| Year |
Citation |
Score |
| 2024 |
Brown SRB, Bland R, McIntyre L, Shyng S, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Genomic characterization of recovered from dairy facilities in British Columbia, Canada from 2007 to 2017. Frontiers in Microbiology. 15: 1304734. PMID 38585707 DOI: 10.3389/fmicb.2024.1304734 |
0.724 |
|
| 2023 |
Weisberg AJ, Pearce E, Kramer CG, Chang JH, Clarke CR. Diverse mobile genetic elements shaped the evolution of virulence. Microbial Genomics. 9. PMID 37930748 DOI: 10.1099/mgen.0.001127 |
0.715 |
|
| 2023 |
Rahman A, Manci M, Nadon C, Perez IA, Farsamin WF, Lampe MT, Le TH, Martínez LT, Weisberg AJ, Chang JH, Sachs JL. Competitive interference among rhizobia reduces benefits to hosts. Current Biology : Cb. 33: 3804. PMID 37699338 DOI: 10.1016/j.cub.2023.08.007 |
0.646 |
|
| 2023 |
Rahman A, Manci M, Nadon C, Perez IA, Farsamin WF, Lampe MT, Le TH, Torres Martínez L, Weisberg AJ, Chang JH, Sachs JL. Competitive interference among rhizobia reduces benefits to hosts. Current Biology : Cb. 33: 2988-3001.e4. PMID 37490853 DOI: 10.1016/j.cub.2023.06.081 |
0.704 |
|
| 2023 |
Waldburger L, Thompson MG, Weisberg AJ, Lee N, Chang JH, Keasling JD, Shih PM. Transcriptome architecture of the three main lineages of agrobacteria. Msystems. e0033323. PMID 37477440 DOI: 10.1128/msystems.00333-23 |
0.697 |
|
| 2023 |
Weisberg AJ, Chang JH. Mobile Genetic Element Flexibility as an Underlying Principle to Bacterial Evolution. Annual Review of Microbiology. PMID 37437216 DOI: 10.1146/annurev-micro-032521-022006 |
0.67 |
|
| 2023 |
Nofiani R, Ardiningsih P, Zahra STA, Sukito A, Weisberg AJ, Chang JH, Mahmud T. Genome features and secondary metabolite potential of the marine symbiont Streptomyces sp. RS2. Archives of Microbiology. 205: 244. PMID 37209150 DOI: 10.1007/s00203-023-03556-2 |
0.681 |
|
| 2023 |
Weisberg AJ, Wu Y, Chang JH, Lai EM, Kuo CH. Virulence and Ecology of Agrobacteria in the Context of Evolutionary Genomics. Annual Review of Phytopathology. PMID 37164023 DOI: 10.1146/annurev-phyto-021622-125009 |
0.712 |
|
| 2023 |
Brown PJB, Chang JH, Fuqua C. Agrobacterium tumefaciens: a Transformative Agent for Fundamental Insights into Host-Microbe Interactions, Genome Biology, Chemical Signaling, and Cell Biology. Journal of Bacteriology. e0000523. PMID 36892285 DOI: 10.1128/jb.00005-23 |
0.329 |
|
| 2022 |
Iruegas Bocardo F, Weisberg AJ, Riutta ER, Kilday KB, Bonkowski JC, Creswell TC, Daughtrey M, Rane KK, Grünwald NJ, Chang JH, Putnam M. Whole genome sequencing-based tracing of a 2022 introduction and outbreak of pv. . Phytopathology. PMID 36515656 DOI: 10.1094/PHYTO-09-22-0321-R |
0.715 |
|
| 2022 |
Weisberg AJ, Sachs JL, Chang JH. Dynamic Interactions Between Mega Symbiosis ICEs and Bacterial Chromosomes Maintain Genome Architecture. Genome Biology and Evolution. 14. PMID 35639596 DOI: 10.1093/gbe/evac078 |
0.653 |
|
| 2022 |
Weisberg AJ, Rahman A, Backus D, Tyavanagimatt P, Chang JH, Sachs JL. Pangenome Evolution Reconciles Robustness and Instability of Rhizobial Symbiosis. Mbio. e0007422. PMID 35416699 DOI: 10.1128/mbio.00074-22 |
0.719 |
|
