| Year | Citation | Score | |||
|---|---|---|---|---|---|
| 2019 | Wodak SJ, Paci E, Dokholyan NV, Berezovsky IN, Horovitz A, Li J, Hilser VJ, Bahar I, Karanicolas J, Stock G, Hamm P, Stote RH, Eberhardt J, Chebaro Y, Dejaegere A, et al. Allostery in Its Many Disguises: From Theory to Applications. Structure (London, England : 1993). PMID 30744993 DOI: 10.1016/J.Str.2019.01.003 | 0.441 | |||
| 2017 | Cote Y, Nominé Y, Ramirez J, Hellwig P, Stote RH. Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations. Biophysical Journal. 112: 2575-2588. PMID 28636914 DOI: 10.1016/J.Bpj.2017.05.018 | 0.434 | |||
| 2016 | Voltz K, Léonard J, Touceda PT, Conyard J, Chaker Z, Dejaegere A, Godet J, Mély Y, Haacke S, Stote RH. Quantitative sampling of conformational heterogeneity of a DNA hairpin using molecular dynamics simulations and ultrafast fluorescence spectroscopy. Nucleic Acids Research. 44: 3408-19. PMID 26896800 DOI: 10.1093/Nar/Gkw077 | 0.359 | |||
| 2015 | Gaillard T, Trivella A, Stote RH, Hellwig P. Far infrared spectra of solid state l-serine, l-threonine, l-cysteine, and l-methionine in different protonation states. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 150: 301-7. PMID 26056980 DOI: 10.1016/J.Saa.2015.05.031 | 0.311 | |||
| 2014 | Belorusova AY, Eberhardt J, Potier N, Stote RH, Dejaegere A, Rochel N. Structural insights into the molecular mechanism of vitamin D receptor activation by lithocholic acid involving a new mode of ligand recognition. Journal of Medicinal Chemistry. 57: 4710-9. PMID 24818857 DOI: 10.1021/Jm5002524 | 0.331 | |||
| 2014 | Podjarny A, Blakeley M, Haertlein M, Mitschler A, Cousido-Siah A, Petrova T, Guillot B, Stote R, Moulin M, Howard E. UHR PX and NPC studies of H-FABP water network with tiny perdeuterated crystals Acta Crystallographica Section a Foundations and Advances. 70: C1200-C1200. DOI: 10.1107/S2053273314087993 | 0.388 | |||
| 2013 | Gaillard T, Schwarz BB, Chebaro Y, Stote RH, Dejaegere A. Protein structural statistics with PSS. Journal of Chemical Information and Modeling. 53: 2471-82. PMID 23957210 DOI: 10.1021/Ci400233J | 0.338 | |||
| 2013 | Zanier K, Charbonnier S, Sidi AO, McEwen AG, Ferrario MG, Poussin-Courmontagne P, Cura V, Brimer N, Babah KO, Ansari T, Muller I, Stote RH, Cavarelli J, Vande Pol S, Travé G. Structural basis for hijacking of cellular LxxLL motifs by papillomavirus E6 oncoproteins. Science (New York, N.Y.). 339: 694-8. PMID 23393263 DOI: 10.1126/Science.1229934 | 0.332 | |||
| 2011 | Charbonnier S, Nominé Y, Ramírez J, Luck K, Chapelle A, Stote RH, Travé G, Kieffer B, Atkinson RA. The structural and dynamic response of MAGI-1 PDZ1 with noncanonical domain boundaries to the binding of human papillomavirus E6. Journal of Molecular Biology. 406: 745-63. PMID 21238461 DOI: 10.1016/J.Jmb.2011.01.015 | 0.325 | |||
| 2010 | Grauffel C, Stote RH, Dejaegere A. Force field parameters for the simulation of modified histone tails. Journal of Computational Chemistry. 31: 2434-51. PMID 20652987 DOI: 10.1002/Jcc.21536 | 0.407 | |||
| 2010 | Fidelak J, Ferrer S, Oberlin M, Moras D, Dejaegere A, Stote RH. Dynamic correlation networks in human peroxisome proliferator-activated receptor-γ nuclear receptor protein. European Biophysics Journal : Ebj. 39: 1503-12. PMID 20496064 DOI: 10.1007/S00249-010-0608-9 | 0.332 | |||
| 2010 | Trivella A, Gaillard T, Stote RH, Hellwig P. Far infrared spectra of solid state aliphatic amino acids in different protonation states. The Journal of Chemical Physics. 132: 115105. PMID 20331320 DOI: 10.1063/1.3356027 | 0.363 | |||
