Dieter Söll - Publications

Molecular Biophysics and Biochemistry Yale University, New Haven, CT 

216 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tharp JM, Krahn N, Varshney U, Söll D. Hijacking Translation Initiation for Synthetic Biology. Chembiochem : a European Journal of Chemical Biology. PMID 32023356 DOI: 10.1002/cbic.202000017  0.36
2019 Ad O, Hoffman KS, Cairns AG, Featherston AL, Miller SJ, Söll D, Schepartz A. Translation of Diverse Aramid- and 1,3-Dicarbonyl-peptides by Wild Type Ribosomes . Acs Central Science. 5: 1289-1294. PMID 31403077 DOI: 10.1021/acscentsci.9b00460  0.36
2016 Yang A, Ha S, Ahn J, Kim R, Kim S, Lee Y, Kim J, Söll D, Lee HY, Park HS. A chemical biology route to site-specific authentic protein modifications. Science (New York, N.Y.). PMID 27708052 DOI: 10.1126/science.aah4428  0.48
2016 Mukai T, Englert M, Tripp HJ, Miller C, Ivanova NN, Rubin EM, Kyrpides NC, Söll D. [Facile Recoding of Selenocysteine in Nature]. Angewandte Chemie (Weinheim An Der Bergstrasse, Germany). 128: 5423-5427. PMID 27440945 DOI: 10.1002/ange.201511657  0.64
2016 Xiong H, Reynolds NM, Fan C, Englert M, Hoyer D, Miller SJ, Söll D. Dual Genetic Encoding of Acetyl-lysine and Non-deacetylatable Thioacetyl-lysine Mediated by Flexizyme. Angewandte Chemie (International Ed. in English). PMID 26914285 DOI: 10.1002/anie.201511750  1
2016 Ho JM, Reynolds NM, Rivera K, Connolly M, Guo LT, Ling J, Pappin DJ, Church GM, Söll D. Efficient Reassignment of a Frequent Serine Codon in Wild-Type Escherichia coli. Acs Synthetic Biology. 5: 163-71. PMID 26544153 DOI: 10.1021/acssynbio.5b00197  1
2015 Englert M, Nakamura A, Wang YS, Eiler D, Söll D, Guo LT. Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog. Nucleic Acids Research. PMID 26582921 DOI: 10.1093/nar/gkv1255  0.88
2015 Amiram M, Haimovich AD, Fan C, Wang YS, Aerni HR, Ntai I, Moonan DW, Ma NJ, Rovner AJ, Hong SH, Kelleher NL, Goodman AL, Jewett MC, Söll D, Rinehart J, et al. Evolution of translation machinery in recoded bacteria enables multi-site incorporation of nonstandard amino acids. Nature Biotechnology. PMID 26571098 DOI: 10.1038/nbt.3372  1
2015 Ling J, O'Donoghue P, Söll D. Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology. Nature Reviews. Microbiology. 13: 707-21. PMID 26411296 DOI: 10.1038/nrmicro3568  0.68
2015 Lajoie MJ, Söll D, Church GM. Overcoming challenges in engineering the genetic code. Journal of Molecular Biology. PMID 26348789 DOI: 10.1016/j.jmb.2015.09.003  0.64
2015 Fan C, Xiong H, Reynolds NM, Söll D. Rationally evolving tRNAPyl for efficient incorporation of noncanonical amino acids. Nucleic Acids Research. PMID 26250114 DOI: 10.1093/nar/gkv800  1
2015 Miller C, Bröcker MJ, Prat L, Ip K, Chirathivat N, Feiock A, Veszprémi M, Söll D. A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro. Febs Letters. 589: 2194-9. PMID 26160755 DOI: 10.1016/j.febslet.2015.06.039  0.64
2015 Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, Rappsilber J, Rinehart J, Leach D, Söll D, Budisa N. Chemical Evolution of a Bacterial Proteome. Angewandte Chemie (International Ed. in English). 54: 10030-4. PMID 26136259 DOI: 10.1002/anie.201502868  1
2015 Anttonen AK, Hilander T, Linnankivi T, Isohanni P, French RL, Liu Y, Simonović M, Söll D, Somer M, Muth-Pawlak D, Corthals GL, Laari A, Ylikallio E, Lähde M, Valanne L, et al. Selenoprotein biosynthesis defect causes progressive encephalopathy with elevated lactate. Neurology. 85: 306-15. PMID 26115735 DOI: 10.1212/WNL.0000000000001787  1
2015 Polikanov YS, Melnikov SV, Söll D, Steitz TA. Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly. Nature Structural & Molecular Biology. 22: 342-4. PMID 25775268 DOI: 10.1038/nsmb.2992  0.68
2015 Suzuki T, Nakamura A, Kato K, Söll D, Tanaka I, Sheppard K, Yao M. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 112: 382-7. PMID 25548166 DOI: 10.1073/pnas.1423314112  1
2015 Quax TEF, Claassens NJ, Söll D, van der Oost J. Codon Bias as a Means to Fine-Tune Gene Expression Molecular Cell. 59: 149-161. DOI: 10.1016/j.molcel.2015.05.035  1
2015 Miller C, Bröcker MJ, Prat L, Ip K, Chirathivat N, Feiock A, Veszprémi M, Söll D. A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro Febs Letters. 589: 2194-2199. DOI: 10.1016/j.febslet.2015.06.039  1
2014 O'Donoghue P, Prat L, Kucklick M, Schäfer JG, Riedel K, Rinehart J, Söll D, Heinemann IU. Reducing the genetic code induces massive rearrangement of the proteome. Proceedings of the National Academy of Sciences of the United States of America. 111: 17206-11. PMID 25404328 DOI: 10.1073/pnas.1420193111  1
2014 Guo LT, Wang YS, Nakamura A, Eiler D, Kavran JM, Wong M, Kiessling LL, Steitz TA, O'Donoghue P, Söll D. Polyspecific pyrrolysyl-tRNA synthetases from directed evolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 16724-9. PMID 25385624 DOI: 10.1073/pnas.1419737111  0.88
2014 Haruna K, Alkazemi MH, Liu Y, Söll D, Englert M. Engineering the elongation factor Tu for efficient selenoprotein synthesis. Nucleic Acids Research. 42: 9976-83. PMID 25064855 DOI: 10.1093/nar/gku691  0.48
2014 Liu Y, Nakamura A, Nakazawa Y, Asano N, Ford KA, Hohn MJ, Tanaka I, Yao M, Söll D. Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea. Proceedings of the National Academy of Sciences of the United States of America. 111: 10520-5. PMID 25002468 DOI: 10.1073/pnas.1411267111  1
2014 Chavarria NE, Hwang S, Cao S, Fu X, Holman M, Elbanna D, Rodriguez S, Arrington D, Englert M, Uthandi S, Söll D, Maupin-Furlow JA. Archaeal Tuc1/Ncs6 homolog required for wobble uridine tRNA thiolation is associated with ubiquitin-proteasome, translation, and RNA processing system homologs. Plos One. 9: e99104. PMID 24906001 DOI: 10.1371/journal.pone.0099104  1
2014 Fan C, Ho JM, Chirathivat N, Söll D, Wang YS. Exploring the substrate range of wild-type aminoacyl-tRNA synthetases. Chembiochem : a European Journal of Chemical Biology. 15: 1805-9. PMID 24890918 DOI: 10.1002/cbic.201402083  1
2014 Zhang X, Ling J, Barcia G, Jing L, Wu J, Barry BJ, Mochida GH, Hill RS, Weimer JM, Stein Q, Poduri A, Partlow JN, Ville D, Dulac O, Yu TW, et al. Mutations in QARS, encoding glutaminyl-tRNA synthetase, cause progressive microcephaly, cerebral-cerebellar atrophy, and intractable seizures. American Journal of Human Genetics. 94: 547-58. PMID 24656866 DOI: 10.1016/j.ajhg.2014.03.003  1