| 2022 |
Onyeziri MC, Hardy GG, Natarajan R, Xu J, Reynolds IP, Kim J, Merritt PM, Danhorn T, Hibbing ME, Weisberg AJ, Chang JH, Fuqua C. Dual Adhesive Unipolar Polysaccharides Synthesized by Overlapping Biosynthetic Pathways in Agrobacterium tumefaciens. Molecular Microbiology. PMID 35191101 DOI: 10.1111/mmi.14887 |
0.686 |
|
| 2022 |
Nguyen HP, Weisberg AJ, Chang JH, Clarke CR. sp. nov., which causes potato common scab and is distributed across the world. International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35085064 DOI: 10.1099/ijsem.0.005225 |
0.694 |
|
| 2022 |
Chou L, Lin YC, Haryono M, Santos MNM, Cho ST, Weisberg AJ, Wu CF, Chang JH, Lai EM, Kuo CH. Modular evolution of secretion systems and virulence plasmids in a bacterial species complex. Bmc Biology. 20: 16. PMID 35022048 DOI: 10.1186/s12915-021-01221-y |
0.662 |
|
| 2022 |
Weisberg AJ, Miller M, Ream W, Grünwald NJ, Chang JH. Diversification of plasmids in a genus of pathogenic and nitrogen-fixing bacteria. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20200466. PMID 34839700 DOI: 10.1098/rstb.2020.0466 |
0.735 |
|
| 2021 |
Bland R, Waite-Cusic J, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Adaptation to a Commercial Quaternary Ammonium Compound Sanitizer Leads to Cross-Resistance to Select Antibiotics in Isolated From Fresh Produce Environments. Frontiers in Microbiology. 12: 782920. PMID 35082767 DOI: 10.3389/fmicb.2021.782920 |
0.663 |
|
| 2021 |
Bland RN, Johnson JD, Waite-Cusic JG, Weisberg AJ, Riutta ER, Chang JH, Kovacevic J. Application of Whole Genome Sequencing to Understand Diversity and Presence of Genes Associated with Sanitizer Tolerance in from Produce Handling Sources. Foods (Basel, Switzerland). 10. PMID 34681501 DOI: 10.3390/foods10102454 |
0.71 |
|
| 2021 |
Wu CF, Weisberg AJ, Davis EW, Chou L, Khan S, Lai EM, Kuo CH, Chang JH. Diversification of the Type VI Secretion System in Agrobacteria. Mbio. e0192721. PMID 34517758 DOI: 10.1128/mBio.01927-21 |
0.737 |
|
| 2021 |
Quides KW, Weisberg AJ, Trinh J, Salaheldine F, Cardenas P, Lee HH, Jariwala R, Chang JH, Sachs JL. Experimental evolution can enhance benefits of rhizobia to novel legume hosts. Proceedings. Biological Sciences. 288: 20210812. PMID 34034525 DOI: 10.1098/rspb.2021.0812 |
0.7 |
|
| 2021 |
Weisberg AJ, Grünwald NJ, Savory EA, Putnam ML, Chang JH. Genomic Approaches to Plant-Pathogen Epidemiology and Diagnostics. Annual Review of Phytopathology. PMID 34030448 DOI: 10.1146/annurev-phyto-020620-121736 |
0.682 |
|
| 2021 |
Torres-Martínez L, Porter SS, Wendlandt CE, Purcell J, Ortiz-Barbosa GS, Rothschild J, Lampe M, Warisha F, Le T, Weisberg AJ, Chang JH, Sachs JL. Evolution of specialization in a plant-microbial mutualism is explained by the oscillation theory of speciation. Evolution; International Journal of Organic Evolution. PMID 33782951 DOI: 10.1111/evo.14222 |
0.67 |
|
| 2020 |
Zhou W, Posri P, Abugrain ME, Weisberg AJ, Chang JH, Mahmud T. Biosynthesis of the Nuclear Factor of Activated T Cells Inhibitor NFAT-133 in . Acs Chemical Biology. PMID 33284588 DOI: 10.1021/acschembio.0c00775 |
0.67 |
|