| 2009 | Gaillard T, Dejaegere A, Stote RH. Dynamics of beta3 integrin I-like and hybrid domains: insight from simulations on the mechanism of transition between open and closed forms. Proteins. 76: 977-94. PMID 19350618 DOI: 10.1002/Prot.22404 | 0.376 | |||
| 2009 | Moroy G, Martin E, Dejaegere A, Stote RH. Molecular basis for Bcl-2 homology 3 domain recognition in the Bcl-2 protein family: identification of conserved hot spot interactions. The Journal of Biological Chemistry. 284: 17499-511. PMID 19293158 DOI: 10.1074/Jbc.M805542200 | 0.372 | |||
| 2007 | Gaillard T, Martin E, San Sebastian E, Cossío FP, Lopez X, Dejaegere A, Stote RH. Comparative normal mode analysis of LFA-1 integrin I-domains. Journal of Molecular Biology. 374: 231-49. PMID 17919656 DOI: 10.1016/J.Jmb.2007.07.006 | 0.36 | |||
| 2007 | Browning C, Martin E, Loch C, Wurtz JM, Moras D, Stote RH, Dejaegere AP, Billas IM. Critical role of desolvation in the binding of 20-hydroxyecdysone to the ecdysone receptor. The Journal of Biological Chemistry. 282: 32924-34. PMID 17848566 DOI: 10.1074/Jbc.M705559200 | 0.301 | |||
| 2007 | Sebastian ES, Matxain JM, Eriksson LA, Stote RH, Dejaegere A, Cossio FP, Lopez X. Metal ion dependent adhesion sites in integrins: a combined DFT and QMC study on Mn2+. The Journal of Physical Chemistry. B. 111: 9099-103. PMID 17608410 DOI: 10.1021/Jp071065S | 0.383 | |||
| 2007 | Lafont V, Schaefer M, Stote RH, Altschuh D, Dejaegere A. Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". Proteins. 67: 418-34. PMID 17256770 DOI: 10.1002/Prot.21259 | 0.412 | |||
| 2007 | Adelman SA, Ravi R, Muralidhar R, Stote RH. Molecular Theory of Liquid‐Phase Vibrational Energy Relaxation Advances in Chemical Physics. 84: 73-192. DOI: 10.1002/9780470141427.Ch2 | 0.653 | |||
| 2006 | San Sebastian E, Mercero JM, Stote RH, Dejaegere A, Cossío FP, Lopez X. On the affinity regulation of the metal-ion-dependent adhesion sites in integrins. Journal of the American Chemical Society. 128: 3554-63. PMID 16536528 DOI: 10.1021/Ja054142A | 0.309 | |||
| 2004 | Wan S, Stote RH, Karplus M. Calculation of the aqueous solvation energy and entropy, as well as free energy, of simple polar solutes. The Journal of Chemical Physics. 121: 9539-48. PMID 15538876 DOI: 10.1063/1.1789935 | 0.555 | |||
| 2004 | Lagant P, Nolde D, Stote R, Vergoten G, Karplus M. Increasing normal modes analysis accuracy: The SPASIBA spectroscopic force field introduced into the CHARMM program Journal of Physical Chemistry A. 108: 4019-4029. DOI: 10.1021/Jp031178L | 0.471 | |||
| 2004 | Schechner M, Dejaegere AP, Stote RH. Effects of loop conformation on pKa and ligand binding in DNA gyrase B International Journal of Quantum Chemistry. 98: 378-387. DOI: 10.1002/Qua.20073 | 0.355 | |||
| 2002 | Meuwly M, Becker OM, Stote R, Karplus M. NO rebinding to myoglobin: a reactive molecular dynamics study. Biophysical Chemistry. 98: 183-207. PMID 12128198 DOI: 10.1016/S0301-4622(02)00093-5 | 0.658 | |||
| 2001 | Stote RH. Analysis of the RGD sequence in protein structures: comparison to the conformations of the RGDW and D RGDW peptides determined by molecular dynamics simulations Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta). 106: 128-136. DOI: 10.1007/S002140000213 | 0.308 | |||
