Tao Huan - Publications

2018- Chemistry University of British Columbia, Vancouver, Vancouver, BC, Canada 
Metabolomics, Mass Spectrometry

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhao F, Li L, Chen Y, Huang Y, Keerthisinghe TP, Chow A, Dong T, Jia S, Xing S, Warth B, Huan T, Fang M. Risk-Based Chemical Ranking and Generating a Prioritized Human Exposome Database. Environmental Health Perspectives. 129: 47014. PMID 33929905 DOI: 10.1289/EHP7722  1
2021 Xing S, Jiao Y, Salehzadeh M, Soma KK, Huan T. SteroidXtract: Deep Learning-Based Pattern Recognition Enables Comprehensive and Rapid Extraction of Steroid-Like Metabolic Features for Automated Biology-Driven Metabolomics. Analytical Chemistry. 93: 5735-5743. PMID 33784068 DOI: 10.1021/acs.analchem.0c04834  0.44
2021 Xing S, Yu H, Liu M, Jia Q, Sun Z, Fang M, Huan T. Recognizing Contamination Fragment Ions in Liquid Chromatography-Tandem Mass Spectrometry Data. Journal of the American Society For Mass Spectrometry. PMID 33739814 DOI: 10.1021/jasms.0c00478  0.44
2021 Guo J, Shen S, Xing S, Huan T. DaDIA: Hybridizing Data-Dependent and Data-Independent Acquisition Modes for Generating High-Quality Metabolomic Data. Analytical Chemistry. PMID 33465307 DOI: 10.1021/acs.analchem.0c05022  0.48
2021 Xu T, Chen L, Lim YT, Zhao H, Chen H, Chen MW, Huan T, Huang Y, Sobota RM, Fang M. System Biology-Guided Chemical Proteomics to Discover Protein Targets of Monoethylhexyl Phthalate in Regulating Cell Cycle. Environmental Science & Technology. PMID 33459556 DOI: 10.1021/acs.est.0c05832  0.44
2020 Beskrovnaya P, Fakih D, Morneau I, Hashimi A, Bello DG, Xing S, Nanci A, Huan T, Tocheva EI. No endospore formation confirmed in members of the phylum Proteobacteria. Applied and Environmental Microbiology. PMID 33355101 DOI: 10.1128/AEM.02312-20  0.44
2020 Guo J, Huan T. Evaluation of significant features discovered from different data acquisition modes in mass spectrometry-based untargeted metabolomics. Analytica Chimica Acta. 1137: 37-46. PMID 33153607 DOI: 10.1016/J.Aca.2020.08.065  0.48
2020 Oh TG, Kim SM, Caussy C, Fu T, Guo J, Bassirian S, Singh S, Madamba EV, Bettencourt R, Richards L, Yu RT, Atkins AR, Huan T, Brenner DA, Sirlin CB, et al. A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. Cell Metabolism. 32: 901. PMID 33147487 DOI: 10.1016/j.cmet.2020.10.015  0.48
2020 Yu H, Villanueva N, Bittar T, Arsenault E, Labonté B, Huan T. Parallel metabolomics and lipidomics enables the comprehensive study of mouse brain regional metabolite and lipid patterns. Analytica Chimica Acta. 1136: 168-177. PMID 33081941 DOI: 10.1016/j.aca.2020.09.051  0.44
2020 Xing S, Hu Y, Yin Z, Liu M, Tang X, Fang M, Huan T. Retrieving and Utilizing Hypothetical Neutral Losses from Tandem Mass Spectra for Spectral Similarity Analysis and Unknown Metabolite Annotation. Analytical Chemistry. PMID 33076659 DOI: 10.1021/acs.analchem.0c02521  0.48
2020 Oh TG, Kim SM, Caussy C, Fu T, Guo J, Bassirian S, Singh S, Madamba EV, Bettencourt R, Richards L, Raffatellu M, Dorrestein PC, Yu RT, Atkins AR, Huan T, et al. A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. Cell Metabolism. PMID 32610095 DOI: 10.1016/J.Cmet.2020.06.005  0.48