| 2020 |
Weisberg AJ, Kramer CG, Kotha RR, Luthria DL, Chang J, Clarke CR. A novel species-level group of Streptomyces exhibits variation in phytopathogenicity despite conservation of virulence loci. Molecular Plant-Microbe Interactions : Mpmi. PMID 33030393 DOI: 10.1094/MPMI-06-20-0164-R |
0.732 |
|
| 2020 |
Nofiani R, Weisberg AJ, Tsunoda T, Panjaitan RGP, Brilliantoro R, Chang JH, Philmus B, Mahmud T. Antibacterial Potential of Secondary Metabolites from Indonesian Marine Bacterial Symbionts. International Journal of Microbiology. 2020: 8898631. PMID 32676116 DOI: 10.1155/2020/8898631 |
0.694 |
|
| 2020 |
Savory EA, Weisberg AJ, Stevens DM, Creason AL, Fuller SL, Pearce EM, Chang JH. Phytopathogenic Have Diverse Plasmids With Few Conserved Virulence Functions. Frontiers in Microbiology. 11: 1022. PMID 32523572 DOI: 10.3389/Fmicb.2020.01022 |
0.759 |
|
| 2020 |
Weisberg AJ, Davis EW, Tabima J, Belcher MS, Miller M, Kuo CH, Loper JE, Grünwald NJ, Putnam ML, Chang JH. Unexpected conservation and global transmission of agrobacterial virulence plasmids. Science (New York, N.Y.). 368. PMID 32499412 DOI: 10.1126/Science.Aba5256 |
0.742 |
|
| 2020 |
Gano-Cohen KA, Wendlandt CE, Al Moussawi K, Stokes PJ, Quides KW, Weisberg AJ, Chang JH, Sachs JL. Recurrent mutualism breakdown events in a legume rhizobia metapopulation. Proceedings. Biological Sciences. 287: 20192549. PMID 31992172 DOI: 10.1098/Rspb.2019.2549 |
0.717 |
|
| 2019 |
Tancos MA, Sechler AJ, Davis EW, Chang JH, Schroeder BK, Murray TD, Rogers EE. The Identification and Conservation of Tunicaminyluracil-Related Biosynthetic Gene Clusters in Several Species Collected From Australia, Africa, Eurasia, and North America. Frontiers in Microbiology. 10: 2914. PMID 31998251 DOI: 10.3389/Fmicb.2019.02914 |
0.477 |
|
| 2019 |
Turner SE, Pang YY, O'Malley MR, Weisberg AJ, Fraser VN, Yan Q, Chang J, Anderson JC. A DeoR-type transcription regulator is required for sugar-induced expression of type III secretion-encoding genes in pv. DC3000. Molecular Plant-Microbe Interactions : Mpmi. PMID 31829102 DOI: 10.1094/Mpmi-10-19-0290-R |
0.71 |
|
| 2019 |
Wu CF, Lien YW, Bondage D, Lin JS, Pilhofer M, Shih YL, Chang JH, Lai EM. Effector loading onto the VgrG carrier activates type VI secretion system assembly. Embo Reports. e47961. PMID 31808291 DOI: 10.15252/Embr.201947961 |
0.364 |
|
| 2019 |
O'Malley MR, Weisberg AJ, Chang JH, Anderson JC. Re-evaluation of a Tn5::gacA mutant of Pseudomonas syringae pv. tomato DC3000 uncovers roles for uvrC and anmK in promoting virulence. Plos One. 14: e0223637. PMID 31600319 DOI: 10.1371/Journal.Pone.0223637 |
0.715 |
|
| 2019 |
Lopes LD, Weisberg AJ, Davis EW, Varize CS, Pereira E Silva MC, Chang JH, Loper JE, Andreote FD. Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil. Plos One. 14: e0223269. PMID 31581220 DOI: 10.1371/Journal.Pone.0223269 |
0.686 |
|
| 2019 |
Thapa SP, Davis EW, Lyu Q, Weisberg AJ, Stevens DM, Clarke CR, Coaker G, Chang JH. The Evolution, Ecology, and Mechanisms of Infection by Gram-Positive, Plant-Associated Bacteria. Annual Review of Phytopathology. PMID 31283433 DOI: 10.1146/Annurev-Phyto-082718-100124 |
