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Hamid Bolouri - Publications

Affiliations: 
Institute for Systems Biology, Seattle, WA, United States 
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bolouri H, Young M, Beilke J, Johnson R, Fox B, Huang L, Santini CC, Hill CM, Vries AVV, Shannon PT, Dervan A, Sivakumar P, Trotter M, Bassett D, Ratushny A. Integrative network modeling reveals mechanisms underlying T cell exhaustion. Scientific Reports. 10: 1915. PMID 32024856 DOI: 10.1038/s41598-020-58600-8  0.326
2012 Bolouri H, Ries RE, Ramamurthy R, Alonzo TA, Auvil JMG, Davidsen TM, Gesuwan P, Gamis AS, Smith MA, Gerhard DS, Arceci RJ, Meshinchi S. Integrative Network Analysis of Pediatric AML Whole Genomes, cDNA Expression and Clinical Data Elements Reveals Shared As Well As t(8;21), Inv16 and MLL Specific Pathways; A Report From COG/NCI Target AML Initiative Blood. 120: 3519-3519. DOI: 10.1182/Blood.V120.21.3519.3519  0.37
2010 Bolouri H, Davidson EH. The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example. Developmental Biology. 340: 170-8. PMID 19523466 DOI: 10.1016/J.Ydbio.2009.06.007  0.329
2009 Chan TM, Longabaugh W, Bolouri H, Chen HL, Tseng WF, Chao CH, Jang TH, Lin YI, Hung SC, Wang HD, Yuh CH. Developmental gene regulatory networks in the zebrafish embryo. Biochimica Et Biophysica Acta. 1789: 279-98. PMID 18992377 DOI: 10.1016/J.Bbagrm.2008.09.005  0.382
2008 Georgescu C, Longabaugh WJ, Scripture-Adams DD, David-Fung ES, Yui MA, Zarnegar MA, Bolouri H, Rothenberg EV. A gene regulatory network armature for T lymphocyte specification. Proceedings of the National Academy of Sciences of the United States of America. 105: 20100-5. PMID 19104054 DOI: 10.1073/Pnas.0806501105  0.33
2006 Longabaugh W, Bolouri H. Understanding the dynamic behavior of genetic regulatory networks by functional decomposition. Current Genomics. 7: 333-41. PMID 18079985 DOI: 10.2174/138920206778948718  0.316
2006 Ramsey SA, Smith JJ, Orrell D, Marelli M, Petersen TW, de Atauri P, Bolouri H, Aitchison JD. Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast. Nature Genetics. 38: 1082-7. PMID 16936734 DOI: 10.1038/Ng1869  0.347
2005 Longabaugh WJ, Davidson EH, Bolouri H. Computational representation of developmental genetic regulatory networks. Developmental Biology. 283: 1-16. PMID 15907831 DOI: 10.1016/J.Ydbio.2005.04.023  0.31
2003 Bolouri H, Davidson EH. Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 9371-6. PMID 12883007 DOI: 10.1073/Pnas.1533293100  0.333
2002 Bolouri H, Davidson EH. Modeling transcriptional regulatory networks. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 1118-29. PMID 12447977 DOI: 10.1002/Bies.10189  0.358
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, ... ... Bolouri H, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635  0.401
2002 Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H. New computational approaches for analysis of cis-regulatory networks. Developmental Biology. 246: 86-102. PMID 12027436 DOI: 10.1006/Dbio.2002.0619  0.308
2002 Bolouri H, Davidson EH. Modeling DNA sequence-based cis-regulatory gene networks. Developmental Biology. 246: 2-13. PMID 12027430 DOI: 10.1006/Dbio.2002.0617  0.35
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, ... ... Bolouri H, et al. A genomic regulatory network for development. Science (New York, N.Y.). 295: 1669-78. PMID 11872831 DOI: 10.1126/Science.1069883  0.359
1998 Yuh CH, Bolouri H, Davidson EH. Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science (New York, N.Y.). 279: 1896-902. PMID 9506933 DOI: 10.1126/Science.279.5358.1896  0.309
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