| Year |
Citation |
Score |
| 2022 |
Tretter F, Peters EMJ, Sturmberg J, Bennett J, Voit E, Dietrich JW, Smith G, Weckwerth W, Grossman Z, Wolkenhauer O, Marcum JA. Perspectives of (/memorandum for) systems thinking on COVID-19 pandemic and pathology. Journal of Evaluation in Clinical Practice. PMID 36168893 DOI: 10.1111/jep.13772 |
0.74 |
|
| 2021 |
Tretter F, Wolkenhauer O, Meyer-Hermann M, Dietrich JW, Green S, Marcum J, Weckwerth W. The Quest for System-Theoretical Medicine in the COVID-19 Era. Frontiers in Medicine. 8: 640974. PMID 33855036 DOI: 10.3389/fmed.2021.640974 |
0.755 |
|
| 2020 |
Logotheti S, Marquardt S, Gupta SK, Richter C, Edelhäuser BAH, Engelmann D, Brenmoehl J, Söhnchen C, Murr N, Alpers M, Singh KP, Wolkenhauer O, Heckl D, Spitschak A, Pützer BM. LncRNA-SLC16A1-AS1 induces metabolic reprogramming during Bladder Cancer progression as target and co-activator of E2F1. Theranostics. 10: 9620-9643. PMID 32863950 DOI: 10.7150/Thno.44176 |
0.3 |
|
| 2020 |
Nikolov S, Wolkenhauer O, Vera J, Nenov M. The role of cooperativity in a p53-miR34 dynamical mathematical model. Journal of Theoretical Biology. 495: 110252. PMID 32199858 DOI: 10.1016/J.Jtbi.2020.110252 |
0.306 |
|
| 2020 |
Auffray C, Balling R, Blomberg N, Bonaldo MC, Boutron B, Brahmachari S, Bréchot C, Cesario A, Chen S, Clément K, Danilenko D, Di Meglio A, Gelemanović A, Goble C, Gojobori T, ... ... Wolkenhauer O, et al. COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight F1000research. 9: 1130. DOI: 10.12688/F1000Research.26098.1 |
0.313 |
|
| 2019 |
Wolfien M, Brauer DL, Bagnacani A, Wolkenhauer O. Workflow Development for the Functional Characterization of ncRNAs. Methods in Molecular Biology (Clifton, N.J.). 1912: 111-132. PMID 30635892 DOI: 10.1007/978-1-4939-8982-9_5 |
0.33 |
|
| 2019 |
Schopohl P, Smita S, Khan F, Gebhardt T, Hoch M, Brauer D, Cesnulevicius K, Schultz M, Wolkenhauer O, Gupta S. Ab0063 A Systems Approach To Investigate Inflammation Resolution By Multicomponent Medicinal Product Tr14 Annals of the Rheumatic Diseases. 78: 1496-1496. DOI: 10.1136/Annrheumdis-2019-Eular.5084 |
0.327 |
|
| 2019 |
Wolkenhauer O. Vom Anfang und Ende der Systembiologie Biospektrum. 25: 507-509. DOI: 10.1007/S12268-019-1086-Y |
0.369 |
|
| 2018 |
Neal ML, König M, Nickerson D, Misirli G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, ... ... Wolkenhauer O, et al. Harmonizing semantic annotations for computational models in biology. Briefings in Bioinformatics. PMID 30462164 DOI: 10.1093/Bib/Bby087 |
0.349 |
|
| 2018 |
Khan FM, Gupta SK, Wolkenhauer O. Integrative workflows for network analysis. Essays in Biochemistry. 62: 549-561. PMID 30366988 DOI: 10.1042/Ebc20180005 |
0.316 |
|
| 2018 |
Lambusch F, Waltemath D, Wolkenhauer O, Sandkuhl K, Rosenke C, Henkel R. Identifying frequent patterns in biochemical reaction networks: a workflow. Database : the Journal of Biological Databases and Curation. 2018. PMID 29992320 DOI: 10.1093/Database/Bay051 |
0.329 |
|
| 2018 |
Scharm M, Gebhardt T, Touré V, Bagnacani A, Salehzadeh-Yazdi A, Wolkenhauer O, Waltemath D. Evolution of computational models in BioModels Database and the Physiome Model Repository. Bmc Systems Biology. 12: 53. PMID 29650016 DOI: 10.1186/S12918-018-0553-2 |
0.303 |
|
| 2018 |