0.702 |
|
| 2019 |
Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang J, Lai EM. Plant pathogenic Agrobacterium tumefaciens strains have diverse type VI effector-immunity pairs and vary in in planta competitiveness. Molecular Plant-Microbe Interactions : Mpmi. PMID 30830835 DOI: 10.1094/Mpmi-01-19-0021-R |
0.451 |
|
| 2018 |
Muchero W, Sondreli KL, Chen JG, Urbanowicz BR, Zhang J, Singan V, Yang Y, Brueggeman RS, Franco-Coronado J, Abraham N, Yang JY, Moremen KW, Weisberg AJ, Chang JH, Lindquist E, et al. Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree. Proceedings of the National Academy of Sciences of the United States of America. PMID 30337484 DOI: 10.1073/Pnas.1804428115 |
0.712 |
|
| 2018 |
Davis EW, Tabima JF, Weisberg AJ, Lopes LD, Wiseman MS, Wiseman MS, Pupko T, Belcher MS, Sechler AJ, Tancos MA, Schroeder BK, Murray TD, Luster DG, Schneider WL, Rogers EE, ... ... Chang JH, et al. Evolution of the U.S. Biological Select Agent Rathayibacter toxicus. Mbio. 9. PMID 30154261 DOI: 10.1128/Mbio.01280-18 |
0.723 |
|
| 2018 |
Lopes LD, Pereira E Silva MC, Weisberg AJ, Davis EW, Yan Q, Varize CS, Wu CF, Chang JH, Loper JE, Andreote FD. Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population. Environmental Microbiology. PMID 30033663 DOI: 10.1111/1462-2920.14363 |
0.695 |
|
| 2018 |
Wu CF, Smith DA, Lai EM, Chang JH. The Agrobacterium Type VI Secretion System: A Contractile Nanomachine for Interbacterial Competition. Current Topics in Microbiology and Immunology. PMID 29992360 DOI: 10.1007/82_2018_99 |
0.415 |
|
| 2018 |
Gimenez-Ibanez S, Hann DR, Chang JH, Segonzac C, Boller T, Rathjen JP. Differential Suppression of Innate Immune Responses by Transiently Expressed Type III Effectors. Frontiers in Plant Science. 9: 688. PMID 29875790 DOI: 10.3389/Fpls.2018.00688 |
0.374 |
|
| 2018 |
Chang JH, Putnam ML, Grünwald NJ, Savory EA, Fuller SL, Weisberg AJ. Response to comments on "Evolutionary transitions between beneficial and phytopathogenic challenge disease management". Elife. 7. PMID 29737968 DOI: 10.7554/Elife.35852 |
0.62 |
|
| 2018 |
Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH. Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. Elife. 7. PMID 29533183 DOI: 10.7554/eLife.36350 |
0.607 |
|
| 2018 |
Yan Q, Lopes LD, Shaffer BT, Kidarsa TA, Vining O, Philmus B, Song C, Stockwell VO, Raaijmakers JM, McPhail KL, Andreote FD, Chang JH, Loper JE. Secondary Metabolism and Interspecific Competition Affect Accumulation of Spontaneous Mutants in the GacS-GacA Regulatory System in Pseudomonas protegens. Mbio. 9. PMID 29339425 DOI: 10.1128/Mbio.01845-17 |
0.322 |
|
| 2017 |
Regus JU, Quides KW, O'Neill MR, Suzuki R, Savory EA, Chang JH, Sachs JL. Cell autonomous sanctions in legumes target ineffective rhizobia in nodules with mixed infections. American Journal of Botany. 104: 1299-1312. PMID 29885243 DOI: 10.3732/Ajb.1700165 |
0.345 |
|
| 2017 |
Savory EA, Fuller SL, Weisberg AJ, Thomas WJ, Gordon MI, Stevens DM, Creason AL, Belcher MS, Serdani M, Wiseman MS, Grünwald NJ, Putnam ML, Chang JH. Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management. Elife. 6. PMID 29231813 DOI: 10.7554/Elife.30925 |