2020 Guo J, Huan T. Comparison of Full-Scan, Data-Dependent, and Data-Independent Acquisition Modes in Liquid Chromatography-Mass Spectrometry Based Untargeted Metabolomics. Analytical Chemistry. 92: 8072-8080. PMID 32401506 DOI: 10.1021/Acs.Analchem.9B05135  0.48
2020 Yu H, Xing S, Nierves L, Lange PF, Huan T. Implementing quality control-based signal calibration in mass spectrometry-based metabolomics to overcome fold-change compression caused by nonlinear ESI responses. Analytical Chemistry. PMID 32319750 DOI: 10.1021/Acs.Analchem.0C00246  0.44
2020 Dong Y, Arif AA, Guo J, Ha Z, Lee-Sayer SSM, Poon GFT, Dosanjh M, Roskelley CD, Huan T, Johnson P. CD44 Loss Disrupts Lung Lipid Surfactant Homeostasis and Exacerbates Oxidized Lipid-Induced Lung Inflammation. Frontiers in Immunology. 11: 29. PMID 32082314 DOI: 10.3389/Fimmu.2020.00029  0.48
2020 Yang JJ, Han Y, Mah CH, Wanjaya E, Peng B, Xu TF, Liu M, Huan T, Fang ML. Streamlined MRM method transfer between instruments assisted with HRMS matching and retention-time prediction. Analytica Chimica Acta. 1100: 88-96. PMID 31987156 DOI: 10.1016/J.Aca.2019.12.002  0.44
2020 Li L, Zheng X, Zhou Q, Villanueva N, Nian W, Liu X, Huan T. Metabolomics-Based Discovery of Molecular Signatures for Triple Negative Breast Cancer in Asian Female Population. Scientific Reports. 10: 370. PMID 31941951 DOI: 10.1038/S41598-019-57068-5  1
2020 Tang X, Kudo Y, Baker J, LaBonte S, Jordan P, McKinnie S, Guo J, Huan T, Moore BS, Edlund A. Cariogenic produces tetramic acid strain-specific antibiotics that impair commensal colonization. Acs Infectious Diseases. PMID 31906623 DOI: 10.1021/Acsinfecdis.9B00365  0.48
2019 Zhang JJ, Tang X, Huan T, Ross AC, Moore BS. Pass-back chain extension expands multimodular assembly line biosynthesis. Nature Chemical Biology. PMID 31636431 DOI: 10.1038/S41589-019-0385-4  0.48
2019 Hu Y, Cai B, Huan T. Enhancing metabolome coverage in data-dependent LC-MS/MS analysis through an integrated feature extraction strategy. Analytical Chemistry. PMID 31626534 DOI: 10.1021/Acs.Analchem.9B02980  0.4
2019 Gimple RC, Kidwell RL, Kim LJY, Sun T, Gromovsky AD, Wu Q, Wolf M, Lv D, Bhargava S, Jiang L, Prager BC, Wang X, Ye Q, Zhu Z, Zhang G, ... ... Huan T, et al. Glioma Stem Cell Specific Super Enhancer Promotes Polyunsaturated Fatty Acid Synthesis to Support EGFR Signaling. Cancer Discovery. PMID 31201181 DOI: 10.1158/2159-8290.Cd-19-0061  0.32
2019 Jia S, Xu T, Huan T, Chong M, Liu M, Fang W, Fang M. Chemical Isotope Labeling Exposome (CIL-EXPOSOME): One High-throughput Platform for Human Urinary Global Exposome Characterization. Environmental Science & Technology. PMID 30943026 DOI: 10.1021/Acs.Est.9B00285  0.44
2018 Lee CC, Hsieh YJ, Chen SW, Fu SH, Hsu CW, Wu CC, Han W, Li Y, Huan T, Chang YS, Yu JS, Li L, Chang CH, Chen YT. Bretschneider solution-induced alterations in the urine metabolome in cardiac surgery patients. Scientific Reports. 8: 17774. PMID 30538262 DOI: 10.1038/S41598-018-35631-W  1