2014 Liu Y, Long F, Wang L, Söll D, Whitman WB. The putative tRNA 2-thiouridine synthetase Ncs6 is an essential sulfur carrier in Methanococcus maripaludis. Febs Letters. 588: 873-7. PMID 24530533 DOI: 10.1016/j.febslet.2014.01.065  1
2014 Bröcker MJ, Ho JM, Church GM, Söll D, O'Donoghue P. Recoding the genetic code with selenocysteine. Angewandte Chemie (International Ed. in English). 53: 319-23. PMID 24511637  0.68
2014 Itoh Y, Bröcker MJ, Sekine S, Söll D, Yokoyama S. Dimer-dimer interaction of the bacterial selenocysteine synthase SelA promotes functional active-site formation and catalytic specificity. Journal of Molecular Biology. 426: 1723-35. PMID 24456689 DOI: 10.1016/j.jmb.2014.01.003  1
2014 Mandal D, Köhrer C, Su D, Babu IR, Chan CT, Liu Y, Söll D, Blum P, Kuwahara M, Dedon PC, Rajbhandary UL. Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs. Rna (New York, N.Y.). 20: 177-88. PMID 24344322 DOI: 10.1261/rna.042358.113  1
2014 Ling J, Daoud R, Lajoie MJ, Church GM, Söll D, Lang BF. Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria. Nucleic Acids Research. 42: 499-508. PMID 24049072 DOI: 10.1093/nar/gkt842  1
2013 Ko JH, Llopis PM, Heinritz J, Jacobs-Wagner C, Söll D. Suppression of amber codons in Caulobacter crescentus by the orthogonal Escherichia coli histidyl-tRNA synthetase/tRNAHis pair. Plos One. 8: e83630. PMID 24386240 DOI: 10.1371/journal.pone.0083630  0.36
2013 Nakamura A, Nemoto T, Heinemann IU, Yamashita K, Sonoda T, Komoda K, Tanaka I, Söll D, Yao M. Structural basis of reverse nucleotide polymerization. Proceedings of the National Academy of Sciences of the United States of America. 110: 20970-5. PMID 24324136 DOI: 10.1073/pnas.1321312111  0.68
2013 O'Donoghue P, Ling J, Wang YS, Söll D. Upgrading protein synthesis for synthetic biology. Nature Chemical Biology. 9: 594-8. PMID 24045798 DOI: 10.1038/nchembio.1339  1
2013 Englert M, Moses S, Hohn M, Ling J, O'Donoghue P, Söll D. Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases. Febs Letters. 587: 3360-4. PMID 24021645 DOI: 10.1016/j.febslet.2013.08.037  1
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/journal.pbio.1001638  1
2013 Krishnakumar R, Prat L, Aerni HR, Ling J, Merryman C, Glass JI, Rinehart J, Söll D. Transfer RNA misidentification scrambles sense codon recoding. Chembiochem : a European Journal of Chemical Biology. 14: 1967-72. PMID 24000185 DOI: 10.1002/cbic.201300444  1
2013 Ko JH, Wang YS, Nakamura A, Guo LT, Söll D, Umehara T. Pyrrolysyl-tRNA synthetase variants reveal ancestral aminoacylation function. Febs Letters. 587: 3243-8. PMID 23994531 DOI: 10.1016/j.febslet.2013.08.018  1
2013 Itoh Y, Bröcker MJ, Sekine S, Hammond G, Suetsugu S, Söll D, Yokoyama S. Decameric SelA•tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation. Science (New York, N.Y.). 340: 75-8. PMID 23559248 DOI: 10.1126/science.1229521  1
2013 Lee S, Oh S, Yang A, Kim J, Söll D, Lee D, Park HS. A facile strategy for selective incorporation of phosphoserine into histones. Angewandte Chemie (International Ed. in English). 52: 5771-5. PMID 23533151 DOI: 10.1002/anie.201300531  1
2013 Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M. UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proceedings of the National Academy of Sciences of the United States of America. 110: 5540-5. PMID 23509275 DOI: 10.1073/pnas.1303090110  1
2013 Aldag C, Bröcker MJ, Hohn MJ, Prat L, Hammond G, Plummer A, Söll D. Rewiring translation for elongation factor Tu-dependent selenocysteine incorporation. Angewandte Chemie (International Ed. in English). 52: 1441-5. PMID 23193031 DOI: 10.1002/anie.201207567  1
2013 Nakamura A, Nemoto T, Heinemann IU, Yamashita K, Sonoda T, Komoda K, Tanaka I, Söll D, Yao M. Structural basis of reverse nucleotide polymerization Proceedings of the National Academy of Sciences of the United States of America. 110: 20970-20975. DOI: 10.1073/pnas.1321312111  1
2012 Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D. Carbon source-dependent expansion of the genetic code in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 21070-5. PMID 23185002 DOI: 10.1073/pnas.1218613110  0.84
2012 Ling J, Cho C, Guo LT, Aerni HR, Rinehart J, Söll D. Protein aggregation caused by aminoglycoside action is prevented by a hydrogen peroxide scavenger. Molecular Cell. 48: 713-22. PMID 23122414 DOI: 10.1016/j.molcel.2012.10.001  1
2012 O'Donoghue P, Prat L, Heinemann IU, Ling J, Odoi K, Liu WR, Söll D. Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion. Febs Letters. 586: 3931-7. PMID 23036644 DOI: 10.1016/j.febslet.2012.09.033  1
2012 Heinemann IU, Rovner AJ, Aerni HR, Rogulina S, Cheng L, Olds W, Fischer JT, Söll D, Isaacs FJ, Rinehart J. Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion. Febs Letters. 586: 3716-22. PMID 22982858 DOI: 10.1016/j.febslet.2012.08.031  1
2012 Englert M, Xia S, Okada C, Nakamura A, Tanavde V, Yao M, Eom SH, Konigsberg WH, Söll D, Wang J. Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH. Proceedings of the National Academy of Sciences of the United States of America. 109: 15235-40. PMID 22949672 DOI: 10.1073/pnas.1213795109  0.52
2012 Liu Y, Zhu X, Nakamura A, Orlando R, Söll D, Whitman WB. Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis. The Journal of Biological Chemistry. 287: 36683-92. PMID 22904325 DOI: 10.1074/jbc.M112.405688  1
2012 Breaker RR, Conklin DS, Gold L, Söll D, Montimurro JS, Agris PF. RNA science and its applications-a look toward the future: Albany, NY USA, November 3-4, 2011. Rna Biology. 9: 1050-3. PMID 22858674 DOI: 10.4161/rna.21209  0.32
2012 Ling J, Peterson KM, Simonovic I, Söll D, Simonovic M. The mechanism of pre-transfer editing in yeast mitochondrial threonyl-tRNA synthetase. The Journal of Biological Chemistry. 287: 28518-25. PMID 22773845 DOI: 10.1074/jbc.M112.372920  1
2012 Guo LT, Helgadóttir S, Söll D, Ling J. Rational design and directed evolution of a bacterial-type glutaminyl-tRNA synthetase precursor. Nucleic Acids Research. 40: 7967-74. PMID 22661575 DOI: 10.1093/nar/gks507  1