0.753 |
|
| 2017 |
Lopes LD, Davis EW, Pereira E Silva MC, Weisberg AJ, Bresciani L, Chang JH, Loper JE, Andreote FD. Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity. Environmental Microbiology. PMID 29027341 DOI: 10.1111/1462-2920.13957 |
0.721 |
|
| 2017 |
Quides KW, Stomackin GM, Lee HH, Chang JH, Sachs JL. Lotus japonicus alters in planta fitness of Mesorhizobium loti dependent on symbiotic nitrogen fixation. Plos One. 12: e0185568. PMID 28957401 DOI: 10.1371/Journal.Pone.0185568 |
0.377 |
|
| 2017 |
Moore ER, Bullington BS, Weisberg AJ, Jiang Y, Chang J, Halsey KH. Morphological and transcriptomic evidence for ammonium induction of sexual reproduction in Thalassiosira pseudonana and other centric diatoms. Plos One. 12: e0181098. PMID 28686696 DOI: 10.1371/Journal.Pone.0181098 |
0.667 |
|
| 2017 |
Fuller SL, Savory E, Weisberg AJ, Buser JZ, Gordon MI, Putnam M, Chang JH. Isothermal amplification and lateral flow assay for detecting crown gall-causing Agrobacterium spp. Phytopathology. PMID 28569126 DOI: 10.1094/Phyto-04-17-0144-R |
0.662 |
|
| 2017 |
Mellbye BL, Davis EW, Spieck E, Chang JH, Bottomley PJ, Sayavedra-Soto LA. Draft Genome Sequence of Nitrobacter vulgaris Strain Ab1, a Nitrite-Oxidizing Bacterium. Genome Announcements. 5. PMID 28473388 DOI: 10.1128/Genomea.00290-17 |
0.402 |
|
| 2017 |
Yan Q, Philmus B, Chang JH, Loper JE. Novel mechanism of metabolic co-regulation coordinates the biosynthesis of secondary metabolites in Pseudomonas protegens. Elife. 6. PMID 28262092 DOI: 10.7554/Elife.22835 |
0.345 |
|
| 2016 |
Zhuo B, Emerson S, Chang JH, Di Y. Identifying stably expressed genes from multiple RNA-Seq data sets. Peerj. 4: e2791. PMID 28028467 DOI: 10.7717/Peerj.2791 |
0.313 |
|
| 2016 |
Xin XF, Nomura K, Aung K, Velásquez AC, Yao J, Boutrot F, Chang JH, Zipfel C, He SY. Bacteria establish an aqueous living space in plants crucial for virulence. Nature. 539: 524-529. PMID 27882964 DOI: 10.1038/Nature20166 |
0.434 |
|
| 2016 |
Chang JH, Tabima JF. A Covert Operation by a Plant Pathogen. Cell Host & Microbe. 20: 413-415. PMID 27736639 DOI: 10.1016/J.Chom.2016.09.010 |
0.364 |
|
| 2016 |
Tabima JF, Everhart SE, Larsen MM, Weisberg AJ, Kamvar ZN, Tancos MA, Smart CD, Chang JH, Grünwald NJ. Microbe-ID: an open source toolbox for microbial genotyping and species identification. Peerj. 4: e2279. PMID 27602267 DOI: 10.7717/Peerj.2279 |
0.709 |
|
| 2016 |
Davis Ii EW, Weisberg AJ, Tabima JF, Grunwald NJ, Chang JH. Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria. Peerj. 4: e2222. PMID 27547538 DOI: 10.7717/Peerj.2222 |
0.746 |
|
| 2016 |
Shimono M, Lu YJ, Porter K, Kvitko BH, Henty-Ridilla JL, Creason A, He SY, Chang JH, Staiger CJ, Day B. The Pseudomonas syringae type-III effector HopG1 induces actin remodeling to promote symptom development and susceptibility during infection. Plant Physiology. PMID 27217495 DOI: 10.1104/Pp.16.01593 |
0.356 |
|
| 2016 |