2018 Sapkota S, Huan T, Tran T, Zheng J, Camicioli R, Li L, Dixon RA. Alzheimer's Biomarkers From Multiple Modalities Selectively Discriminate Clinical Status: Relative Importance of Salivary Metabolomics Panels, Genetic, Lifestyle, Cognitive, Functional Health and Demographic Risk Markers. Frontiers in Aging Neuroscience. 10: 296. PMID 30333744 DOI: 10.3389/Fnagi.2018.00296  1
2018 Huan T, Tran T, Zheng J, Sapkota S, MacDonald SW, Camicioli R, Dixon RA, Li L. Metabolomics Analyses of Saliva Detect Novel Biomarkers of Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 30175979 DOI: 10.3233/Jad-180711  1
2018 Huan T, Palermo A, Ivanisevic J, Rinehart D, Edler D, Phommavongsay T, Benton HP, Guijas C, Domingo-Almenara X, Warth B, Siuzdak G. Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology. Analytical Chemistry. 90: 8396-8403. PMID 29893550 DOI: 10.1021/Acs.Analchem.8B00875  0.64
2018 Forsberg EM, Huan T, Rinehart D, Benton HP, Warth B, Hilmers B, Siuzdak G. Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online. Nature Protocols. 13: 633-651. PMID 29494574 DOI: 10.1038/Nprot.2017.151  0.64
2018 Guijas C, Montenegro-Burke JR, Domingo-Almenara X, Palermo A, Warth B, Hermann G, Koellensperger G, Huan T, Uritboonthai W, Aisporna AE, Wolan DW, Spilker ME, Benton HP, Siuzdak G. METLIN: A Technology Platform for Identifying Knowns and Unknowns. Analytical Chemistry. PMID 29381867 DOI: 10.1021/Acs.Analchem.7B04424  0.64
2018 Warth B, Raffeiner P, Granados A, Huan T, Fang M, Forsberg EM, Benton HP, Goetz L, Johnson CH, Siuzdak G. Metabolomics Reveals that Dietary Xenoestrogens Alter Cellular Metabolism Induced by Palbociclib/Letrozole Combination Cancer Therapy. Cell Chemical Biology. PMID 29337187 DOI: 10.1016/J.Chembiol.2017.12.010  0.64
2017 Warth B, Spangler S, Fang M, Johnson CH, Forsberg EM, Granados A, Martin RL, Domingo-Almenara X, Huan T, Rinehart D, Montenegro-Burke JR, Hilmers B, Aisporna AE, Hoang LT, Uritboonthai W, et al. Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing. Analytical Chemistry. PMID 28945073 DOI: 10.1021/Acs.Analchem.7B02759  0.64
2017 Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, et al. Systems biology guided by XCMS Online metabolomics. Nature Methods. 14: 461-462. PMID 28448069 DOI: 10.1038/Nmeth.4260  0.64
2016 Montenegro-Burke JR, Aisporna AE, Benton HP, Rinehart D, Fang M, Huan T, Warth B, Forsberg EM, Abe BT, Ivanisevic J, Teyton L, Lairson LL, Siuzdak G. Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes. Analytical Chemistry. PMID 27983788 DOI: 10.1021/Acs.Analchem.6B03890  0.64
2016 Huan T, Xian JW, Leung WN, Li L, Chan CW. Cerebrospinal Fluid Metabolomics After Natural Product Treatment in an Experimental Model of Cerebral Ischemia. Omics : a Journal of Integrative Biology. PMID 27732148 DOI: 10.1089/Omi.2016.0112  1
2016 Huan T, Troyer DA, Li L. Metabolite Analysis and Histology on the Exact Same Tissue: Comprehensive Metabolomic Profiling and Metabolic Classification of Prostate Cancer. Scientific Reports. 6: 32272. PMID 27578275 DOI: 10.1038/Srep32272  1
2016 Montenegro Burke JR, Phommavongsay T, Aisporna AE, Huan T, Rinehart D, Forsberg EM, Poole FL, Thorgersen MP, Adams MW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Lairson LL, Benton HP, et al. Smartphone Analytics: Expanding the Lab into the Cloud. Analytical Chemistry. PMID 27560777 DOI: 10.1021/Acs.Analchem.6B02676  0.64