Apweiler R, Beissbarth T, Berthold MR, Blüthgen N, Burmeister Y, Dammann O, Deutsch A, Feuerhake F, Franke A, Hasenauer J, Hoffmann S, Höfer T, Jansen PL, Kaderali L, Klingmüller U, ... ... Wolkenhauer O, et al. Whither systems medicine? Experimental & Molecular Medicine. 50: e453. PMID 29497170 DOI: 10.1038/Emm.2017.290 |
0.366 |
|
| 2018 |
Jalili M, Gebhardt T, Wolkenhauer O, Salehzadeh-Yazdi A. Unveiling network-based functional features through integration of gene expression into protein networks. Biochimica Et Biophysica Acta. PMID 29466699 DOI: 10.1016/J.Bbadis.2018.02.010 |
0.324 |
|
| 2018 |
Touré V, Le Novère N, Waltemath D, Wolkenhauer O. Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation. Plos Computational Biology. 14: e1005740. PMID 29447151 DOI: 10.1371/Journal.Pcbi.1005740 |
0.327 |
|
| 2018 |
Dreyer FS, Cantone M, Eberhardt M, Jaitly T, Walter L, Wittmann J, Gupta S, Khan F, Wolkenhauer O, Pützer B, Jäck HM, Heinzerling L, Vera J. A web platform for the network analysis of highthroughput data in melanoma and its use to investigate mechanisms of resistance to anti-PD1 immunotherapy. Biochimica Et Biophysica Acta. PMID 29410200 DOI: 10.1016/J.Bbadis.2018.01.020 |
0.312 |
|
| 2018 |
Nikolov S, Santos G, Wolkenhauer O, Vera J. Model-Based Phenotypic Signatures Governing the Dynamics of the Stem and Semi-differentiated Cell Populations in Dysplastic Colonic Crypts. Bulletin of Mathematical Biology. 80: 360-384. PMID 29218591 DOI: 10.1007/S11538-017-0378-Y |
0.331 |
|
| 2018 |
Khan FM, Sadeghi M, Gupta SK, Wolkenhauer O. A Network-Based Integrative Workflow to Unravel Mechanisms Underlying Disease Progression. Methods in Molecular Biology (Clifton, N.J.). 1702: 247-276. PMID 29119509 DOI: 10.1007/978-1-4939-7456-6_12 |
0.341 |
|
| 2017 |
Razavi SM, Sabbaghian M, Jalili M, Divsalar A, Wolkenhauer O, Salehzadeh-Yazdi A. Comprehensive functional enrichment analysis of male infertility. Scientific Reports. 7: 15778. PMID 29150651 DOI: 10.1038/S41598-017-16005-0 |
0.337 |
|
| 2017 |
Singh N, Freiesleben S, Gupta SK, Shukla Y, Wolkenhauer O. Identification of antineoplastic targets with systems approaches, using resveratrol as an in-depth case study. Current Pharmaceutical Design. PMID 28699531 DOI: 10.2174/1381612823666170710152918 |
0.342 |
|
| 2016 |
Scharm M, Waltemath D, Mendes P, Wolkenhauer O. COMODI: an ontology to characterise differences in versions of computational models in biology. Journal of Biomedical Semantics. 7: 46. PMID 27401413 DOI: 10.1186/S13326-016-0080-2 |
0.334 |
|
| 2016 |
Waltemath D, Wolkenhauer O. How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. Ieee Transactions On Bio-Medical Engineering. 63: 1999-2006. PMID 27295645 DOI: 10.1109/Tbme.2016.2555481 |
0.336 |
|
| 2016 |
Rateitschak K, Kaderali L, Wolkenhauer O, Jaster R. Autocrine TGF-β/ZEB/microRNA-200 signal transduction drives epithelial-mesenchymal transition: Kinetic models predict minimal drug dose to inhibit metastasis. Cellular Signalling. 28: 861-70. PMID 27000495 DOI: 10.1016/J.Cellsig.2016.03.002 |
0.315 |
|
| 2016 |
Strunz S, Wolkenhauer O, de la Fuente A. Network-Assisted Disease Classification and Biomarker Discovery. Methods in Molecular Biology (Clifton, N.J.). 1386: 353-74. PMID 26677191 DOI: 10.1007/978-1-4939-3283-2_16 |
