Reza Kalhor, Ph.D. - Publications

Affiliations: 
2019- Biomedical Engineering Johns Hopkins University, Baltimore, MD 
Area:
Synthetic biology, cell engineering, genome engineering, developmental biology
Website:
https://www.bme.jhu.edu/faculty_staff/reza-kalhor-phd/

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Islam M, Yang Y, Simmons AJ, Shah VM, Pavan MK, Xu Y, Tasneem N, Chen Z, Trinh LT, Molina P, Ramirez-Solano MA, Sadien I, Dou J, Chen K, Magnuson MA, ... ... Kalhor R, et al. Temporal recording of mammalian development and precancer. Biorxiv : the Preprint Server For Biology. PMID 38187699 DOI: 10.1101/2023.12.18.572260  0.467
2023 Dekker J, Alber F, Aufmkolk S, Beliveau BJ, Bruneau BG, Belmont AS, Bintu L, Boettiger A, Calandrelli R, Disteche CM, Gilbert DM, Gregor T, Hansen AS, Huang B, Huangfu D, ... Kalhor R, et al. Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project. Molecular Cell. PMID 37419111 DOI: 10.1016/j.molcel.2023.06.018  0.464
2022 Zou RS, Marin-Gonzalez A, Liu Y, Liu HB, Shen L, Dveirin RK, Luo JXJ, Kalhor R, Ha T. Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites. Nature Cell Biology. 24: 1433-1444. PMID 36064968 DOI: 10.1038/s41556-022-00975-z  0.344
2021 Bhan N, Callisto A, Strutz J, Glaser J, Kalhor R, Boyden ES, Church G, Kording K, Tyo KEJ. Recording Temporal Signals with Minutes Resolution Using Enzymatic DNA Synthesis. Journal of the American Chemical Society. 143: 16630-16640. PMID 34591459 DOI: 10.1021/jacs.1c07331  0.437
2021 Leeper K, Kalhor K, Vernet A, Graveline A, Church GM, Mali P, Kalhor R. Lineage barcoding in mice with homing CRISPR. Nature Protocols. PMID 33692551 DOI: 10.1038/s41596-020-00485-y  0.649
2019 Lee HH, Kalhor R, Goela N, Bolot J, Church GM. Terminator-free template-independent enzymatic DNA synthesis for digital information storage. Nature Communications. 10: 2383. PMID 31160595 DOI: 10.1038/S41467-019-10258-1  0.493
2018 Kalhor R, Kalhor K, Mejia L, Leeper K, Graveline A, Mali P, Church GM. Developmental barcoding of whole mouse via homing CRISPR. Science (New York, N.Y.). PMID 30093604 DOI: 10.1126/Science.Aat9804  0.651
2017 Ostrow AZ, Kalhor R, Gan Y, Villwock SK, Linke C, Barberis M, Chen L, Aparicio OM. Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28265091 DOI: 10.1073/Pnas.1612422114  0.345
2017 Kalhor R, Mali P, Church GM. Rapidly evolving homing CRISPR barcodes. Nature Methods. 14: 195-200. PMID 27918539 DOI: 10.1038/Nmeth.4108  0.672
2016 Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell CA, Chen L, Alber F. Population-based 3D genome structure analysis reveals driving forces in spatial genome organization. Proceedings of the National Academy of Sciences of the United States of America. PMID 26951677 DOI: 10.1073/Pnas.1512577113  0.31
2015 Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Ferrante TC, Terry R, Turczyk BM, Yang JL, Lee HS, Aach J, Zhang K, Church GM. Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues. Nature Protocols. 10: 442-58. PMID 25675209 DOI: 10.1038/Nprot.2014.191  0.618
2014 Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, et al. Highly multiplexed subcellular RNA sequencing in situ. Science (New York, N.Y.). 343: 1360-3. PMID 24578530 DOI: 10.1126/Science.1250212  0.628
2013 Marblestone AH, Zamft BM, Maguire YG, Shapiro MG, Cybulski TR, Glaser JI, Amodei D, Stranges PB, Kalhor R, Dalrymple DA, Seo D, Alon E, Maharbiz MM, Carmena JM, Rabaey JM, et al. Physical principles for scalable neural recording. Frontiers in Computational Neuroscience. 7: 137. PMID 24187539 DOI: 10.3389/Fncom.2013.00137  0.627
2011 Kalhor R, Tjong H, Jayathilaka N, Alber F, Chen L. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nature Biotechnology. 30: 90-8. PMID 22198700 DOI: 10.1038/Nbt.2057  0.314
2006 Elahi E, Kalhor R, Banihosseini SS, Torabi N, Pour-Jafari H, Houshmand M, Amini SS, Ramezani A, Loeys B. Homozygous missense mutation in fibulin-5 in an Iranian autosomal recessive cutis laxa pedigree and associated haplotype. The Journal of Investigative Dermatology. 126: 1506-9. PMID 16691202 DOI: 10.1038/Sj.Jid.5700247  0.3
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