2012 Saha R, Dasgupta S, Banerjee R, Mitra-Bhattacharyya A, Söll D, Basu G, Roy S. A functional loop spanning distant domains of glutaminyl-tRNA synthetase also stabilizes a molten globule state. Biochemistry. 51: 4429-37. PMID 22563625 DOI: 10.1021/bi300221t  1
2012 Ling J, Peterson KM, Simonović I, Cho C, Söll D, Simonović M. Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment. Proceedings of the National Academy of Sciences of the United States of America. 109: 3281-6. PMID 22343532 DOI: 10.1073/pnas.1200109109  1
2012 Su D, Ojo TT, Söll D, Hohn MJ. Selenomodification of tRNA in archaea requires a bipartite rhodanese enzyme. Febs Letters. 586: 717-21. PMID 22293502 DOI: 10.1016/j.febslet.2012.01.024  1
2012 Umehara T, Kim J, Lee S, Guo LT, Söll D, Park HS. N-acetyl lysyl-tRNA synthetases evolved by a CcdB-based selection possess N-acetyl lysine specificity in vitro and in vivo. Febs Letters. 586: 729-33. PMID 22289181 DOI: 10.1016/j.febslet.2012.01.029  1
2012 Liu Y, Dos Santos PC, Zhu X, Orlando R, Dean DR, Söll D, Yuan J. Catalytic mechanism of Sep-tRNA:Cys-tRNA synthase: sulfur transfer is mediated by disulfide and persulfide. The Journal of Biological Chemistry. 287: 5426-33. PMID 22167197 DOI: 10.1074/jbc.M111.313700  0.44
2012 Helgadóttir S, Sinapah S, Söll D, Ling J. Mutational analysis of Sep-tRNA:Cys-tRNA synthase reveals critical residues for tRNA-dependent cysteine formation. Febs Letters. 586: 60-3. PMID 22166682 DOI: 10.1016/j.febslet.2011.11.024  1
2012 Heinemann IU, Nakamura A, O'Donoghue P, Eiler D, Söll D. tRNAHis-guanylyltransferase establishes tRNAHis identity. Nucleic Acids Research. 40: 333-44. PMID 21890903 DOI: 10.1093/nar/gkr696  1
2012 Ling J, Söll D. The genetic code: Yesterday, today, and tomorrow Resonance. 17: 1136-1142. DOI: 10.1007/s12045-012-0130-8  1
2011 O'Donoghue P, Sheppard K, Nureki O, Söll D. Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 108: 20485-90. PMID 22158897 DOI: 10.1073/pnas.1117294108  1
2011 Park HS, Hohn MJ, Umehara T, Guo LT, Osborne EM, Benner J, Noren CJ, Rinehart J, Söll D. Expanding the genetic code of Escherichia coli with phosphoserine. Science (New York, N.Y.). 333: 1151-4. PMID 21868676 DOI: 10.1126/science.1207203  1
2011 Hohn MJ, Palioura S, Su D, Yuan J, Söll D. Genetic analysis of selenocysteine biosynthesis in the archaeon Methanococcus maripaludis. Molecular Microbiology. 81: 249-58. PMID 21564332 DOI: 10.1111/j.1365-2958.2011.07690.x  1
2011 Hebecker S, Arendt W, Heinemann IU, Tiefenau JH, Nimtz M, Rohde M, Söll D, Moser J. Alanyl-phosphatidylglycerol synthase: mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa. Molecular Microbiology. 80: 935-50. PMID 21392131 DOI: 10.1111/j.1365-2958.2011.07621.x  1
2011 Miranda HV, Nembhard N, Su D, Hepowit N, Krause DJ, Pritz JR, Phillips C, Söll D, Maupin-Furlow JA. E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea. Proceedings of the National Academy of Sciences of the United States of America. 108: 4417-22. PMID 21368171 DOI: 10.1073/pnas.1018151108  1
2011 Su D, Lieberman A, Lang BF, Simonovic M, Söll D, Ling J. An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine. Nucleic Acids Research. 39: 4866-74. PMID 21321019 DOI: 10.1093/nar/gkr073  1
2011 Popow J, Englert M, Weitzer S, Schleiffer A, Mierzwa B, Mechtler K, Trowitzsch S, Will CL, Lührmann R, Söll D, Martinez J. HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science (New York, N.Y.). 331: 760-4. PMID 21311021 DOI: 10.1126/science.1197847  1
2011 Englert M, Sheppard K, Aslanian A, Yates JR, Söll D. Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation. Proceedings of the National Academy of Sciences of the United States of America. 108: 1290-5. PMID 21209330 DOI: 10.1073/pnas.1018307108  1
2011 Yuan J, Gogakos T, Babina AM, Söll D, Randau L. Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair. Nucleic Acids Research. 39: 2286-93. PMID 21087993 DOI: 10.1093/nar/gkq1176  1
2011 Sherrer RL, Araiso Y, Aldag C, Ishitani R, Ho JM, Söll D, Nureki O. C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec). Nucleic Acids Research. 39: 1034-41. PMID 20870747 DOI: 10.1093/nar/gkq845  1
2010 Agamy O, Ben Zeev B, Lev D, Marcus B, Fine D, Su D, Narkis G, Ofir R, Hoffmann C, Leshinsky-Silver E, Flusser H, Sivan S, Söll D, Lerman-Sagie T, Birk OS. Mutations disrupting selenocysteine formation cause progressive cerebello-cerebral atrophy. American Journal of Human Genetics. 87: 538-44. PMID 20920667 DOI: 10.1016/j.ajhg.2010.09.007  1
2010 Englert M, Sheppard K, Gundllapalli S, Beier H, Söll D. Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation. Proceedings of the National Academy of Sciences of the United States of America. 107: 16834-9. PMID 20837552 DOI: 10.1073/pnas.1011703107  1
2010 Heinemann IU, Randau L, Tomko RJ, Söll D. 3'-5' tRNAHis guanylyltransferase in bacteria. Febs Letters. 584: 3567-72. PMID 20650272 DOI: 10.1016/j.febslet.2010.07.023  1
2010 Palioura S, Herkel J, Simonović M, Lohse AW, Söll D. Human SepSecS or SLA/LP: selenocysteine formation and autoimmune hepatitis. Biological Chemistry. 391: 771-6. PMID 20623998 DOI: 10.1515/BC.2010.078  1
2010 Nureki O, O'Donoghue P, Watanabe N, Ohmori A, Oshikane H, Araiso Y, Sheppard K, Söll D, Ishitani R. Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation. Nucleic Acids Research. 38: 7286-97. PMID 20601684 DOI: 10.1093/nar/gkq605  1
2010 Ambrogelly A, O'Donoghue P, Söll D, Moses S. A bacterial ortholog of class II lysyl-tRNA synthetase activates lysine. Febs Letters. 584: 3055-60. PMID 20580719 DOI: 10.1016/j.febslet.2010.05.036  1
2010 Yuan J, Hohn MJ, Sherrer RL, Palioura S, Su D, Söll D. A tRNA-dependent cysteine biosynthesis enzyme recognizes the selenocysteine-specific tRNA in Escherichia coli. Febs Letters. 584: 2857-61. PMID 20493852 DOI: 10.1016/j.febslet.2010.05.028  0.84
2010 Rampias T, Sheppard K, Söll D. The archaeal transamidosome for RNA-dependent glutamine biosynthesis. Nucleic Acids Research. 38: 5774-83. PMID 20457752 DOI: 10.1093/nar/gkq336  1
2010 Ling J, Söll D. Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site. Proceedings of the National Academy of Sciences of the United States of America. 107: 4028-33. PMID 20160114 DOI: 10.1073/pnas.1000315107  1