0.329 |
|
| 2016 |
Amirkhah R, Farazmand A, Wolkenhauer O, Schmitz U. RNA Systems Biology for Cancer: From Diagnosis to Therapy. Methods in Molecular Biology (Clifton, N.J.). 1386: 305-30. PMID 26677189 DOI: 10.1007/978-1-4939-3283-2_14 |
0.327 |
|
| 2016 |
Scharm M, Wolkenhauer O, Waltemath D. An algorithm to detect and communicate the differences in computational models describing biological systems. Bioinformatics (Oxford, England). 32: 563-70. PMID 26490504 DOI: 10.1093/Bioinformatics/Btv484 |
0.315 |
|
| 2016 |
Henkel R, Lambusch F, Wolkenhauer O, Sandkuhl K, Rosenke C, Waltemath D. Finding patterns in biochemical reaction networks Peerj. 4. DOI: 10.7287/Peerj.Preprints.1479V2 |
0.317 |
|
| 2015 |
Schmitz U, Naderi-Meshkin H, Gupta SK, Wolkenhauer O, Vera J. The RNA world in the 21st century-a systems approach to finding non-coding keys to clinical questions. Briefings in Bioinformatics. PMID 26330575 DOI: 10.1093/Bib/Bbv061 |
0.322 |
|
| 2015 |
Gupta SK, Jaitly T, Schmitz U, Schuler G, Wolkenhauer O, Vera J. Personalized cancer immunotherapy using Systems Medicine approaches. Briefings in Bioinformatics. PMID 26174229 DOI: 10.1093/Bib/Bbv046 |
0.323 |
|
| 2015 |
Alm R, Waltemath D, Wolfien M, Wolkenhauer O, Henkel R. Annotation-based feature extraction from sets of SBML models. Journal of Biomedical Semantics. 6: 20. PMID 25904997 DOI: 10.1186/S13326-015-0014-4 |
0.327 |
|
| 2015 |
Henkel R, Wolkenhauer O, Waltemath D. Combining computational models, semantic annotations and simulation experiments in a graph database. Database : the Journal of Biological Databases and Curation. 2015. PMID 25754863 DOI: 10.1093/Database/Bau130 |
0.331 |
|
| 2014 |
Dammann O, Gray P, Gressens P, Wolkenhauer O, Leviton A. Systems Epidemiology: What’s in a Name? Online Journal of Public Health Informatics. 6. PMID 25598870 DOI: 10.5210/Ojphi.V6I3.5571 |
0.37 |
|
| 2014 |
Wolkenhauer O. Pushing limits by embracing complexity. Iet Systems Biology. 8: 244-50. PMID 25478699 DOI: 10.1049/Iet-Syb.2014.0031 |
0.325 |
|
| 2014 |
Meier C, Spitschak A, Abshagen K, Gupta S, Mor JM, Wolkenhauer O, Haier J, Vollmar B, Alla V, Pützer BM. Association of RHAMM with E2F1 promotes tumour cell extravasation by transcriptional up-regulation of fibronectin. The Journal of Pathology. 234: 351-64. PMID 25042645 DOI: 10.1002/Path.4400 |
0.306 |
|
| 2014 |
Wolkenhauer O, Auffray C, Brass O, Clairambault J, Deutsch A, Drasdo D, Gervasio F, Preziosi L, Maini P, Marciniak-Czochra A, Kossow C, Kuepfer L, Rateitschak K, Ramis-Conde I, Ribba B, et al. Enabling multiscale modeling in systems medicine. Genome Medicine. 6: 21. PMID 25031615 DOI: 10.1186/Gm538 |
0.307 |
|
| 2014 |
Khan FM, Schmitz U, Nikolov S, Engelmann D, Pützer BM, Wolkenhauer O, Vera J. Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic. Biochimica Et Biophysica Acta. 1844: 289-98. PMID 23692959 DOI: 10.1016/J.Bbapap.2013.05.007 |
0.343 |
|
| 2013 |
Lai X, Bhattacharya A, Schmitz U, Kunz M, Vera J, Wolkenhauer O. A systems' biology approach to study microRNA-mediated gene regulatory networks. Biomed Research International. 2013: 703849. PMID 24350286 DOI: 10.1155/2013/703849 |
0.347 |
|
| 2013 |
