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Roy Parker - Publications

Chemistry and Biochemistry University of Colorado, Boulder, Boulder, CO, United States 
Control of mRNA Function in Eukaryotic Cells

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jiang J, Bramão I, Khazenzon A, Wang SF, Johansson M, Wagner AD. Temporal Dynamics of Memory-guided Cognitive Control and Generalization of Control via Overlapping Associative Memories. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 32019830 DOI: 10.1523/JNEUROSCI.1869-19.2020  0.52
2016 Wheeler JR, Matheny T, Jain S, Abrisch R, Parker R. Distinct stages in stress granule assembly and disassembly. Elife. 5. PMID 27602576 DOI: 10.7554/eLife.18413  0.36
2016 Banani SF, Rice AM, Peeples WB, Lin Y, Jain S, Parker R, Rosen MK. Compositional Control of Phase-Separated Cellular Bodies. Cell. PMID 27374333 DOI: 10.1016/j.cell.2016.06.010  0.36
2016 Shukla S, Parker R. Hypo- and Hyper-Assembly Diseases of RNA-Protein Complexes. Trends in Molecular Medicine. PMID 27263464 DOI: 10.1016/j.molmed.2016.05.005  0.36
2016 Eshleman N, Liu G, McGrath K, Parker R, Buchan JR. Defects in THO/TREX-2 function cause accumulation of novel cytoplasmic mRNP granules that can be cleared by autophagy. Rna (New York, N.Y.). PMID 27251550 DOI: 10.1261/rna.057224.116  0.36
2016 Garcia JF, Parker R. Ubiquitous accumulation of 3' mRNA decay fragments in Saccharomyces cerevisiae mRNAs with chromosomally integrated MS2 arrays. Rna (New York, N.Y.). 22: 657-9. PMID 27090788 DOI: 10.1261/rna.056325.116  0.36
2016 Mitchell SF, Parker R. Identification of Endogenous mRNA-Binding Proteins in Yeast Using Crosslinking and PolyA Enrichment. Methods in Molecular Biology (Clifton, N.J.). 1421: 153-63. PMID 26965264 DOI: 10.1007/978-1-4939-3591-8_13  0.36
2016 Lasda E, Parker R. Circular RNAs Co-Precipitate with Extracellular Vesicles: A Possible Mechanism for circRNA Clearance. Plos One. 11: e0148407. PMID 26848835 DOI: 10.1371/journal.pone.0148407  0.36
2016 Jain S, Wheeler JR, Walters RW, Agrawal A, Barsic A, Parker R. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure. Cell. PMID 26777405 DOI: 10.1016/j.cell.2015.12.038  0.36
2015 Mitchell SF, Parker R. Modifications on Translation Initiation. Cell. 163: 796-8. PMID 26544933 DOI: 10.1016/j.cell.2015.10.056  0.36
2015 Walters RW, Parker R. Coupling of Ribostasis and Proteostasis: Hsp70 Proteins in mRNA Metabolism. Trends in Biochemical Sciences. 40: 552-9. PMID 26410596 DOI: 10.1016/j.tibs.2015.08.004  0.36
2015 Walters RW, Muhlrad D, Garcia J, Parker R. Differential effects of Ydj1 and Sis1 on Hsp70-mediated clearance of stress granules in Saccharomyces cerevisiae. Rna (New York, N.Y.). 21: 1660-71. PMID 26199455 DOI: 10.1261/rna.053116.115  0.36
2015 Garcia JF, Parker R. MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system. Rna (New York, N.Y.). 21: 1393-5. PMID 26092944 DOI: 10.1261/rna.051797.115  0.36
2015 Mitchell SF, Parker R. In vivo cross-linking followed by polyA enrichment to identify yeast mRNA binding proteins. Methods in Molecular Biology (Clifton, N.J.). 1259: 35-47. PMID 25579578 DOI: 10.1007/978-1-4939-2214-7_3  0.36