2010 Mandal D, Köhrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Söll D, RajBhandary UL. Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Proceedings of the National Academy of Sciences of the United States of America. 107: 2872-7. PMID 20133752 DOI: 10.1073/pnas.0914869107  1
2010 Nakamura A, Sheppard K, Yamane J, Yao M, Söll D, Tanaka I. Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition. Nucleic Acids Research. 38: 672-82. PMID 19906721 DOI: 10.1093/nar/gkp955  1
2010 Yuan J, O'Donoghue P, Ambrogelly A, Gundllapalli S, Sherrer RL, Palioura S, Simonović M, Söll D. Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems. Febs Letters. 584: 342-9. PMID 19903474 DOI: 10.1016/j.febslet.2009.11.005  1
2010 Heinemann IU, Söll D, Randau L. Transfer RNA processing in archaea: unusual pathways and enzymes. Febs Letters. 584: 303-9. PMID 19878676 DOI: 10.1016/j.febslet.2009.10.067  1
2009 Heinemann IU, O'Donoghue P, Madinger C, Benner J, Randau L, Noren CJ, Söll D. The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 21103-8. PMID 19965368 DOI: 10.1073/pnas.0912072106  1
2009 Araiso Y, Sherrer RL, Ishitani R, Ho JM, Söll D, Nureki O. Structure of a tRNA-dependent kinase essential for selenocysteine decoding. Proceedings of the National Academy of Sciences of the United States of America. 106: 16215-20. PMID 19805283 DOI: 10.1073/pnas.0908861106  1
2009 Alkalaeva E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Söll D, Kisselev L. Translation termination in pyrrolysine-utilizing archaea. Febs Letters. 583: 3455-60. PMID 19796638 DOI: 10.1016/j.febslet.2009.09.044  1
2009 Palioura S, Sherrer RL, Steitz TA, Söll D, Simonovic M. The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation. Science (New York, N.Y.). 325: 321-5. PMID 19608919 DOI: 10.1126/science.1173755  0.84
2009 Mitchell M, Xue S, Erdman R, Randau L, Söll D, Li H. Crystal structure and assembly of the functional Nanoarchaeum equitans tRNA splicing endonuclease. Nucleic Acids Research. 37: 5793-802. PMID 19578064 DOI: 10.1093/nar/gkp537  1
2009 Alfonzo JD, Söll D. Mitochondrial tRNA import--the challenge to understand has just begun. Biological Chemistry. 390: 717-22. PMID 19558325 DOI: 10.1515/BC.2009.101  1
2009 Wu J, Bu W, Sheppard K, Kitabatake M, Kwon ST, Söll D, Smith JL. Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme. Journal of Molecular Biology. 391: 703-16. PMID 19520089 DOI: 10.1016/j.jmb.2009.06.014  1
2009 Randau L, Stanley BJ, Kohlway A, Mechta S, Xiong Y, Söll D. A cytidine deaminase edits C to U in transfer RNAs in Archaea. Science (New York, N.Y.). 324: 657-9. PMID 19407206 DOI: 10.1126/science.1170123  1
2009 Charrière F, O'Donoghue P, Helgadóttir S, Maréchal-Drouard L, Cristodero M, Horn EK, Söll D, Schneider A. Dual targeting of a tRNAAsp requires two different aspartyl-tRNA synthetases in Trypanosoma brucei. The Journal of Biological Chemistry. 284: 16210-7. PMID 19386587 DOI: 10.1074/jbc.M109.005348  1
2009 Aeby E, Palioura S, Pusnik M, Marazzi J, Lieberman A, Ullu E, Söll D, Schneider A. The canonical pathway for selenocysteine insertion is dispensable in Trypanosomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 5088-92. PMID 19279205 DOI: 10.1073/pnas.0901575106  1
2009 Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Söll D, Nureki O. Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality. Nature. 457: 1163-7. PMID 19118381 DOI: 10.1038/nature07611  1
2009 Su D, Hohn MJ, Palioura S, Sherrer RL, Yuan J, Söll D, O'Donoghue P. How an obscure archaeal gene inspired the discovery of selenocysteine biosynthesis in humans. Iubmb Life. 61: 35-9. PMID 18798524 DOI: 10.1002/iub.136  1
2008 Ruan B, Palioura S, Sabina J, Marvin-Guy L, Kochhar S, Larossa RA, Söll D. Quality control despite mistranslation caused by an ambiguous genetic code. Proceedings of the National Academy of Sciences of the United States of America. 105: 16502-7. PMID 18946032 DOI: 10.1073/pnas.0809179105  0.88
2008 Gundllapalli S, Ambrogelly A, Umehara T, Li D, Polycarpo C, Söll D. Misacylation of pyrrolysine tRNA in vitro and in vivo. Febs Letters. 582: 3353-8. PMID 18775710 DOI: 10.1016/j.febslet.2008.08.027  1
2008 Yuan J, Sheppard K, Söll D. Amino acid modifications on tRNA. Acta Biochimica Et Biophysica Sinica. 40: 539-53. PMID 18604446 DOI: 10.1111/j.1745-7270.2008.00435.x  1
2008 Rubio MA, Rinehart JJ, Krett B, Duvezin-Caubet S, Reichert AS, Söll D, Alfonzo JD. Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import. Proceedings of the National Academy of Sciences of the United States of America. 105: 9186-91. PMID 18587046 DOI: 10.1073/pnas.0804283105  1
2008 Randau L, Söll D. Transfer RNA genes in pieces. Embo Reports. 9: 623-8. PMID 18552771 DOI: 10.1038/embor.2008.101  1
2008 Randau L, Schröder I, Söll D. Life without RNase P. Nature. 453: 120-3. PMID 18451863 DOI: 10.1038/nature06833  1
2008 RajBhandary UL, Söll D. Aminoacyl-tRNAs, the bacterial cell envelope, and antibiotics. Proceedings of the National Academy of Sciences of the United States of America. 105: 5285-6. PMID 18385375 DOI: 10.1073/pnas.0801193105  1
2008 Sheppard K, Sherrer RL, Söll D. Methanothermobacter thermautotrophicus tRNA Gln confines the amidotransferase GatCAB to asparaginyl-tRNA Asn formation. Journal of Molecular Biology. 377: 845-53. PMID 18291416 DOI: 10.1016/j.jmb.2008.01.064  1
2008 Sheppard K, Söll D. On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE. Journal of Molecular Biology. 377: 831-44. PMID 18279892 DOI: 10.1016/j.jmb.2008.01.016  1
2008 Sherrer RL, Ho JM, Söll D. Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O-phosphoseryl-tRNASec kinase. Nucleic Acids Research. 36: 1871-80. PMID 18267971 DOI: 10.1093/nar/gkn036  1
2008 Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Söll D. From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucleic Acids Research. 36: 1813-25. PMID 18252769 DOI: 10.1093/nar/gkn015  1
2008 Sheppard K, Akochy PM, Söll D. Assays for transfer RNA-dependent amino acid biosynthesis. Methods (San Diego, Calif.). 44: 139-45. PMID 18241795 DOI: 10.1016/j.ymeth.2007.06.010  1
2008 Hendrickson EL, Liu Y, Rosas-Sandoval G, Porat I, Söll D, Whitman WB, Leigh JA. Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. Journal of Bacteriology. 190: 2198-205. PMID 18203827 DOI: 10.1128/JB.01805-07  1