Evans MR, Grimm V, Johst K, Knuuttila T, de Langhe R, Lessells CM, Merz M, O'Malley MA, Orzack SH, Weisberg M, Wilkinson DJ, Wolkenhauer O, Benton TG. Do simple models lead to generality in ecology? Trends in Ecology & Evolution. 28: 578-83. PMID 23827437 DOI: 10.1016/J.Tree.2013.05.022 |
0.354 |
|
| 2013 |
Wolkenhauer O, Green S. The search for organizing principles as a cure against reductionism in systems medicine. The Febs Journal. 280: 5938-48. PMID 23621685 DOI: 10.1111/Febs.12311 |
0.339 |
|
| 2013 |
Minoo P, Wolkenhauer O, Guttentag S. Systems biology and pediatric research. Pediatric Research. 73: 499-501. PMID 23545998 DOI: 10.1038/Pr.2013.33 |
0.304 |
|
| 2013 |
Jablonsky J, Hagemann M, Schwarz D, Wolkenhauer O. Phosphoglycerate mutases function as reverse regulated isoenzymes in Synechococcus elongatus PCC 7942. Plos One. 8: e58281. PMID 23484009 DOI: 10.1371/Journal.Pone.0058281 |
0.303 |
|
| 2013 |
Vera J, Lai X, Schmitz U, Wolkenhauer O. MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology. Advances in Experimental Medicine and Biology. 774: 55-76. PMID 23377968 DOI: 10.1007/978-94-007-5590-1_4 |
0.354 |
|
| 2013 |
Waltemath D, Henkel R, Hälke R, Scharm M, Wolkenhauer O. Improving the reuse of computational models through version control. Bioinformatics (Oxford, England). 29: 742-8. PMID 23335018 DOI: 10.1093/Bioinformatics/Btt018 |
0.305 |
|
| 2013 |
Wolkenhauer O, Auffray C, Jaster R, Steinhoff G, Dammann O. The road from systems biology to systems medicine Pediatric Research. 73: 502-507. PMID 23314297 DOI: 10.1038/Pr.2013.4 |
0.384 |
|
| 2013 |
Gormley P, Li K, Wolkenhauer O, Irwin GW, Du D. Reverse Engineering of Biochemical Reaction Networks Using Co-evolution with Eng-Genes Cognitive Computation. 5: 106-118. DOI: 10.1007/S12559-012-9159-Y |
0.313 |
|
| 2012 |
Lai X, Wolkenhauer O, Vera J. Modeling miRNA regulation in cancer signaling systems: miR-34a regulation of the p53/Sirt1 signaling module. Methods in Molecular Biology (Clifton, N.J.). 880: 87-108. PMID 23361983 DOI: 10.1007/978-1-61779-833-7_6 |
0.313 |
|
| 2012 |
Rateitschak K, Winter F, Lange F, Jaster R, Wolkenhauer O. Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells. Plos Computational Biology. 8: e1002815. PMID 23284277 DOI: 10.1371/Journal.Pcbi.1002815 |
0.306 |
|
| 2012 |
Guebel DV, Schmitz U, Wolkenhauer O, Vera J. Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach. Molecular Biosystems. 8: 1230-42. PMID 22298312 DOI: 10.1039/C2Mb05277F |
0.311 |
|
| 2012 |
Wolkenhauer O, Shibata D, Mesarović MD. The role of theorem proving in systems biology Journal of Theoretical Biology. 300: 57-61. PMID 22244914 DOI: 10.1016/J.Jtbi.2011.12.023 |
0.345 |
|
| 2012 |
Jones N, Wolkenhauer O. Diagrams as locality aids for explanation and model construction in cell biology Biology and Philosophy. 27: 705-721. DOI: 10.1007/S10539-012-9311-9 |
0.339 |
|
| 2011 |
Jablonsky J, Bauwe H, Wolkenhauer O. Modeling the Calvin-Benson cycle. Bmc Systems Biology. 5: 185. PMID 22051069 DOI: 10.1186/1752-0509-5-185 |
0.323 |
|
| 2011 |
Vera J, Rateitschak K, Lange F, Kossow C, Wolkenhauer O, Jaster R. Systems biology of JAK-STAT signalling in human malignancies. Progress in Biophysics and Molecular Biology. 106: 426-34. PMID 21762720 DOI: 10.1016/J.Pbiomolbio.2011.06.013 |
0.377 |
|
| 2011 |