| 2000 | Martí-Renom MA, Stote RH, Querol E, Aviles FX, Karplus M. Structures of scrambled disulfide forms of the potato carboxypeptidase inhibitor predicted by molecular dynamics simulations with constraints. Proteins. 40: 482-93. PMID 10861940 DOI: 10.1002/1097-0134(20000815)40:3<482::Aid-Prot150>3.0.Co;2-5 | 0.439 | |||
| 2000 | Stote RH, Dejaegere AP, Lefèvre J, Karplus M. Multiple Conformations of RGDW anddRGDW: A Theoretical Study and Comparison with NMR Results The Journal of Physical Chemistry B. 104: 1624-1636. DOI: 10.1021/Jp992147M | 0.51 | |||
| 1999 | Bartels C, Stote RH, Karplus M. Characterization of flexible molecules in solution: the RGDW peptide. Journal of Molecular Biology. 284: 1641-60. PMID 9878376 DOI: 10.1006/Jmbi.1998.2255 | 0.547 | |||
| 1999 | Martí-Renom MA, Stote RH, Querol E, Avilés FX, Karplus M. Refolding of potato carboxypeptidase inhibitor by molecular dynamics simulations with disulfide bond constraints. Journal of Molecular Biology. 284: 145-72. PMID 9811548 DOI: 10.1006/Jmbi.1998.2071 | 0.446 | |||
| 1998 | MacKerell AD, Bashford D, Bellott M, Dunbrack RL, Evanseck JD, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph-McCarthy D, Kuchnir L, Kuczera K, Lau FT, Mattos C, ... ... Stote R, et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. The Journal of Physical Chemistry. B. 102: 3586-616. PMID 24889800 DOI: 10.1021/Jp973084F | 0.521 | |||
| 1996 | Stote RH, Karplus M. Zinc binding in proteins and solution: a simple but accurate nonbonded representation. Proteins. 23: 12-31. PMID 8539245 DOI: 10.1002/Prot.340230104 | 0.598 | |||
| 1996 | Mer G, Dejaegere A, Stote R, Kieffer B, Lefèvre J. Structural Dynamics of PMP-D2: An Experimental and Theoretical Study†,⊥ The Journal of Physical Chemistry. 100: 2667-2674. DOI: 10.1021/Jp9528368 | 0.366 | |||
| 1994 | Mer G, Kellenberger C, Koehl P, Stote R, Sorokine O, Van Dorsselaer A, Luu B, Hietter H, Lefèvre JF. Solution structure of PMP-D2, a 35-residue peptide isolated from the insect Locusta migratoria Biochemistry. 33: 15397-15407. PMID 7803403 DOI: 10.1021/Bi00255A021 | 0.368 | |||
| 1993 | Adelman SA, Muralidhar R, Stote RH. Theory of vibrational energy relaxation in liquids: Vibrational-vibrational energy transfer The Journal of Chemical Physics. 99: 1333-1339. DOI: 10.1063/1.465377 | 0.661 | |||
| 1993 | Adelman SA, Stote RH, Muralidhar R. Theory of vibrational energy relaxation in liquids: Vibrational–translational–rotational energy tranfer Journal of Chemical Physics. 99: 1320-1332. DOI: 10.1063/1.465376 | 0.686 | |||
| 1991 | Adelman SA, Muralidhar R, Stote RH. Time correlation function approach to vibrational energy relaxation in liquids: Revised results for monatomic solvents and a comparison with the isolated binary collision model The Journal of Chemical Physics. 95: 2738-2751. DOI: 10.1063/1.460926 | 0.675 | |||
| 1991 | Stote R, States D, Karplus M. On the treatment of electrostatic interactions in biomolecular simulation Journal De Chimie Physique. 88: 2419-2433. DOI: 10.1063/1.41345 | 0.662 | |||
| 1987 | Stote RH, Adelman SA. Theory of vibrational energy relaxation in liquids: Diatomic solutes in monatomic solvents The Journal of Chemical Physics. 88: 4415-4420. DOI: 10.1063/1.453800 | 0.681 | |||
| 1987 | Adelman SA, Stote RH. Theory of vibrational energy relaxation in liquids: Construction of the generalized Langevin equation for solute vibrational dynamics in monatomic solvents The Journal of Chemical Physics. 88: 4397-4414. DOI: 10.1063/1.453799 | 0.672 | |||
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