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Michael B. Mathews - Related publications

Biochemistry and Molecular Biology Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Regulatory RNAs; RNA–protein interactions; Novel targets for anti-HIV drugs
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Dhungel BP, Monteuuis G, Giardina C, Tabar MS, Feng Y, Metierre C, Ho S, Nagarajah R, Fontaine ARM, Shah JS, Gokal D, Bailey CG, Schmitz U, Rasko JEJ. The Fusion of and Arises from a -Splicing Event in Normal and Transformed Human Cells. International Journal of Molecular Sciences. 22. PMID 34830054 DOI: 10.3390/ijms222212178   
2021 Mohanty BK, Kushner SR. Regulation of mRNA decay in . Critical Reviews in Biochemistry and Molecular Biology. 1-25. PMID 34547957 DOI: 10.1080/10409238.2021.1968784   
2021 Palacio M, Taatjes DJ. Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription. Journal of Molecular Biology. 167216. PMID 34474085 DOI: 10.1016/j.jmb.2021.167216   
2021 Wang Y, Sun L, Wang L, Yu H, Yu X, Zou Y. modulates trophoblast cell proliferation and migration through . Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 1-6. PMID 34734756 DOI: 10.1139/bcb-2021-0044   
2021 Mercer M, Jang S, Ni C, Buszczak M. The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging. Frontiers in Cell and Developmental Biology. 9: 710186. PMID 34805139 DOI: 10.3389/fcell.2021.710186   
2021 Laliotis GI, Kenney AD, Chavdoula E, Orlacchio A, Kaba A, La Ferlita A, Anastas V, Tsatsanis C, Beane JD, Sehgal L, Coppola V, Yount JS, Tsichlis PN. Phosphor-IWS1-dependent U2AF2 splicing regulates trafficking of CAR-E-positive intronless gene mRNAs and sensitivity to viral infection. Communications Biology. 4: 1179. PMID 34635782 DOI: 10.1038/s42003-021-02668-z   
2021 Neault N, O'Reilly S, Baig AT, Plaza-Diaz J, Azimi M, Farooq F, Baird SD, MacKenzie A. High-throughput kinome-RNAi screen identifies protein kinase R activator (PACT) as a novel genetic modifier of CUG foci integrity in myotonic dystrophy type 1 (DM1). Plos One. 16: e0256276. PMID 34520479 DOI: 10.1371/journal.pone.0256276   
2021 Ren Y, Huo Y, Li W, He M, Liu S, Yang J, Zhao H, Xu L, Guo Y, Si Y, Zhao H, Rao S, Wang J, Ma Y, Wang X, et al. A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation. Genome Biology. 22: 290. PMID 34649616 DOI: 10.1186/s13059-021-02508-7   
2021 Bai W, Wells ML, Lai WS, Hicks SN, Burkholder AB, Perera L, Kimmel AR, Blackshear PJ. A post-transcriptional regulon controlled by TtpA, the single tristetraprolin family member expressed in Dictyostelium discoideum. Nucleic Acids Research. PMID 34718768 DOI: 10.1093/nar/gkab983   
2021 Kremsdorf D, Lekbaby B, Bablon P, Sotty J, Augustin J, Schnuriger A, Pol J, Soussan P. Alternative splicing of viral transcripts: the dark side of HBV. Gut. PMID 34535538 DOI: 10.1136/gutjnl-2021-324554   
2021 Webster MW, Weixlbaumer A. Macromolecular assemblies supporting transcription-translation coupling. Transcription. 1-23. PMID 34570660 DOI: 10.1080/21541264.2021.1981713   