Bousquet J, Anto JM, Sterk PJ, Adcock IM, Chung KF, Roca J, Agusti A, Brightling C, Cambon-Thomsen A, Cesario A, Abdelhak S, Antonarakis SE, Avignon A, Ballabio A, Baraldi E, ... ... Wolkenhauer O, et al. Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. 3: 43. PMID 21745417 DOI: 10.1186/Gm259 |
0.332 |
|
| 2011 |
Drack M, Wolkenhauer O. System approaches of Weiss and Bertalanffy and their relevance for systems biology today. Seminars in Cancer Biology. 21: 150-5. PMID 21616150 DOI: 10.1016/J.Semcancer.2011.05.001 |
0.366 |
|
| 2011 |
Lange F, Rateitschak K, Fitzner B, Pöhland R, Wolkenhauer O, Jaster R. Studies on mechanisms of interferon-gamma action in pancreatic cancer using a data-driven and model-based approach Molecular Cancer. 10: 13-13. PMID 21310022 DOI: 10.1186/1476-4598-10-13 |
0.308 |
|
| 2011 |
Millat T, Wolkenhauer O, Fischer R, Bahl H. Modeling of cellular processes: methods, data, and requirements. Methods of Molecular Biology. 696: 429-447. PMID 21063964 DOI: 10.1007/978-1-60761-987-1_27 |
0.373 |
|
| 2011 |
Nikolov S, Vera J, Schmitz U, Wolkenhauer O. A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks. Theory in Biosciences = Theorie in Den Biowissenschaften. 130: 55-69. PMID 20809366 DOI: 10.1007/S12064-010-0109-5 |
0.354 |
|
| 2010 |
Frey S, Sott K, Smedh M, Millat T, Dahl P, Wolkenhauer O, Goksör M. A mathematical analysis of nuclear intensity dynamics for Mig1-GFP under consideration of bleaching effects and background noise in Saccharomyces cerevisiae. Molecular Biosystems. 7: 215-23. PMID 20967382 DOI: 10.1039/C005305H |
0.3 |
|
| 2010 |
Vera J, Rath O, Balsa-Canto E, Banga JR, Kolch W, Wolkenhauer O. Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models Molecular Biosystems. 6: 2174-2191. PMID 20717620 DOI: 10.1039/C0Mb00018C |
0.353 |
|
| 2010 |
Liebal UW, Millat T, De Jong IG, Kuipers OP, Völker U, Wolkenhauer O. How mathematical modelling elucidates signalling in Bacillus subtilis. Molecular Microbiology. 77: 1083-95. PMID 20624218 DOI: 10.1111/J.1365-2958.2010.07283.X |
0.366 |
|
| 2010 |
Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE, Gallahan D, Gatenby R, Günther U, Harms BD, et al. Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research. 70: 12-3. PMID 20028868 DOI: 10.1158/0008-5472.Can-09-2676 |
0.347 |
|
| 2010 |
Vera J, Schultz J, Ibrahim S, Raatz Y, Wolkenhauer O, Kunz M. Dynamical effects of epigenetic silencing of 14-3-3sigma expression. Molecular Biosystems. 6: 264-73. PMID 20024089 DOI: 10.1039/B907863K |
0.304 |
|
| 2010 |
Rateitschak K, Karger A, Fitzner B, Lange F, Wolkenhauer O, Jaster R. Mathematical modelling of interferon-γ signalling in pancreatic stellate cells reflects and predicts the dynamics of STAT1 pathway activity Cellular Signalling. 22: 97-105. PMID 19781632 DOI: 10.1016/J.Cellsig.2009.09.019 |
0.342 |
|
| 2010 |
Nikolov S, Lai X, Liebal UW, Wolkenhauer O, Vera J. Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics International Journal of Systems Science. 41: 81-105. DOI: 10.1080/00207720903147746 |
0.347 |
|
| 2009 |
Lai X, Nikolov S, Wolkenhauer O, Vera J. A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis Computational Biology and Chemistry. 33: 312-324. PMID 19660986 DOI: 10.1016/J.Compbiolchem.2009.07.003 |
0.324 |
|
| 2009 |