2008 Sherrer RL, O'Donoghue P, Söll D. Characterization and evolutionary history of an archaeal kinase involved in selenocysteinyl-tRNA formation. Nucleic Acids Research. 36: 1247-59. PMID 18174226 DOI: 10.1093/nar/gkm1134  1
2008 Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane H, Domae N, Defranco J, Söll D, Nureki O. Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation. Nucleic Acids Research. 36: 1187-99. PMID 18158303 DOI: 10.1093/nar/gkm1122  1
2008 Randau L, Söll D. Response by Lennart Randau & Dieter Söll Embo Reports. 9: 820-821. DOI: 10.1038/embor.2008.154  1
2007 Söll D. The genetic code revisited--four decades after Francis Crick. Nucleic Acids Symposium Series (2004). 13-4. PMID 18029562 DOI: 10.1093/nass/nrm007  1
2007 Namy O, Zhou Y, Gundllapalli S, Polycarpo CR, Denise A, Rousset JP, Söll D, Ambrogelly A. Adding pyrrolysine to the Escherichia coli genetic code. Febs Letters. 581: 5282-8. PMID 17967457 DOI: 10.1016/j.febslet.2007.10.022  1
2007 Levengood JD, Roy H, Ishitani R, Söll D, Nureki O, Ibba M. Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase. Biochemistry. 46: 11033-8. PMID 17760422 DOI: 10.1021/bi700815a  1
2007 Kavran JM, Gundllapalli S, O'Donoghue P, Englert M, Söll D, Steitz TA. Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation. Proceedings of the National Academy of Sciences of the United States of America. 104: 11268-73. PMID 17592110 DOI: 10.1073/pnas.0704769104  0.6
2007 Herring S, Ambrogelly A, Gundllapalli S, O'Donoghue P, Polycarpo CR, Söll D. The amino-terminal domain of pyrrolysyl-tRNA synthetase is dispensable in vitro but required for in vivo activity Febs Letters. 581: 3197-3203. PMID 17582401 DOI: 10.1016/j.febslet.2007.06.004  1
2007 Ambrogelly A, Gundllapalli S, Herring S, Polycarpo C, Frauer C, Söll D. Pyrrolysine is not hardwired for cotranslational insertion at UAG codons Proceedings of the National Academy of Sciences of the United States of America. 104: 3141-3146. PMID 17360621 DOI: 10.1073/pnas.0611634104  1
2007 Sheppard K, Akochy PM, Salazar JC, Söll D. The Helicobacter pylori amidotransferase GatCAB is equally efficient in glutamine-dependent transamidation of Asp-tRNAAsn and Glu-tRNAGln. The Journal of Biological Chemistry. 282: 11866-73. PMID 17329242 DOI: 10.1074/jbc.M700398200  1
2007 Kamtekar S, Hohn MJ, Park HS, Schnitzbauer M, Sauerwald A, Söll D, Steitz TA. Toward understanding phosphoseryl-tRNACys formation: the crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 104: 2620-5. PMID 17301225 DOI: 10.1073/pnas.0611504104  0.6
2007 Herring S, Ambrogelly A, Polycarpo CR, Söll D. Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase Nucleic Acids Research. 35: 1270-1278. PMID 17267409 DOI: 10.1093/nar/gkl1151  1
2007 Namgoong S, Sheppard K, Sherrer RL, Söll D. Co-evolution of the archaeal tRNA-dependent amidotransferase GatCAB with tRNA(Asn). Febs Letters. 581: 309-14. PMID 17214986 DOI: 10.1016/j.febslet.2006.12.033  1
2007 Ambrogelly A, Palioura S, Söll D. Natural expansion of the genetic code. Nature Chemical Biology. 3: 29-35. PMID 17173027 DOI: 10.1038/nchembio847  1
2007 Helgadóttir S, Rosas-Sandoval G, Söll D, Graham DE. Biosynthesis of phosphoserine in the Methanococcales Journal of Bacteriology. 189: 575-582. PMID 17071763 DOI: 10.1128/JB.01269-06  1
2007 Ambrogelly A, Salazar JC, Sheppard K, Polycarpo C, Oshikane H, Nakamura Y, Fukai S, Nureki O, Söll D. Aminoacyl-tRNAs: Deciphering and Defining the Genetic Message Archaea: Evolution, Physiology, and Molecular Biology. 207-215. DOI: 10.1002/9780470750865.ch18  1
2006 Söll D, RajBhandary UL. The genetic code - thawing the 'frozen accident'. Journal of Biosciences. 31: 459-63. PMID 17206066 DOI: 10.1007/BF02705185  1
2006 Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM, Whitman WB, Söll D. RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea. Proceedings of the National Academy of Sciences of the United States of America. 103: 18923-7. PMID 17142313 DOI: 10.1073/pnas.0609703104  1
2006 Polycarpo CR, Herring S, Bérubé A, Wood JL, Söll D, Ambrogelly A. Pyrrolysine analogues as substrates for pyrrolysyl-tRNA synthetase. Febs Letters. 580: 6695-700. PMID 17126325 DOI: 10.1016/j.febslet.2006.11.028  1
2006 Hohn MJ, Park HS, O'Donoghue P, Schnitzbauer M, Söll D. Emergence of the universal genetic code imprinted in an RNA record Proceedings of the National Academy of Sciences of the United States of America. 103: 18095-18100. PMID 17110438 DOI: 10.1073/pnas.0608762103  1
2006 Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Söll D, Nureki O. Structural basis of RNA-dependent recruitment of glutamine to the genetic code. Science (New York, N.Y.). 312: 1950-4. PMID 16809540 DOI: 10.1126/science.1128470  1
2006 Bilokapic S, Maier T, Ahel D, Gruic-Sovulj I, Söll D, Weygand-Durasevic I, Ban N. Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition Embo Journal. 25: 2498-2509. PMID 16675947 DOI: 10.1038/sj.emboj.7601129  1
2006 Charrière F, Helgadóttir S, Horn EK, Söll D, Schneider A. Dual targeting of a single tRNATrp requires two different tryptophanyl-tRNA synthesis in Typanosoma brucei Proceedings of the National Academy of Sciences of the United States of America. 103: 6847-6852. PMID 16636268 DOI: 10.1073/pnas.0602362103  1
2006 Choi JJ, Nam KH, Min B, Kim SJ, Söll D, Kwon ST. Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans Journal of Molecular Biology. 356: 1093-1106. PMID 16412462 DOI: 10.1016/j.jmb.2005.12.036  1
2006 Sabina J, Söll D. The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine formation. The Journal of Biological Chemistry. 281: 6993-7001. PMID 16407303 DOI: 10.1074/jbc.M512841200  1
2006 Cardoso AM, Polycarpo C, Martins OB, Söll D. A non-discriminating aspartyl-tRNA synthetase from Halobacterium salinarum Rna Biology. 3: e1-e5.  1
2005 Randau L, Calvin K, Hall M, Yuan J, Podar M, Li H, Söll D. The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves. Proceedings of the National Academy of Sciences of the United States of America. 102: 17934-9. PMID 16330750 DOI: 10.1073/pnas.0509197102  1
2005 Levicán G, Katz A, Valenzuela P, Söll D, Orellana O. A tRNA(Glu) that uncouples protein and tetrapyrrole biosynthesis. Febs Letters. 579: 6383-7. PMID 16271718 DOI: 10.1016/j.febslet.2005.09.100  1