2015 Schwartz JC, Cech TR, Parker RR. Biochemical Properties and Biological Functions of FET Proteins. Annual Review of Biochemistry. 84: 355-79. PMID 25494299 DOI: 10.1146/annurev-biochem-060614-034325  0.36
2014 Harigaya Y, Parker R. Fragile X mental retardation protein and the ribosome. Molecular Cell. 54: 330-2. PMID 24813710 DOI: 10.1016/j.molcel.2014.04.027  0.36
2014 Decker CJ, Parker R. Analysis of double-stranded RNA from microbial communities identifies double-stranded RNA virus-like elements. Cell Reports. 7: 898-906. PMID 24767992 DOI: 10.1016/j.celrep.2014.03.049  0.36
2014 Walters R, Parker R. Quality control: Is there quality control of localized mRNAs? The Journal of Cell Biology. 204: 863-8. PMID 24637320 DOI: 10.1083/jcb.201401059  0.36
2014 Walters RW, Shumilin IA, Yoon JH, Minor W, Parker R. Edc3 function in yeast and mammals is modulated by interaction with NAD-related compounds. G3 (Bethesda, Md.). 4: 613-22. PMID 24504254 DOI: 10.1534/g3.114.010470  0.36
2014 Sudhakaran IP, Hillebrand J, Dervan A, Das S, Holohan EE, Hülsmeier J, Sarov M, Parker R, VijayRaghavan K, Ramaswami M. FMRP and Ataxin-2 function together in long-term olfactory habituation and neuronal translational control. Proceedings of the National Academy of Sciences of the United States of America. 111: E99-E108. PMID 24344294 DOI: 10.1073/pnas.1309543111  0.36
2014 Wu D, Muhlrad D, Bowler MW, Jiang S, Liu Z, Parker R, Song H. Lsm2 and Lsm3 bridge the interaction of the Lsm1-7 complex with Pat1 for decapping activation. Cell Research. 24: 233-46. PMID 24247251 DOI: 10.1038/cr.2013.152  0.36
2013 Ramaswami M, Taylor JP, Parker R. Altered ribostasis: RNA-protein granules in degenerative disorders. Cell. 154: 727-36. PMID 23953108 DOI: 10.1016/j.cell.2013.07.038  0.36
2013 Buchan JR, Kolaitis RM, Taylor JP, Parker R. Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function. Cell. 153: 1461-74. PMID 23791177 DOI: 10.1016/j.cell.2013.05.037  0.36
2012 Lai T, Cho H, Liu Z, Bowler MW, Piao S, Parker R, Kim YK, Song H. Structural basis of the PNRC2-mediated link between mrna surveillance and decapping. Structure (London, England : 1993). 20: 2025-37. PMID 23085078 DOI: 10.1016/j.str.2012.09.009  0.36
2012 Buchan JR, Capaldi AP, Parker R. TOR-tured yeast find a new way to stand the heat. Molecular Cell. 47: 155-7. PMID 22841000 DOI: 10.1016/j.molcel.2012.07.005  0.36
2012 Decker CJ, Parker R. P-bodies and stress granules: possible roles in the control of translation and mRNA degradation. Cold Spring Harbor Perspectives in Biology. 4: a012286. PMID 22763747 DOI: 10.1101/cshperspect.a012286  0.36
2012 Harigaya Y, Parker R. Global analysis of mRNA decay intermediates in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 109: 11764-9. PMID 22752303 DOI: 10.1073/pnas.1119741109  0.36
2011 Chekulaeva M, Mathys H, Zipprich JT, Attig J, Colic M, Parker R, Filipowicz W. miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs. Nature Structural & Molecular Biology. 18: 1218-26. PMID 21984184 DOI: 10.1038/nsmb.2166  0.36
2011 Hilliker A, Gao Z, Jankowsky E, Parker R. The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex. Molecular Cell. 43: 962-72. PMID 21925384 DOI: 10.1016/j.molcel.2011.08.008  0.36
