William J.R. Longabaugh - Publications

Affiliations: 
Institute for Systems Biology, Seattle, WA, United States 

12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cary GA, McCauley BS, Zueva O, Pattinato J, Longabaugh W, Hinman VF. Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development. Nature Communications. 11: 6235. PMID 33277483 DOI: 10.1038/s41467-020-20023-4  0.479
2016 Paquette SM, Leinonen K, Longabaugh WJ. BioTapestry now provides a web application and improved drawing and layout tools. F1000research. 5: 39. PMID 27134726 DOI: 10.12688/f1000research.7620.1  0.307
2014 Peterson EJ, Reiss DJ, Turkarslan S, Minch KJ, Rustad T, Plaisier CL, Longabaugh WJ, Sherman DR, Baliga NS. A high-resolution network model for global gene regulation in Mycobacterium tuberculosis. Nucleic Acids Research. 42: 11291-303. PMID 25232098 DOI: 10.1093/Nar/Gku777  0.536
2012 Longabaugh WJ. Combing the hairball with BioFabric: a new approach for visualization of large networks. Bmc Bioinformatics. 13: 275. PMID 23102059 DOI: 10.1186/1471-2105-13-275  0.355
2012 Longabaugh WJ. BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks. Methods in Molecular Biology (Clifton, N.J.). 786: 359-94. PMID 21938637 DOI: 10.1007/978-1-61779-292-2_21  0.361
2009 Su YH, Li E, Geiss GK, Longabaugh WJ, Krämer A, Davidson EH. A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. Developmental Biology. 329: 410-21. PMID 19268450 DOI: 10.1016/J.Ydbio.2009.02.029  0.621
2009 Chan TM, Longabaugh W, Bolouri H, Chen HL, Tseng WF, Chao CH, Jang TH, Lin YI, Hung SC, Wang HD, Yuh CH. Developmental gene regulatory networks in the zebrafish embryo. Biochimica Et Biophysica Acta. 1789: 279-98. PMID 18992377 DOI: 10.1016/J.Bbagrm.2008.09.005  0.562
2009 Longabaugh WJ, Davidson EH, Bolouri H. Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. Biochimica Et Biophysica Acta. 1789: 363-74. PMID 18757046 DOI: 10.1016/J.Bbagrm.2008.07.014  0.321
2007 Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053  0.505
2007 Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, Zhong S, Longabaugh WJ, Davidson EH, Wong WH, McMahon AP. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development (Cambridge, England). 134: 1977-89. PMID 17442700 DOI: 10.1242/Dev.001966  0.344
2006 Longabaugh W, Bolouri H. Understanding the dynamic behavior of genetic regulatory networks by functional decomposition. Current Genomics. 7: 333-41. PMID 18079985 DOI: 10.2174/138920206778948718  0.467
2005 Longabaugh WJ, Davidson EH, Bolouri H. Computational representation of developmental genetic regulatory networks. Developmental Biology. 283: 1-16. PMID 15907831 DOI: 10.1016/J.Ydbio.2005.04.023  0.449
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