2005 Ambrogelly A, Kamtekar S, Stathopoulos C, Kennedy D, Söll D. Asymmetric behavior of archaeal prolyl-tRNA synthetase Febs Letters. 579: 6017-6022. PMID 16226256 DOI: 10.1016/j.febslet.2005.09.025  1
2005 Ahel D, Slade D, Mocibob M, Söll D, Weygand-Durasevic I. Selective inhibition of divergent seryl-tRNA synthetases by serine analogues Febs Letters. 579: 4344-4348. PMID 16054140 DOI: 10.1016/j.febslet.2005.06.073  1
2005 Sauerwald A, Sitaramaiah D, McCloskey JA, Söll D, Crain PF. N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA. Febs Letters. 579: 2807-10. PMID 15907485 DOI: 10.1016/j.febslet.2005.04.014  1
2005 Randau L, Pearson M, Söll D. The complete set of tRNA species in Nanoarchaeum equitans. Febs Letters. 579: 2945-7. PMID 15893316 DOI: 10.1016/j.febslet.2005.04.051  1
2005 Ambrogelly A, Frugier M, Ibba M, Söll D, Giegé R. Transfer RNA recognition by class I lysyl-tRNA synthetase from the Lyme disease pathogen Borrelia burgdorferi. Febs Letters. 579: 2629-34. PMID 15862301 DOI: 10.1016/j.febslet.2005.04.001  1
2005 Sauerwald A, Zhu W, Major TA, Roy H, Palioura S, Jahn D, Whitman WB, Yates JR, Ibba M, Söll D. RNA-dependent cysteine biosynthesis in archaea. Science (New York, N.Y.). 307: 1969-72. PMID 15790858 DOI: 10.1126/science.1108329  1
2005 Rinehart J, Krett B, Rubio MA, Alfonzo JD, Söll D. Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion. Genes & Development. 19: 583-92. PMID 15706032 DOI: 10.1101/gad.1269305  1
2005 Randau L, Münch R, Hohn MJ, Jahn D, Söll D. Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves. Nature. 433: 537-41. PMID 15690044 DOI: 10.1038/nature03233  1
2005 Feng L, Sheppard K, Tumbula-Hansen D, Söll D. Gln-tRNAGln formation from Glu-tRNAGln requires cooperation of an asparaginase and a Glu-tRNAGln kinase. The Journal of Biological Chemistry. 280: 8150-5. PMID 15611111 DOI: 10.1074/jbc.M411098200  1
2005 Ruan B, Bovee ML, Sacher M, Stathopoulos C, Poralla K, Francklyn CS, Söll D. A unique hydrophobic cluster near the active site contributes to differences in borrelidin inhibition among threonyl-tRNA synthetases. The Journal of Biological Chemistry. 280: 571-7. PMID 15507440 DOI: 10.1074/jbc.M411039200  1
2004 Feng L, Sheppard K, Namgoong S, Ambrogelly A, Polycarpo C, Randau L, Tumbula-Hansen D, Söll D. Aminoacyl-tRNA synthesis by pre-translational amino acid modification. Rna Biology. 1: 16-20. PMID 17194933  1
2004 Baick JW, Yoon JH, Namgoong S, Söll D, Kim SI, Eom SH, Hong KW. Growth inhibition of Escherichia coli during heterologous expression of Bacillus subtilis glutamyl-tRNA synthetase that catalyzes the formation of mischarged glutamyl-tRNA1 Gln. Journal of Microbiology (Seoul, Korea). 42: 111-6. PMID 15357304  1
2004 Polycarpo C, Ambrogelly A, Bérubé A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Söll D. An aminoacyl-tRNA synthetase that specifically activates pyrrolysine. Proceedings of the National Academy of Sciences of the United States of America. 101: 12450-4. PMID 15314242 DOI: 10.1073/pnas.0405362101  1
2004 Korencic D, Ahel I, Schelert J, Sacher M, Ruan B, Stathopoulos C, Blum P, Ibba M, Söll D. A freestanding proofreading domain is required for protein synthesis quality control in Archaea. Proceedings of the National Academy of Sciences of the United States of America. 101: 10260-5. PMID 15240874 DOI: 10.1073/pnas.0403926101  1
2004 Randau L, Schauer S, Ambrogelly A, Salazar JC, Moser J, Sekine S, Yokoyama S, Söll D, Jahn D. tRNA recognition by glutamyl-tRNA reductase. The Journal of Biological Chemistry. 279: 34931-7. PMID 15194701 DOI: 10.1074/jbc.M401529200  1
2004 Salazar JC, Ambrogelly A, Crain PF, McCloskey JA, Söll D. A truncated aminoacyl-tRNA synthetase modifies RNA. Proceedings of the National Academy of Sciences of the United States of America. 101: 7536-41. PMID 15096612 DOI: 10.1073/pnas.0401982101  1
2004 Ibba M, Söll D. Aminoacyl-tRNAs: setting the limits of the genetic code. Genes & Development. 18: 731-8. PMID 15082526 DOI: 10.1101/gad.1187404  1
2004 Ruan B, Nakano H, Tanaka M, Mills JA, DeVito JA, Min B, Low KB, Battista JR, Söll D. Cysteinyl-tRNA(Cys) formation in Methanocaldococcus jannaschii: the mechanism is still unknown. Journal of Bacteriology. 186: 8-14. PMID 14679218 DOI: 10.1128/JB.186.1.8-14.2004  1
2004 Rinehart J, Horn EK, Wei D, Soll D, Schneider A. Non-canonical eukaryotic glutaminyl- and glutamyl-tRNA synthetases form mitochondrial aminoacyl-tRNA in Trypanosoma brucei. The Journal of Biological Chemistry. 279: 1161-6. PMID 14563839 DOI: 10.1074/jbc.M310100200  1
2003 Ahel I, Korencic D, Ibba M, Söll D. Trans-editing of mischarged tRNAs. Proceedings of the National Academy of Sciences of the United States of America. 100: 15422-7. PMID 14663147 DOI: 10.1073/pnas.2136934100  1
2003 Salazar JC, Ahel I, Orellana O, Tumbula-Hansen D, Krieger R, Daniels L, Söll D. Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates. Proceedings of the National Academy of Sciences of the United States of America. 100: 13863-8. PMID 14615592 DOI: 10.1073/pnas.1936123100  1
2003 Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proceedings of the National Academy of Sciences of the United States of America. 100: 12984-8. PMID 14566062 DOI: 10.1073/pnas.1735403100  1
2003 Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Söll D. Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases. Molecular Cell. 12: 287-94. PMID 14536069 DOI: 10.1016/S1097-2765(03)00280-6  1
2003 Sabina J, Dover N, Templeton LJ, Smulski DR, Söll D, LaRossa RA. Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12. Journal of Bacteriology. 185: 6158-70. PMID 14526028 DOI: 10.1128/JB.185.20.6158-6170.2003  1
2003 Feng L, Tumbula-Hansen D, Toogood H, Soll D. Expanding tRNA recognition of a tRNA synthetase by a single amino acid change. Proceedings of the National Academy of Sciences of the United States of America. 100: 5676-81. PMID 12730374 DOI: 10.1073/pnas.0631525100  1
2003 Kamtekar S, Kennedy WD, Wang J, Stathopoulos C, Söll D, Steitz TA. The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases. Proceedings of the National Academy of Sciences of the United States of America. 100: 1673-8. PMID 12578991 DOI: 10.1073/pnas.0437911100  1