Ullah M, Wolkenhauer O. Investigating the two-moment characterisation of subcellular biochemical networks. Journal of Theoretical Biology. 260: 340-352. PMID 19500597 DOI: 10.1016/J.Jtbi.2009.05.022 |
0.315 |
|
| 2009 |
Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I. SysBioMed report: advancing systems biology for medical applications. Iet Systems Biology. 3: 131-6. PMID 19449974 DOI: 10.1049/Iet-Syb.2009.0005 |
0.42 |
|
| 2009 |
Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, ... ... Wolkenhauer O, et al. Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Molecular Oncology. 3: 9-17. PMID 19383362 DOI: 10.1016/J.Molonc.2008.11.003 |
0.357 |
|
| 2009 |
Wolkenhauer O, Lao A, Omholt S, Martens H. Systems approaches in molecular and cell biology: making sense out of data and providing meaning to models Proceedings of Spie. 7343: 734318. DOI: 10.1117/12.822742 |
0.378 |
|
| 2008 |
Vera J, Wolkenhauer O. A system biology approach to understand functional activity of cell communication systems. Methods in Cell Biology. 90: 399-415. PMID 19195559 DOI: 10.1016/S0091-679X(08)00817-0 |
0.375 |
|
| 2008 |
Vera J, Millat T, Kolch W, Wolkenhauer O. Dynamics of receptor and protein transducer homodimerisation. Bmc Systems Biology. 2: 92-92. PMID 18976473 DOI: 10.1186/1752-0509-2-92 |
0.303 |
|
| 2007 |
Ullah M, Wolkenhauer O. Family tree of Markov models in systems biology Iet Systems Biology. 1: 247-254. PMID 17708432 DOI: 10.1049/Iet-Syb:20070017 |
0.335 |
|
| 2007 |
Wolkenhauer O. Essay: Defining Systems Biology: An Engineering Perspective Iet Systems Biology. 1: 204-206. PMID 17708427 DOI: 10.1049/Iet-Syb:20079017 |
0.313 |
|
| 2007 |
Vera J, Sun C, Oertel Y, Wolkenhauer O. PLMaddon: a power-law module for the Matlab SBToolbox. Bioinformatics. 23: 2638-2640. PMID 17495997 DOI: 10.1093/Bioinformatics/Btm245 |
0.301 |
|
| 2007 |
Vera J, Balsa-Canto E, Wellstead P, Banga JR, Wolkenhauer O. Power-law models of signal transduction pathways Cellular Signalling. 19: 1531-1541. PMID 17399948 DOI: 10.1016/J.Cellsig.2007.01.029 |
0.326 |
|
| 2007 |
Schmidt H, Drews G, Vera J, Wolkenhauer O. SBML export interface for the systems biology toolbox for MATLAB Bioinformatics. 23: 1297-1298. PMID 17384017 DOI: 10.1093/Bioinformatics/Btm105 |
0.328 |
|
| 2007 |
Wolkenhauer O, Hofmeyr JH. An abstract cell model that describes the self-organization of cell function in living systems. Journal of Theoretical Biology. 246: 461-76. PMID 17328919 DOI: 10.1016/J.Jtbi.2007.01.005 |
0.364 |
|
| 2007 |
Assmus HE, Herwig R, Cho KH, Wolkenhauer O. Dynamics of biological systems: role of systems biology in medical research. Expert Review of Molecular Diagnostics. 6: 891-902. PMID 17140376 DOI: 10.1586/14737159.6.6.891 |
0.388 |
|
| 2007 |
Millat T, Bullinger E, Rohwer J, Wolkenhauer O. Approximations and their consequences for dynamic modelling of signal transduction pathways. Mathematical Biosciences. 207: 40-57. PMID 17070871 DOI: 10.1016/J.Mbs.2006.08.012 |
0.33 |
|
| 2007 |
Rateitschak K, Wolkenhauer O. Intracellular delay limits cyclic changes in gene expression Bellman Prize in Mathematical Biosciences. 205: 163-179. PMID 17027040 DOI: 10.1016/J.Mbs.2006.08.010 |
0.322 |
|
| 2007 |
Wolkenhauer O. Stochastic Modeling for Systems Biology edited by D. J. Wilkinson Biometrics. 63: 627-628. DOI: 10.1111/J.1541-0420.2006.00787_4.X |