2021 Zou X, Hu X, He F, Zhang M, Kong X, Rui S, Liu Y, Wang L, Zheng X, Liu J, Li Z, Luo H. LncRNA LINC00152 promotes oral squamous cell carcinoma growth via enhancing Upstream Transcription Factor 1 mediated Mitochondrial Ribosomal Protein L52 transcription. Journal of Oral Pathology & Medicine : Official Publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology. PMID 34664331 DOI: 10.1111/jop.13253   
2021 Perry JK, Appleby TC, Bilello JP, Feng JY, Schmitz U, Campbell EA. An atomistic model of the coronavirus replication-transcription complex as a hexamer assembled around nsp15. The Journal of Biological Chemistry. 101218. PMID 34562452 DOI: 10.1016/j.jbc.2021.101218   
2021 de Almeida M, Hinterndorfer M, Brunner H, Grishkovskaya I, Singh K, Schleiffer A, Jude J, Deswal S, Kalis R, Vunjak M, Lendl T, Imre R, Roitinger E, Neumann T, Kandolf S, et al. AKIRIN2 controls the nuclear import of proteasomes in vertebrates. Nature. PMID 34711951 DOI: 10.1038/s41586-021-04035-8   
2021 Ouyang J, Zhang Y, Xiong F, Zhang S, Gong Z, Yan Q, He Y, Wei F, Zhang W, Zhou M, Xiang B, Wang F, Li X, Li Y, Li G, et al. The role of alternative splicing in human cancer progression. American Journal of Cancer Research. 11: 4642-4667. PMID 34765285   
2021 Appel LM, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, et al. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12: 6078. PMID 34667177 DOI: 10.1038/s41467-021-26360-2   
2021 Glock C, Biever A, Tushev G, Nassim-Assir B, Kao A, Bartnik I, Tom Dieck S, Schuman EM. The translatome of neuronal cell bodies, dendrites, and axons. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34670838 DOI: 10.1073/pnas.2113929118   
2021 Smith MR, Costa G. RNA-binding proteins and translation control in angiogenesis. The Febs Journal. PMID 34796614 DOI: 10.1111/febs.16286   
2021 Talyan S, Andrade-Navarro MA, Muro EM. A Methodology to Study Pseudogenized lincRNAs. Methods in Molecular Biology (Clifton, N.J.). 2324: 49-63. PMID 34165708 DOI: 10.1007/978-1-0716-1503-4_4   
2021 Chen Z, Zhong X, Xia M, Zhong J. The roles and mechanisms of the m6A reader protein YTHDF1 in tumor biology and human diseases. Molecular Therapy. Nucleic Acids. 26: 1270-1279. PMID 34853726 DOI: 10.1016/j.omtn.2021.10.023   
2021 Yueh LY, Tseng YT, Chu CY, Lo KY. The dedicated chaperones of eL43, Puf6 and Loc1, can also bind RPL43 mRNA and regulate the production of this ribosomal protein. Journal of Biochemistry. PMID 34661244 DOI: 10.1093/jb/mvab110   
2021 Heumüller AW, Jones AN, Mourão A, Klangwart M, Shi C, Wittig I, Fischer A, Muhly Reinholz M, Buchmann GK, Dieterich C, Potente M, Braun T, Grote P, Jaé N, Sattler M, et al. Locus-Conserved Circular RNA cZNF292 Controls Endothelial Cell Flow Responses. Circulation Research. PMID 34789007 DOI: 10.1161/CIRCRESAHA.121.320029   
2021 Shah A, Mittleman BE, Gilad Y, Li YI. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation. Genome Biology. 22: 291. PMID 34649612 DOI: 10.1186/s13059-021-02502-z   
2021 Arribas-Hernández L, Rennie S, Schon M, Porcelli C, Enugutti B, Andersson R, Nodine MD, Brodersen P. The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation. Elife. 10. PMID 34591013 DOI: 10.7554/eLife.72377   