2002 Rosas-Sandoval G, Ambrogelly A, Rinehart J, Wei D, Cruz-Vera LR, Graham DE, Stetter KO, Guarneros G, Söll D. Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast. Proceedings of the National Academy of Sciences of the United States of America. 99: 16707-12. PMID 12475929 DOI: 10.1073/pnas.222659199  1
2002 Schauer S, Chaturvedi S, Randau L, Moser J, Kitabatake M, Lorenz S, Verkamp E, Schubert WD, Nakayashiki T, Murai M, Wall K, Thomann HU, Heinz DW, Inokuchi H, Söll D, et al. Escherichia coli glutamyl-tRNA reductase. Trapping the thioester intermediate. The Journal of Biological Chemistry. 277: 48657-63. PMID 12370189 DOI: 10.1074/jbc.M206924200  1
2002 Ambrogelly A, Ahel I, Polycarpo C, Bunjun-Srihari S, Krett B, Jacquin-Becker C, Ruan B, Köhrer C, Stathopoulos C, RajBhandary UL, Söll D. Methanocaldococcus jannaschii prolyl-tRNA synthetase charges tRNA(Pro) with cysteine. The Journal of Biological Chemistry. 277: 34749-54. PMID 12130658 DOI: 10.1074/jbc.M206929200  1
2002 Ibba M, Söll D. Genetic code: introducing pyrrolysine. Current Biology : Cb. 12: R464-6. PMID 12121639 DOI: 10.1016/S0960-9822(02)00947-8  1
2002 Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Söll D, Yokoyama S. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies. Nature Structural Biology. 9: 257-62. PMID 11887185 DOI: 10.1038/nsb777  1
2002 Min B, Pelaschier JT, Graham DE, Tumbula-Hansen D, Söll D. Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation. Proceedings of the National Academy of Sciences of the United States of America. 99: 2678-83. PMID 11880622 DOI: 10.1073/pnas.012027399  1
2001 Stathopoulos C, Ahel I, Ali K, Ambrogelly A, Becker H, Bunjun S, Feng L, Herring S, Jacquin-Becker C, Kobayashi H, Korencic D, Krett B, Mejlhede N, Min B, Nakano H, et al. Aminoacyl-tRNA synthesis: a postgenomic perspective. Cold Spring Harbor Symposia On Quantitative Biology. 66: 175-83. PMID 12762020  1
2001 Ruan B, Ahel I, Ambrogelly A, Becker HD, Bunjun S, Feng L, Tumbula-Hansen D, Ibba M, Korencic D, Kobayashi H, Jacquin-Becker C, Mejlhede N, Min B, Raczniak G, Rinehart J, et al. Genomics and the evolution of aminoacyl-tRNA synthesis. Acta Biochimica Polonica. 48: 313-21. PMID 11732603  1
2001 Stathopoulos C, Kim W, Li T, Anderson I, Deutsch B, Palioura S, Whitman W, Söll D. Cysteinyl-tRNA synthetase is not essential for viability of the archaeon Methanococcus maripaludis. Proceedings of the National Academy of Sciences of the United States of America. 98: 14292-7. PMID 11717392 DOI: 10.1073/pnas.201540498  1
2001 McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Research. 29: 4699-706. PMID 11713320  1
2001 Ibba M, Stathopoulos C, Söll D. Protein synthesis: Twenty three amino acids and counting Current Biology. 11. PMID 11509255 DOI: 10.1016/S0960-9822(01)00344-X  1
2001 Ibba M, Söll D. The renaissance of aminoacyl-tRNA synthesis Embo Reports. 2: 382-387. PMID 11375928  1
2001 Raczniak G, Ibba M, Söll D. Genomics-based identification of targets in pathogenic bacteria for potential therapeutic and diagnostic use Toxicology. 160: 181-189. PMID 11246138 DOI: 10.1016/S0300-483X(00)00454-6  1
2000 Söll D, Becker HD, Plateau P, Blanquet S, Ibba M. Context-dependent anticodon recognition by class I lysyl-tRNA synthetases Proceedings of the National Academy of Sciences of the United States of America. 97: 14224-14228. PMID 11121028 DOI: 10.1073/pnas.97.26.14224  1
2000 Praetorius-Ibba M, Stange-Thomann N, Kitabatake M, Ali K, Söll I, Carter CW, Ibba M, Söll D. Ancient adaptation of the active site of tryptophanyl-tRNA synthetase for tryptophan binding. Biochemistry. 39: 13136-43. PMID 11052665 DOI: 10.1021/bi001512t  1
2000 Ibba M, Soll D. Aminoacyl-tRNA synthesis. Annual Review of Biochemistry. 69: 617-50. PMID 10966471 DOI: 10.1146/annurev.biochem.69.1.617  1
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Soll D. Author correction Trends in Biochemical Sciences. 25: 380. PMID 10916157  1
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Söll D. The Adaptor hypothesis revisited Trends in Biochemical Sciences. 25: 311-316. PMID 10871880 DOI: 10.1016/S0968-0004(00)01600-5  1
2000 Woese CR, Olsen GJ, Ibba M, Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiology and Molecular Biology Reviews : Mmbr. 64: 202-36. PMID 10704480 DOI: 10.1128/MMBR.64.1.202-236.2000  1
2000 Stathopoulos C, Li T, Longman R, Vothknecht UC, Becker HD, Ibba M, Söll D. One polypeptide with two aminoacyl-tRNA synthetase activities Science. 287: 479-482. PMID 10642548 DOI: 10.1126/science.287.5452.479  1
1999 Deruère J, Jackson K, Garbers C, Söll D, Delong A. The RCN1-encoded A subunit of protein phosphatase 2A increases phosphatase activity in vivo. The Plant Journal : For Cell and Molecular Biology. 20: 389-99. PMID 10607292 DOI: 10.1046/j.1365-313X.1999.00607.x  1
1999 Ibba M, Söll D. Quality control mechanisms during translation Science. 286: 1893-1897. PMID 10583945 DOI: 10.1126/science.286.5446.1893  1
1999 Ibba M, Sever S, Praetorius-Ibba M, Söll D. Transfer RNA identity contributes to transition state stabilization during aminoacyl-tRNA synthesis. Nucleic Acids Research. 27: 3631-7. PMID 10471730 DOI: 10.1093/nar/27.18.3631  1
1999 Tumbula D, Vothknecht UC, Kim HS, Ibba M, Min B, Li T, Pelaschier J, Stathopoulos C, Becker H, Söll D. Archaeal aminoacyl-tRNA synthesis: Diversity replaces dogma Genetics. 152: 1269-1276. PMID 10430557  1
1999 Ibba M, Curnow AW, Bono J, Rosa PA, Woese CR, Söll D. Archaeal aminoacyl-tRNA synthesis: unique determinants of a universal genetic code? The Biological Bulletin. 196: 335-6; discussion 33. PMID 10390832  1
1999 Ibba M, Losey HC, Kawarabayasi Y, Kikuchi H, Bunjun S, Söll D. Substrate recognition by class I lysyl-tRNA synthetases: a molecular basis for gene displacement. Proceedings of the National Academy of Sciences of the United States of America. 96: 418-23. PMID 9892648 DOI: 10.1073/pnas.96.2.418  1
1998 Curnow AW, Tumbula DL, Pelaschier JT, Min B, Söll D. Glutamyl-tRNA(Gln) amidotransferase in Deinococcus radiodurans may be confined to asparagine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 95: 12838-43. PMID 9789001 DOI: 10.1073/pnas.95.22.12838  1
1998 Hong KW, Ibba M, Söll D. Retracing the evolution of amino acid specificity in glutaminyl-tRNA synthetase Febs Letters. 434: 149-154. PMID 9738468 DOI: 10.1016/S0014-5793(98)00968-5  1