0.31 |
|
| 2006 |
Shin SY, Choo SM, Kim D, Baek SJ, Wolkenhauer O, Cho KH. Switching feedback mechanisms realize the dual role of MCIP in the regulation of calcineurin activity. Febs Letters. 580: 5965-73. PMID 17046757 DOI: 10.1016/J.Febslet.2006.09.064 |
0.301 |
|
| 2005 |
Wolkenhauer O, Mesarovic M. Feedback dynamics and cell function: Why systems biology is called Systems Biology. Molecular Biosystems. 1: 14-6. PMID 16880959 DOI: 10.1039/B502088N |
0.383 |
|
| 2005 |
Cho K, Choo S, Wellstead P, Wolkenhauer O. A unified framework for unraveling the functional interaction structure of a biomolecular network based on stimulus-response experimental data. Febs Letters. 579: 4520-4528. PMID 16083880 DOI: 10.1016/J.Febslet.2005.07.025 |
0.314 |
|
| 2005 |
Wolkenhauer O, Sreenath SN, Wellstead P, Ullah M, Cho KH. A systems- and signal-oriented approach to intracellular dynamics. Biochemical Society Transactions. 33: 507-15. PMID 15916553 DOI: 10.1042/Bst0330507 |
0.393 |
|
| 2005 |
Cho KH, Johansson KH, Wolkenhauer O. A hybrid systems framework for cellular processes Biosystems. 80: 273-282. PMID 15888342 DOI: 10.1016/J.Biosystems.2004.12.002 |
0.368 |
|
| 2005 |
Wolkenhauer O, Ullah M, Wellstead P, Cho KH. The dynamic systems approach to control and regulation of intracellular networks. Febs Letters. 579: 1846-53. PMID 15763562 DOI: 10.1016/J.Febslet.2005.02.008 |
0.381 |
|
| 2005 |
Kutalik Z, Cho KH, Wolkenhauer O. Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Bio Systems. 75: 43-55. PMID 15245803 DOI: 10.1016/J.Biosystems.2004.03.007 |
0.343 |
|
| 2004 |
Wolkenhauer O, Ullah M, Kolch W, Cho K. Modeling and simulation of intracellular dynamics: choosing an appropriate framework Ieee Transactions On Nanobioscience. 3: 200-207. PMID 15473072 DOI: 10.1109/Tnb.2004.833694 |
0.321 |
|
| 2004 |
Hackl H, Sanchez Cabo F, Sturn A, Wolkenhauer O, Trajanoski Z. Analysis of DNA microarray data. Current Topics in Medicinal Chemistry. 4: 1357-70. PMID 15379650 DOI: 10.2174/1568026043387773 |
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| 2003 |
Cho KH, Wolkenhauer O. Analysis and modelling of signal transduction pathways in systems biology Biochemical Society Transactions. 31: 1503-1509. PMID 14641099 DOI: 10.1042/Bst0311503 |
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| 2003 |
Cho KH, Shin SY, Lee HW, Wolkenhauer O. Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway. Genome Research. 13: 2413-22. PMID 14559780 DOI: 10.1101/Gr.1195703 |
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| 2003 |
Wolkenhauer O, Kitano H, Cho KH. Systems biology Ieee Control Systems Magazine. 23: 38-48. DOI: 10.1109/Mcs.2003.1213602 |
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| 2002 |
Wolkenhauer O. Mathematical modelling in the post-genome era: understanding genome expression and regulation--a system theoretic approach. Biosystems. 65: 1-18. PMID 11888659 DOI: 10.1016/S0303-2647(02)00004-7 |
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Wolkenhauer O. Systems biology: The reincarnation of systems theory applied in biology? Briefings in Bioinformatics. 2: 258-270. PMID 11589586 DOI: 10.1093/Bib/2.3.258 |
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