Yan Q, Philmus B, Hesse C, Kohen M, Chang JH, Loper JE. The Rare Codon AGA Is Involved in Regulation of Pyoluteorin Biosynthesis in Pseudomonas protegens Pf-5. Frontiers in Microbiology. 7: 497. PMID 27148187 DOI: 10.3389/Fmicb.2016.00497 |
0.441 |
|
| 2016 |
Araujo WL, Creason A, Mano ET, Camargo-Neves AA, Minami SN, Chang J, Loper J. Genome sequencing and transposon mutagenesis of Burkholderia seminalis strain TC3.4.2R3 identify genes contributing to suppression of orchid necrosis caused by B. gladioli. Molecular Plant-Microbe Interactions : Mpmi. PMID 26959838 DOI: 10.1094/Mpmi-02-16-0047-R |
0.466 |
|
| 2015 |
Clifford JC, Buchanan A, Vining O, Kidarsa TA, Chang JH, McPhail KL, Loper JE. Phloroglucinol functions as an intracellular and intercellular chemical messenger influencing gene expression in Pseudomonas protegens. Environmental Microbiology. PMID 26337778 DOI: 10.1111/1462-2920.13043 |
0.366 |
|
| 2015 |
Goyer A, Hamlin L, Crosslin JM, Buchanan A, Chang JH. RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection. Bmc Genomics. 16: 472. PMID 26091899 DOI: 10.1186/S12864-015-1666-2 |
0.349 |
|
| 2015 |
Burkhardt A, Buchanan A, Cumbie JS, Savory EA, Chang JH, Day B. Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis. Molecular Plant-Microbe Interactions : Mpmi. 28: 298-309. PMID 25372122 DOI: 10.1094/Mpmi-09-14-0300-Fi |
0.415 |
|
| 2014 |
Creason AL, Davis EW, Putnam ML, Vandeputte OM, Chang JH. Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus. Frontiers in Plant Science. 5: 406. PMID 25237311 DOI: 10.3389/Fpls.2014.00406 |
0.471 |
|
| 2014 |
Okrent RA, Halgren AB, Azevedo MD, Chang JH, Mills DI, Maselko M, Armstrong DJ, Banowetz GM, Trippe KM. Negative regulation of germination-arrest factor production in Pseudomonas fluorescens WH6 by a putative extracytoplasmic function sigma factor. Microbiology (Reading, England). 160: 2432-42. PMID 25165126 DOI: 10.1099/Mic.0.080317-0 |
0.381 |
|
| 2014 |
Creason AL, Vandeputte OM, Savory EA, Davis EW, Putnam ML, Hu E, Swader-Hines D, Mol A, Baucher M, Prinsen E, Zdanowska M, Givan SA, El Jaziri M, Loper JE, Mahmud T, ... Chang JH, et al. Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci. Plos One. 9: e101996. PMID 25010934 DOI: 10.1371/Journal.Pone.0101996 |
0.512 |
|
| 2014 |
Chang JH, Desveaux D, Creason AL. The ABCs and 123s of bacterial secretion systems in plant pathogenesis. Annual Review of Phytopathology. 52: 317-45. PMID 24906130 DOI: 10.1146/Annurev-Phyto-011014-015624 |
0.349 |
|
| 2014 |
Mucyn TS, Yourstone S, Lind AL, Biswas S, Nishimura MT, Baltrus DA, Cumbie JS, Chang JH, Jones CD, Dangl JL, Grant SR. Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny. Plos Pathogens. 10: e1003807. PMID 24391493 DOI: 10.1371/Journal.Ppat.1003807 |
0.521 |
|
| 2013 |
Kimbrel JA, Chang J, Arp DJ, Sayavedra-Soto LA. The Draft Genome Sequence of Nocardioides sp. Strain CF8 Reveals the Scope of Its Metabolic Capabilities. Genome Announcements. 1. PMID 23833136 DOI: 10.1128/Genomea.00439-13 |
0.397 |
|
| 2013 |
Henty-Ridilla JL, Shimono M, Li J, Chang JH, Day B, Staiger CJ. The plant actin cytoskeleton responds to signals from microbe-associated molecular patterns. Plos Pathogens. 9: e1003290. PMID 23593000 DOI: 10.1371/Journal.Ppat.1003290 |