2011 McCann C, Holohan EE, Das S, Dervan A, Larkin A, Lee JA, Rodrigues V, Parker R, Ramaswami M. The Ataxin-2 protein is required for microRNA function and synapse-specific long-term olfactory habituation. Proceedings of the National Academy of Sciences of the United States of America. 108: E655-62. PMID 21795609 DOI: 10.1073/pnas.1107198108  0.36
2010 Harigaya Y, Parker R. No-go decay: a quality control mechanism for RNA in translation. Wiley Interdisciplinary Reviews. Rna. 1: 132-41. PMID 21956910 DOI: 10.1002/wrna.17  0.36
2010 Hillebrand J, Pan K, Kokaram A, Barbee S, Parker R, Ramaswami M. The Me31B DEAD-Box Helicase Localizes to Postsynaptic Foci and Regulates Expression of a CaMKII Reporter mRNA in Dendrites of Drosophila Olfactory Projection Neurons. Frontiers in Neural Circuits. 4: 121. PMID 21267420 DOI: 10.3389/fncir.2010.00121  0.36
2010 Chekulaeva M, Parker R, Filipowicz W. The GW/WG repeats of Drosophila GW182 function as effector motifs for miRNA-mediated repression. Nucleic Acids Research. 38: 6673-83. PMID 20530530 DOI: 10.1093/nar/gkq501  0.36
2010 Yoon JH, Parker R. Coil-in-to snRNP assembly and Cajal bodies. Nature Structural & Molecular Biology. 17: 391-3. PMID 20368721 DOI: 10.1038/nsmb0410-391  0.36
2010 Harigaya Y, Jones BN, Muhlrad D, Gross JD, Parker R. Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 30: 1446-56. PMID 20086104 DOI: 10.1128/MCB.01305-09  0.36
2009 Thompson DM, Parker R. Stressing out over tRNA cleavage. Cell. 138: 215-9. PMID 19632169 DOI: 10.1016/j.cell.2009.07.001  0.36
2009 Cziko AM, McCann CT, Howlett IC, Barbee SA, Duncan RP, Luedemann R, Zarnescu D, Zinsmaier KE, Parker RR, Ramaswami M. Genetic modifiers of dFMR1 encode RNA granule components in Drosophila. Genetics. 182: 1051-60. PMID 19487564 DOI: 10.1534/genetics.109.103234  0.36
2009 Passos DO, Doma MK, Shoemaker CJ, Muhlrad D, Green R, Weissman J, Hollien J, Parker R. Analysis of Dom34 and its function in no-go decay. Molecular Biology of the Cell. 20: 3025-32. PMID 19420139 DOI: 10.1091/mbc.E09-01-0028  0.36
2009 Thompson DM, Parker R. The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. The Journal of Cell Biology. 185: 43-50. PMID 19332891 DOI: 10.1083/jcb.200811119  0.36
2009 Chekulaeva M, Filipowicz W, Parker R. Multiple independent domains of dGW182 function in miRNA-mediated repression in Drosophila. Rna (New York, N.Y.). 15: 794-803. PMID 19304924 DOI: 10.1261/rna.1364909  0.36
2008 Hilliker A, Parker R. Stressed out? Make some modifications! Nature Cell Biology. 10: 1129-30. PMID 18830219 DOI: 10.1038/ncb1008-1129  0.36
2008 Pedro-Segura E, Vergara SV, Rodríguez-Navarro S, Parker R, Thiele DJ, Puig S. The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency. The Journal of Biological Chemistry. 283: 28527-35. PMID 18715869 DOI: 10.1074/jbc.M804910200  0.36
2008 Ling SH, Decker CJ, Walsh MA, She M, Parker R, Song H. Crystal structure of human Edc3 and its functional implications. Molecular and Cellular Biology. 28: 5965-76. PMID 18678652 DOI: 10.1128/MCB.00761-08  0.36
2008 Beckham CJ, Parker R. P bodies, stress granules, and viral life cycles. Cell Host & Microbe. 3: 206-12. PMID 18407064 DOI: 10.1016/j.chom.2008.03.004  0.36