1998 Liu J, Ibba M, Hong KW, Söll D. The terminal adenosine of tRNA(Gln) mediates tRNA-dependent amine acid recognition by glutaminyl-tRNA synthetase Biochemistry. 37: 9836-9842. PMID 9657697 DOI: 10.1021/bi980704+  1
1997 Ibba M, Celic I, Curnow A, Kim H, Pelaschier J, Tumbula D, Vothknecht U, Woese C, Söll D. Aminoacyl-tRNA synthesis in Archaea. Nucleic Acids Symposium Series. 305-6. PMID 9586121  1
1997 Ibba M, Bono JL, Rosa PA, Söll D. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi Proceedings of the National Academy of Sciences of the United States of America. 94: 14383-14388. PMID 9405621 DOI: 10.1073/pnas.94.26.14383  1
1997 Freist W, Gauss DH, Ibba M, Söll D. Glutaminyl-tRNA synthetase. Biological Chemistry. 378: 1103-17. PMID 9372179  1
1997 Ibba M, Morgan S, Curnow AW, Pridmore DR, Vothknecht UC, Gardner W, Lin W, Woese CR, Söll D. A euryarchaeal lysyl-tRNA synthetase: resemblance to class I synthetases. Science (New York, N.Y.). 278: 1119-22. PMID 9353192 DOI: 10.1126/science.278.5340.1119  1
1997 Ibba M, Curnow AW, Söll D. Aminoacyl-tRNA synthesis: divergent routes to a common goal. Trends in Biochemical Sciences. 22: 39-42. PMID 9048478 DOI: 10.1016/S0968-0004(96)20033-7  1
1996 Thomann' HU, Ibba M, Hong KW, Soil D. Homologous expression and purification of mutants of an essential protein by reverse epitope-tagging Bio/Technology. 14: 50-55. PMID 9636312 DOI: 10.1038/nbt0196-50  0.84
1996 Ibba M, Hong KW, Söll D. Glutaminyl-tRNA synthetase: From genetics to molecular recognition Genes to Cells. 1: 421-427. PMID 9078373  1
1996 Kitabatake M, Ibba M, Hong KW, Söll D, Inokuchi H. Genetic analysis of functional connectivity between substrate recognition domains of Escherichia coli glutaminyl-tRNA synthetase Molecular and General Genetics. 252: 717-722. PMID 8917315 DOI: 10.1007/s004380050281  1
1996 Curnow AW, Ibba M, Söll D. tRNA-dependent asparagine formation. Nature. 382: 589-90. PMID 8757127 DOI: 10.1038/382589b0  1
1996 Ibba M, Hong KW, Sherman JM, Sever S, Söll D. Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme. Proceedings of the National Academy of Sciences of the United States of America. 93: 6953-8. PMID 8692925 DOI: 10.1073/pnas.93.14.6953  1
1996 Ibba M, Soll D. Protein-RNA molecular recognition [7] Nature. 381: 656. PMID 8649510 DOI: 10.1038/381656a0  1
1996 Hong KW, Ibba M, Weygand-Duraševic I, Rogers MJ, Thomann HU, Söll D. Transfer RNA-dependent cognate amino acid recognition by an aminoacyl-tRNA synthetase Embo Journal. 15: 1983-1991. PMID 8617245  1
1996 Sever S, Rogers K, Rogers MJ, Carter C, Söll D. Escherichia coli tryptophanyl-tRNA synthetase mutants selected for tryptophan auxotrophy implicate the dimer interface in optimizing amino acid binding. Biochemistry. 35: 32-40. PMID 8555191 DOI: 10.1021/bi952103d  1
1995 Ibba M, Thomann HU, Hong KW, Sherman JM, Weygand-Durasevic I, Sever S, Stange-Thomann N, Praetorius M, Söll D. Substrate selection by aminoacyl-tRNA synthetases. Nucleic Acids Symposium Series. 40-2. PMID 8643392  1
1995 Lloyd AJ, Thomann Hu, Ibba M, Soöll D. A broadly applicable continuous spectrophotometric assay for measuring aminoacyl-tRNA synthetase activity Nucleic Acids Research. 23: 2886-2892. PMID 7659511 DOI: 10.1093/nar/23.15.2886  0.52
1985 Pearson D, Willis I, Hottinger H, Bell J, Kumar A, Leupold U, Söll D. Mutations preventing expression of sup3 tRNASer nonsense suppressors of Schizosaccharomyces pombe. Molecular and Cellular Biology. 5: 808-15. PMID 3921825 DOI: 10.1128/MCB.5.4.808  1
1983 Sharp S, Dingermann T, Schaack J, Sharp JA, Burke DJ, Derobertis EM, Söll D. Each element of the Drosophila tRNAArg gene split promoter directs transcription in Xenopus oocytes Nucleic Acids Research. 11: 8677-8690. PMID 6561520 DOI: 10.1093/nar/11.24.8677  1
1983 Sharp S, Cooley L, DeFranco D, Dingermann T, Söll D. Organization and expression of tRNA genes in Drosophila melanogaster Recent Results in Cancer Research. Fortschritte Der Krebsforschung. Progres Dans Les Recherches Sur Le Cancer. 84: 1-14. PMID 6405456 DOI: 10.1007/978-3-642-81947-6_1  1
1968 Petit JF, Strominger JL, Söll D. Biosynthesis of the peptidoglycan of bacterial cell walls. VII. Incorporation of serine and glycine into interpeptide bridges in Staphylococcus epidermidis. The Journal of Biological Chemistry. 243: 757-67. PMID 5638592  1
1968 Roberts WS, Strominger JL, Söll D. Biosynthesis of the peptidoglycan of bacterial cell walls. VI. Incorporation of L-threonine into interpeptide bridges in Micrococcus roseus. The Journal of Biological Chemistry. 243: 749-56. PMID 5638591  1
1968 Bumsted RM, Dahl JL, Söll D, Strominger JL. Biosynthesis of the peptidoglycan of bacterial cell walls. X. Further study of the glycyl transfer ribonucleic acids active in peptidoglycan synthesis in Staphylococcus aureus. The Journal of Biological Chemistry. 243: 779-82. PMID 4867040  1
1967 Ghosh HP, Söll D, Khorana HG. Studies on polynucleotides. LXVII. Initiation of protein synthesis in vitro as studied by using ribopolynucleotides with repeating nucleotide sequences as messengers. Journal of Molecular Biology. 25: 275-98. PMID 5340533  1
1966 Lohrmann R, Söll D, Hayatsu H, Ohtsuka E, Khorana HG. Studies on polynucleotides. LI. Syntheses of the 64 possible ribotrinucleotides derived from the four major ribomononucleotides. Journal of the American Chemical Society. 88: 819-29. PMID 5902563  1
1966 Söll D, Jones DS, Ohtsuka E, Faulkner RD, Lohrmann R, Hayatsu H, Khorana HG. Specificity of sRNA for recognition of codons as studied by the ribosomal binding technique. Journal of Molecular Biology. 19: 556-73. PMID 5338858  1
1966 Söll D, Cherayil J, Jones DS, Faulkner RD, Hapel A, Bock RM, Khorana HG. sRNA specificity for codon recognition as studied by the ribosomal binding technique. Cold Spring Harbor Symposia On Quantitative Biology. 31: 51-61. PMID 4866399  1
1965 Söll D, Ohtsuka E, Jones DS, Lohrmann R, Hayatsu H, Nishimura S, Khorana HG. Studies on polynucleotides, XLIX. Stimulation of the binding of aminoacyl-sRNA's to ribosomes by ribotrinucleotides and a survey of codon assignments for 20 amino acids. Proceedings of the National Academy of Sciences of the United States of America. 54: 1378-85. PMID 5325653  1
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