0.393 |
|
| 2013 |
Kimbrel JA, Thomas WJ, Jiang Y, Creason AL, Thireault CA, Sachs JL, Chang JH. Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum. Plos Pathogens. 9: e1003204. PMID 23468637 DOI: 10.1371/Journal.Ppat.1003204 |
0.493 |
|
| 2012 |
Mi G, Di Y, Emerson S, Cumbie JS, Chang JH. Length bias correction in gene ontology enrichment analysis using logistic regression. Plos One. 7: e46128. PMID 23056249 DOI: 10.1371/Journal.Pone.0046128 |
0.324 |
|
| 2011 |
Kimbrel JA, Di Y, Cumbie JS, Chang JH. RNA-Seq for Plant Pathogenic Bacteria. Genes. 2: 689-705. PMID 24710287 DOI: 10.3390/Genes2040689 |
0.32 |
|
| 2011 |
Sayavedra-Soto LA, Hamamura N, Liu CW, Kimbrel JA, Chang JH, Arp DJ. The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family. Environmental Microbiology Reports. 3: 390-6. PMID 23761285 DOI: 10.1111/J.1758-2229.2010.00239.X |
0.451 |
|
| 2011 |
Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH. GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences. Plos One. 6: e25279. PMID 21998647 DOI: 10.1371/Journal.Pone.0025279 |
0.366 |
|
| 2011 |
Baltrus DA, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, Cherkis K, Roach J, Grant SR, Jones CD, Dangl JL. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. Plos Pathogens. 7: e1002132. PMID 21799664 DOI: 10.1371/Journal.Ppat.1002132 |
0.523 |
|
| 2011 |
Kimbrel JA, Givan SA, Temple TN, Johnson KB, Chang JH. Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics Molecular Plant Pathology. 12: 580-594. PMID 21722296 DOI: 10.1111/J.1364-3703.2010.00694.X |
0.466 |
|
| 2011 |
Nomura K, Mecey C, Lee YN, Imboden LA, Chang JH, He SY. Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 108: 10774-9. PMID 21670267 DOI: 10.1073/Pnas.1103338108 |
0.399 |
|
| 2010 |
Kimbrel JA, Givan SA, Halgren AB, Creason AL, Mills DI, Banowetz GM, Armstrong DJ, Chang JH. An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. Bmc Genomics. 11: 522. PMID 20920191 DOI: 10.1186/1471-2164-11-522 |
0.42 |
|
| 2010 |
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Chang JH, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747 |
0.573 |
|
| 2009 |
Studholme DJ, Ibanez SG, MacLean D, Dangl JL, Chang JH, Rathjen JP. A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528 Bmc Genomics. 10: 395. PMID 19703286 DOI: 10.1186/1471-2164-10-395 |
0.506 |
|
| 2009 |
Thomas WJ, Thireault CA, Kimbrel JA, Chang JH. Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0-1. The Plant Journal : For Cell and Molecular Biology. 60: 919-28. PMID 19682294 DOI: 10.1111/J.1365-313X.2009.03998.X |
0.447 |
|
| 2009 |
Bakker EG, Montgomery B, Nguyen T, Eide K, Chang J, Mockler TC, Liston A, Seabloom EW, Borer ET. Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon. Molecular Ecology. 18: 2588-601. PMID 19457186 DOI: 10.1111/J.1365-294X.2009.04225.X |
0.422 |
|
| 2006 |
Grant SR, Fisher EJ, Chang JH, Mole BM, Dangl JL. Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria. Annual Review of Microbiology. 60: 425-49. PMID 16753033 DOI: 10.1146/Annurev.Micro.60.080805.142251 |
0.395 |