2008 She M, Decker CJ, Svergun DI, Round A, Chen N, Muhlrad D, Parker R, Song H. Structural basis of dcp2 recognition and activation by dcp1. Molecular Cell. 29: 337-49. PMID 18280239 DOI: 10.1016/j.molcel.2008.01.002  0.36
2008 Beckham C, Hilliker A, Cziko AM, Noueiry A, Ramaswami M, Parker R. The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies. Molecular Biology of the Cell. 19: 984-93. PMID 18162578 DOI: 10.1091/mbc.E07-09-0954  0.36
2007 Decker CJ, Teixeira D, Parker R. Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. The Journal of Cell Biology. 179: 437-49. PMID 17984320 DOI: 10.1083/jcb.200704147  0.36
2007 Beckham CJ, Light HR, Nissan TA, Ahlquist P, Parker R, Noueiry A. Interactions between brome mosaic virus RNAs and cytoplasmic processing bodies. Journal of Virology. 81: 9759-68. PMID 17609284 DOI: 10.1128/JVI.00844-07  0.36
2007 Thompson DM, Parker R. Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae. Molecular and Cellular Biology. 27: 92-101. PMID 17074811 DOI: 10.1128/MCB.01023-06  0.36
2006 Barbee SA, Estes PS, Cziko AM, Hillebrand J, Luedeman RA, Coller JM, Johnson N, Howlett IC, Geng C, Ueda R, Brand AH, Newbury SF, Wilhelm JE, Levine RB, Nakamura A, ... Parker R, et al. Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies. Neuron. 52: 997-1009. PMID 17178403 DOI: 10.1016/j.neuron.2006.10.028  0.36
2006 Decker CJ, Parker R. CAR-1 and trailer hitch: driving mRNP granule function at the ER? The Journal of Cell Biology. 173: 159-63. PMID 16636142 DOI: 10.1083/jcb.200601153  0.36
2006 Valencia-Sanchez MA, Liu J, Hannon GJ, Parker R. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Development. 20: 515-24. PMID 16510870 DOI: 10.1101/gad.1399806  0.36
2006 Beliakova-Bethell N, Beckham C, Giddings TH, Winey M, Parker R, Sandmeyer S. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components Rna. 12: 94-101. PMID 16373495 DOI: 10.1261/rna.2264806  0.36
2006 She M, Decker CJ, Chen N, Tumati S, Parker R, Song H. Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe. Nature Structural & Molecular Biology. 13: 63-70. PMID 16341225 DOI: 10.1038/nsmb1033  0.36
1988 Parker R, Simmons T, Shuster EO, Siliciano PG, Guthrie C. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant. Molecular and Cellular Biology. 8: 3150-9. PMID 2905424  1
1987 Parker R, Siliciano PG, Guthrie C. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA. Cell. 49: 229-39. PMID 3552247  1
1987 Couto JR, Tamm J, Parker R, Guthrie C. A trans-acting suppressor restores splicing of a yeast intron with a branch point mutation. Genes & Development. 1: 445-55. PMID 2890553  1
1986 Cellini A, Parker R, McMahon J, Guthrie C, Rossi J. Activation of a cryptic TACTAAC box in the Saccharomyces cerevisiae actin intron. Molecular and Cellular Biology. 6: 1571-8. PMID 3023896  1
1986 Vijayraghavan U, Parker R, Tamm J, Iimura Y, Rossi J, Abelson J, Guthrie C. Mutations in conserved intron sequences affect multiple steps in the yeast splicing pathway, particularly assembly of the spliceosome. The Embo Journal. 5: 1683-95. PMID 3017708  1
1985 Parker R, Guthrie C. A point mutation in the conserved hexanucleotide at a yeast 5' splice junction uncouples recognition, cleavage, and ligation. Cell. 41: 107-18. PMID 2986840  1
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