2021 Kershaw CJ, Nelson MG, Lui J, Bates CP, Jennings MD, Hubbard SJ, Ashe MP, Grant CM. Integrated multi-omics reveals common properties underlying stress granule and P-body formation. Rna Biology. 1-19. PMID 34672913 DOI: 10.1080/15476286.2021.1976986   
2021 Napoli RS, Allen PJ, Parish RW, Li SF. The MYB5 transcription factor interacts with CASEIN KINASE2 BETA3 subunit in a yeast two-hybrid system. Micropublication Biology. 2021. PMID 34723145 DOI: 10.17912/micropub.biology.000486   
2021 Xia RM, Liu T, Li WG, Xu XQ. RNA-binding protein RBM24 represses colorectal tumourigenesis by stabilising PTEN mRNA. Clinical and Translational Medicine. 11: e383. PMID 34709758 DOI: 10.1002/ctm2.383   
2021 Wai AH, Cho LH, Peng X, Waseem M, Lee DJ, Lee JM, Kim CK, Chung MY. Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.). Bmc Plant Biology. 21: 530. PMID 34772358 DOI: 10.1186/s12870-021-03310-0   
2021 Jeon HJ, Lee Y, N MPA, Wang X, Chattoraj DK, Lim HM. sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination. Plos Genetics. 17: e1009878. PMID 34710092 DOI: 10.1371/journal.pgen.1009878   
2021 Schirman D, Yakhini Z, Pilpel Y, Dahan O. A broad analysis of splicing regulation in yeast using a large library of synthetic introns. Plos Genetics. 17: e1009805. PMID 34570750 DOI: 10.1371/journal.pgen.1009805   
2021 Cho SY, Jung SJ, Kim KD, Roe JH. Non-mitochondrial aconitase regulates the expression of iron-uptake genes by controlling the RNA turnover process in fission yeast. Journal of Microbiology (Seoul, Korea). PMID 34705258 DOI: 10.1007/s12275-021-1438-4   
2021 Papadopoulos D, Solvie D, Baluapuri A, Endres T, Ha SA, Herold S, Kalb J, Giansanti C, Schülein-Völk C, Ade CP, Schneider C, Gaballa A, Vos S, Fischer U, Dobbelstein M, et al. MYCN recruits the nuclear exosome complex to RNA polymerase II to prevent transcription-replication conflicts. Molecular Cell. PMID 34847357 DOI: 10.1016/j.molcel.2021.11.002   
2021 Gu X, Schafer NP, Wolynes PG. Vectorial channeling as a mechanism for translational control by functional prions and condensates. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34795061 DOI: 10.1073/pnas.2115904118   
2021 Zhang Y, Bao C, Shen L, Tian C, Zang X, Zhang S, Chen G. Microbial Cold Shock Proteins: Overview of their Function and Mechanism of Action. Protein and Peptide Letters. PMID 34791998 DOI: 10.2174/0929866528666211118084519   
2021 Li H, Xie J, Zeng J, Wu J, Zhou J, Zhao W. gene polymorphisms regulate human retinal vascular endothelial cell proliferation and apoptosis through ASF/SF2-associated alternative splicing. European Journal of Ophthalmology. 11206721211058000. PMID 34825587 DOI: 10.1177/11206721211058000   
2021 Santiago J, Silva JV, Howl J, Santos MAS, Fardilha M. All you need to know about sperm RNAs. Human Reproduction Update. PMID 34624094 DOI: 10.1093/humupd/dmab034   
2021 Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, et al. Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing. Genome Biology. 22: 310. PMID 34763716 DOI: 10.1186/s13059-021-02525-6   
2021 Im JSH, Newburn LR, Kent G, White KA. -Activator Binding Site Context in RCNMV Modulates Subgenomic mRNA Transcription. Viruses. 13. PMID 34835058 DOI: 10.3390/v13112252   