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| 2005 |
Lindeberg M, Stavrinides J, Chang JH, Alfano JR, Collmer A, Dangl JL, Greenberg JT, Mansfield JW, Guttman DS. Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen Pseudomonas syringae. Molecular Plant-Microbe Interactions : Mpmi. 18: 275-82. PMID 15828679 DOI: 10.1094/Mpmi-18-0275 |
0.439 |
|
| 2005 |
Chang JH, Urbach JM, Law TF, Arnold LW, Hu A, Gombar S, Grant SR, Ausubel FM, Dangl JL. A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae. Proceedings of the National Academy of Sciences of the United States of America. 102: 2549-54. PMID 15701698 DOI: 10.1073/Pnas.0409660102 |
0.393 |
|
| 2004 |
Singer AU, Desveaux D, Betts L, Chang JH, Nimchuk Z, Grant SR, Dangl JL, Sondek J. Crystal structures of the type III effector protein AvrPphF and its chaperone reveal residues required for plant pathogenesis. Structure (London, England : 1993). 12: 1669-81. PMID 15341731 DOI: 10.1016/J.Str.2004.06.023 |
0.401 |
|
| 2004 |
Chang JH, Goel AK, Grant SR, Dangl JL. Wake of the flood: ascribing functions to the wave of type III effector proteins of phytopathogenic bacteria. Current Opinion in Microbiology. 7: 11-8. PMID 15036134 DOI: 10.1016/J.Mib.2003.12.006 |
0.452 |
|
| 2002 |
Chang JH, Tai YS, Bernal AJ, Lavelle DT, Staskawicz BJ, Michelmore RW. Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype. Molecular Plant-Microbe Interactions : Mpmi. 15: 281-91. PMID 11952131 DOI: 10.1094/Mpmi.2002.15.3.281 |
0.769 |
|
| 2001 |
Nimchuk Z, Rohmer L, Chang JH, Dangl JL. Knowing the dancer from the dance: R-gene products and their interactions with other proteins from host and pathogen Current Opinion in Plant Biology. 4: 288-294. PMID 11418337 DOI: 10.1016/S1369-5266(00)00175-8 |
0.409 |
|
| 2001 |
Chang JH, Tobias CM, Staskawicz BJ, Michelmore RW. Functional studies of the bacterial avirulence protein AvrPto by mutational analysis Molecular Plant-Microbe Interactions. 14: 451-459. PMID 11310732 DOI: 10.1094/Mpmi.2001.14.4.451 |
0.577 |
|
| 2000 |
Chang JH, Rathjen JP, Bernal AJ, Staskawicz BJ, Michelmore RW. avrPto enhances growth and necrosis caused by Pseudomonas syringae pv. tomato in Tomato lines lacking either Pto or Prf Molecular Plant-Microbe Interactions. 13: 568-571. PMID 10796023 DOI: 10.1094/Mpmi.2000.13.5.568 |
0.611 |
|
| 1999 |
Rathjen JP, Chang JH, Staskawicz BJ, Michelmore RW. Constitutively active Pto induces a Prf-dependent hypersensitive response in the absence of avrPto Embo Journal. 18: 3232-3240. PMID 10369664 DOI: 10.1093/Emboj/18.12.3232 |
0.595 |
|
| 1999 |
Tobias CM, Oldroyd GED, Chang JH, Staskawicz BJ. Plants expressing the Pto disease resistance gene confer resistance to recombinant PVX containing the avirulence gene AvrPto Plant Journal. 17: 41-50. PMID 10069066 DOI: 10.1046/J.1365-313X.1999.00350.X |
0.398 |
|
| 1996 |
Scofield SR, Tobias CM, Rathjen JP, Chang JH, Lavelle DT, Michelmore RW, Staskawicz BJ. Molecular basis of gene-for-gene specificity in bacterial speck disease of tomato Science. 274: 2063-2065. DOI: 10.1126/Science.274.5295.2063 |
0.63 |
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