz JF, Rosenthal JJC. In vitro and in cellula site-directed RNA editing using the λNDD-BoxB system. Methods in Enzymology. 658: 335-358. PMID 34517953 DOI: 10.1016/bs.mie.2021.06.009   
2021 Biswal JK, Ranjan R, Dahiya SS, Mallick S, Mohapatra JK. Regenerated silica-based RNA purification columns to address the short supply of RNA purification kits for COVID-19 diagnosis. Molecular Biology Reports. 48: 6871-6877. PMID 34510319 DOI: 10.1007/s11033-021-06688-0   
2021 Zayani R, Rezig D, Fares W, Marrakchi M, Essafi M, Raouafi N. Multiplexed Magnetofluorescent Bioplatform for the Sensitive Detection of SARS-CoV-2 Viral RNA without Nucleic Acid Amplification. Analytical Chemistry. 93: 11225-11232. PMID 34338520 DOI: 10.1021/acs.analchem.1c01950   
2021 Sharp PA, Chakraborty AK, Henninger JE, Young RA. RNA in formation and regulation of transcriptional condensates. Rna (New York, N.Y.). PMID 34772787 DOI: 10.1261/rna.078997.121   
2021 Dignan LM, Turiello R, Layne TR, O'Connell KC, Hickey J, Chapman J, Poulter MD, Landers JP. An ultrafast SARS-CoV-2 virus enrichment and extraction method compatible with multiple modalities for RNA detection. Analytica Chimica Acta. 1180: 338846. PMID 34538333 DOI: 10.1016/j.aca.2021.338846   
2021 Janissen R, Woodman A, Shengjuler D, Vallet T, Lee KM, Kuijpers L, Moustafa IM, Fitzgerald F, Huang PN, Perkins AL, Harki DA, Arnold JJ, Solano B, Shih SR, Vignuzzi M, et al. Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses. Molecular Cell. PMID 34687604 DOI: 10.1016/j.molcel.2021.10.003   
2021 Das AS, Alfonzo JD, Accornero F. The importance of RNA modifications: From cells to muscle physiology. Wiley Interdisciplinary Reviews. Rna. e1700. PMID 34664402 DOI: 10.1002/wrna.1700   
2021 Saha P, Datta S, Ghosh S, Samanta A, Ghosh P, Sinha D. Bioengineering of Extracellular Vesicles: Exosome-Based Next-Generation Therapeutic Strategy in Cancer. Bioengineering (Basel, Switzerland). 8. PMID 34677212 DOI: 10.3390/bioengineering8100139   
2021 Li X, Wang CY. From bulk, single-cell to spatial RNA sequencing. International Journal of Oral Science. 13: 36. PMID 34782601 DOI: 10.1038/s41368-021-00146-0   
2021 Pérez-Cañamás M, Hevia E, Katsarou K, Hernández C. Genetic evidence for the involvement of Dicer-like 2 and 4 as well as Argonaute 2 in the response against . The Journal of General Virology. 102. PMID 34623234 DOI: 10.1099/jgv.0.001656   
2021 Ju Y, Kim J, Park Y, Lee CY, Kim K, Hong KH, Lee H, Yong D, Park HG. Rapid and accurate clinical testing for COVID-19 by nicking and extension chain reaction system-based amplification (NESBA). Biosensors & Bioelectronics. 196: 113689. PMID 34688112 DOI: 10.1016/j.bios.2021.113689   
2021 Guo X, Tariq M, Lai Y, Kanwal S, Lv Y, Wang X, Li N, Jiang M, Meng J, Hu J, Yuan J, Luo Z, Ward C, Volpe G, Wang D, et al. Capture of the newly transcribed RNA interactome using click chemistry. Nature Protocols. PMID 34697467 DOI: 10.1038/s41596-021-00609-y   
2021 Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Günther S, Grünewald K, Rosenthal M, Cusack S. Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity. Nature Communications. 12: 7018. PMID 34857749 DOI: 10.1038/s41467-021-27305-5   
2021 Govindkumar B, Kavyashree B, Patel K, Sasidharan K, T SA, Thomas L, Bkg P, Hn R, R M, Acharya KK. Ex-Ex Primer: an experimentally validated tool for designing oligonucleotides spanning spliced nucleic acid regions from multiple species. Journal of Biotechnology. PMID 34756973 DOI: 10.1016/j.jbiotec.2021.10.009