2016 Luo X, Zhao S, Huan T, Sun D, Friis RM, Schultz MC, Li L. High-Performance Chemical Isotope Labeling Liquid Chromatography Mass Spectrometry for Profiling the Metabolomic Reprogramming Elicited by Ammonium Limitation in Yeast. Journal of Proteome Research. PMID 26947805 DOI: 10.1021/Acs.Jproteome.6B00070  0.52
2016 Su X, Wang N, Chen D, Li Y, Lu Y, Huan T, Xu W, Li L, Li L. Dansylation isotope labeling liquid chromatography mass spectrometry for parallel profiling of human urinary and fecal submetabolomes. Analytica Chimica Acta. 903: 100-9. PMID 26709303 DOI: 10.1016/J.Aca.2015.11.027  0.52
2015 Huan T, Tang C, Li R, Shi Y, Lin G, Li L. MyCompoundID MS/MS Search: Metabolite Identification Using a Library of Predicted Fragment-Ion-Spectra of 383,830 Possible Human Metabolites. Analytical Chemistry. PMID 26415007 DOI: 10.1021/Acs.Analchem.5B03126  1
2015 Huan T, Wu Y, Tang C, Lin G, Li L. DnsID in MyCompoundID for Rapid Identification of Dansylated Amine- and Phenol-Containing Metabolites in LC-MS-Based Metabolomics. Analytical Chemistry. PMID 26327437 DOI: 10.1021/Acs.Analchem.5B02282  1
2015 Huan T, Li L. Quantitative Metabolome Analysis Based on Chromatographic Peak Reconstruction in Chemical Isotope Labeling Liquid Chromatography Mass Spectrometry. Analytical Chemistry. 87: 7011-6. PMID 26086729 DOI: 10.1021/Acs.Analchem.5B01434  1
2015 Zhou R, Huan T, Li L. Development of versatile isotopic labeling reagents for profiling the amine submetabolome by liquid chromatography-mass spectrometry. Analytica Chimica Acta. 881: 107-16. PMID 26041526 DOI: 10.1016/J.Aca.2015.04.021  1
2015 Huan T, Li L. Counting missing values in a metabolite-intensity data set for measuring the analytical performance of a metabolomics platform. Analytical Chemistry. 87: 1306-13. PMID 25496403 DOI: 10.1021/Ac5039994  1
2015 Xu W, Chen D, Wang N, Zhang T, Zhou R, Huan T, Lu Y, Su X, Xie Q, Li L, Li L. Development of high-performance chemical isotope labeling LC-MS for profiling the human fecal metabolome. Analytical Chemistry. 87: 829-36. PMID 25486321 DOI: 10.1021/Ac503619Q  1
2014 Zhou R, Tseng CL, Huan T, Li L. IsoMS: automated processing of LC-MS data generated by a chemical isotope labeling metabolomics platform. Analytical Chemistry. 86: 4675-9. PMID 24766305 DOI: 10.1021/Ac5009089  1
2014 Friis RM, Glaves JP, Huan T, Li L, Sykes BD, Schultz MC. Rewiring AMPK and mitochondrial retrograde signaling for metabolic control of aging and histone acetylation in respiratory-defective cells. Cell Reports. 7: 565-74. PMID 24726357 DOI: 10.1016/J.Celrep.2014.03.029  0.52
2013 Li L, Li R, Zhou J, Zuniga A, Stanislaus AE, Wu Y, Huan T, Zheng J, Shi Y, Wishart DS, Lin G. MyCompoundID: using an evidence-based metabolome library for metabolite identification. Analytical Chemistry. 85: 3401-8. PMID 23373753 DOI: 10.1021/Ac400099B  0.52
2013 Yang K, Huan T, Li L, Chan CB. Proanthocyanidin-Rich Pea Seed Coats Improved Glucose Intolerance by Affecting Insulin Production in Rats Canadian Journal of Diabetes. 37. DOI: 10.1016/J.Jcjd.2013.08.179  1
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