2021 Xu J, Richard S. Cellular pathways influenced by protein arginine methylation: Implications for cancer. Molecular Cell. 81: 4357-4368. PMID 34619091 DOI: 10.1016/j.molcel.2021.09.011   
2021 Bertrand RE, Wang J, Li Y, Cheng X, Wang K, Stoilov P, Chen R. Cwc27, associated with retinal degeneration, functions as a splicing factor in vivo. Human Molecular Genetics. PMID 34726245 DOI: 10.1093/hmg/ddab319   
2021 von Elsner L, Chai G, Schneeberger PE, Harms FL, Casar C, Qi M, Alawi M, Abdel-Salam GMH, Zaki MS, Arndt F, Yang X, Stanley V, Hempel M, Gleeson JG, Kutsche K. Biallelic FRA10AC1 variants cause a neurodevelopmental disorder with growth retardation. Brain : a Journal of Neurology. PMID 34694367 DOI: 10.1093/brain/awab403   
2021 Rivera C, Verbel-Vergara D, Arancibia D, Lappala A, González M, Guzmán F, Merello G, Lee JT, Andrés ME. Revealing RCOR2 as a regulatory component of nuclear speckles. Epigenetics & Chromatin. 14: 51. PMID 34819154 DOI: 10.1186/s13072-021-00425-4   
2021 Beaudoin J, Normant V, Brault A, Henry DJ, Bachand F, Massé É, Chua G, Labbé S. Fission yeast RNA-binding proteins Puf2 and Puf4 are involved in repression of ferrireductase Frp1 expression in response to iron. Molecular Microbiology. PMID 34614242 DOI: 10.1111/mmi.14829   
2021 Liu M, Khushbu RA, Chen P, Hu HY, Tang N, Ou-Yang DJ, Wei B, Zhao YX, Huang P, Chang S. Comprehensive Analysis of Prognostic Alternative Splicing Signature Reveals Recurrence Predictor for Papillary Thyroid Cancer. Frontiers in Oncology. 11: 705929. PMID 34722250 DOI: 10.3389/fonc.2021.705929   
2021 Bhattacharya S, Wang S, Reddy D, Shen S, Zhang Y, Zhang N, Li H, Washburn MP, Florens L, Shi Y, Workman JL, Li F. Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing. Nature Communications. 12: 6452. PMID 34750379 DOI: 10.1038/s41467-021-26799-3   
2021 Mirza S, Kalluchi A, Raza M, Saleem I, Mohapatra B, Pal D, Ouellette MM, Qiu F, Yu L, Lobanov A, Zheng ZM, Zhang Y, Alsaleem MA, Rakha EA, Band H, et al. Ecdysoneless protein regulates viral and cellular mRNA splicing to promote cervical oncogenesis. Molecular Cancer Research : McR. PMID 34670863 DOI: 10.1158/1541-7786.MCR-21-0567   
2021 Wu W, Syed F, Simpson E, Lee CC, Liu J, Chang G, Dong C, Seitz C, Eizirik DL, Mirmira RG, Liu Y, Evans-Molina C. The Impact of Pro-Inflammatory Cytokines on Alternative Splicing Patterns in Human Islets. Diabetes. PMID 34697029 DOI: 10.2337/db20-0847   
2021 Wen J, Liu Y, Zhan Z, Chen S, Hu B, Ge J, Xie Q. Comprehensive analysis of mRNAs, lncRNAs and circRNAs in the early phase of microglial activation. Experimental and Therapeutic Medicine. 22: 1460. PMID 34737800 DOI: 10.3892/etm.2021.10895   
2021 Li J, Chen K, Dong X, Xu Y, Sun Q, Wang H, Chen Z, Liu C, Liu R, Yang Z, Mei X, Zhang R, Chang L, Tian Z, Chen J, et al. YTHDF1 promotes mRNA degradation via YTHDF1-AGO2 interaction and phase separation. Cell Proliferation. e13157. PMID 34821414 DOI: 10.1111/cpr.13157   
2021 Kusnadi EP, Timpone C, Topisirovic I, Larsson O, Furic L. Regulation of gene expression via translational buffering. Biochimica Et Biophysica Acta. Molecular Cell Research. 1869: 119140. PMID 34599983 DOI: 10.1016/j.bbamcr.2021.119140