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Bing Ren, Ph.D. - Publications

Affiliations: 
Ludwig Institute for Cancer Research, San Diego, CA, United States 
Area:
Genomics
Website:
http://www.ludwigcancerresearch.org/location/san-diego-branch/bing-ren-lab

272 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gao C, Liu J, Kriebel AR, Preissl S, Luo C, Castanon R, Sandoval J, Rivkin A, Nery JR, Behrens MM, Ecker JR, Ren B, Welch JD. Iterative single-cell multi-omic integration using online learning. Nature Biotechnology. PMID 33875866 DOI: 10.1038/s41587-021-00867-x  1
2021 Zhu M, Ren B, Richards R, Suriawinata M, Tomita N, Hassanpour S. Development and evaluation of a deep neural network for histologic classification of renal cell carcinoma on biopsy and surgical resection slides. Scientific Reports. 11: 7080. PMID 33782535 DOI: 10.1038/s41598-021-86540-4  0.8
2021 Fang R, Preissl S, Li Y, Hou X, Lucero J, Wang X, Motamedi A, Shiau AK, Zhou X, Xie F, Mukamel EA, Zhang K, Zhang Y, Behrens MM, Ecker JR, ... Ren B, et al. Comprehensive analysis of single cell ATAC-seq data with SnapATAC. Nature Communications. 12: 1337. PMID 33637727 DOI: 10.1038/s41467-021-21583-9  1
2021 Zhu C, Zhang Y, Li YE, Lucero J, Behrens MM, Ren B. Joint profiling of histone modifications and transcriptome in single cells from mouse brain. Nature Methods. PMID 33589836 DOI: 10.1038/s41592-021-01060-3  1
2021 Geusz RJ, Wang A, Chiou J, Lancman JJ, Wetton N, Kefalopoulou S, Wang J, Qui Y, Yan J, Aylward A, Ren B, Dong PDS, Gaulton KJ, Sander M. Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development. Elife. 10. PMID 33544077 DOI: 10.7554/eLife.59067  1
2021 Yan J, Qiu Y, Ribeiro Dos Santos AM, Yin Y, Li YE, Vinckier N, Nariai N, Benaglio P, Raman A, Li X, Fan S, Chiou J, Chen F, Frazer KA, Gaulton KJ, ... ... Ren B, et al. Systematic analysis of binding of transcription factors to noncoding variants. Nature. PMID 33505025 DOI: 10.1038/s41586-021-03211-0  1
2021 Crowley C, Yang Y, Qiu Y, Hu B, Abnousi A, Lipiński J, Plewczyński D, Wu D, Won H, Ren B, Hu M, Li Y. FIREcaller: Detecting frequently interacting regions from Hi-C data. Computational and Structural Biotechnology Journal. 19: 355-362. PMID 33489005 DOI: 10.1016/j.csbj.2020.12.026  1
2021 Kubo N, Ishii H, Xiong X, Bianco S, Meitinger F, Hu R, Hocker JD, Conte M, Gorkin D, Yu M, Li B, Dixon JR, Hu M, Nicodemi M, Zhao H, ... Ren B, et al. Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation. Nature Structural & Molecular Biology. PMID 33398174 DOI: 10.1038/s41594-020-00539-5  1
2021 Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ren B, et al. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. PMID 33398137 DOI: 10.1038/s41586-020-03089-4  1
2020 Gally F, Sasse SK, Kurche J, Gruca MA, Cardwell JH, Okamoto T, Chu HW, Hou X, Poirion O, Buchanan J, Preissl S, Ren B, Colgan SP, Dowell RD, Yang IV, et al. The MUC5B-associated variant, rs35705950, resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling. Jci Insight. PMID 33320836 DOI: 10.1172/jci.insight.144294  0.6
2020 Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ren B, et al. Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. PMID 33037424 DOI: 10.1038/s41586-020-2841-4  1
2020 Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Ren B, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4  1
2020 He P, Williams BA, Trout D, Marinov GK, Amrhein H, Berghella L, Goh ST, Plajzer-Frick I, Afzal V, Pennacchio LA, Dickel DE, Visel A, Ren B, Hardison RC, Zhang Y, et al. The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nature. 583: 760-767. PMID 32728245 DOI: 10.1038/S41586-020-2536-X  1
2020 He Y, Hariharan M, Gorkin DU, Dickel DE, Luo C, Castanon RG, Nery JR, Lee AY, Zhao Y, Huang H, Williams BA, Trout D, Amrhein H, Fang R, Chen H, ... ... Ren B, et al. Spatiotemporal DNA methylome dynamics of the developing mouse fetus. Nature. 583: 752-759. PMID 32728242 DOI: 10.1038/S41586-020-2119-X  1
2020 Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Ren B, et al. An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. 583: 744-751. PMID 32728240 DOI: 10.1038/S41586-020-2093-3  1
2020 Arvanitis M, Tampakakis E, Zhang Y, Wang W, Auton A, Dutta D, Glavaris S, Keramati A, Chatterjee N, Chi NC, Ren B, Post WS, Battle A. Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure. Nature Communications. 11: 1122. PMID 32111823 DOI: 10.1038/S41467-020-14843-7  1
2020 Zhu C, Preissl S, Ren B. Single-cell multimodal omics: the power of many. Nature Methods. 17: 11-14. PMID 31907462 DOI: 10.1038/S41592-019-0691-5  0.6
2019 Gorkin DU, Qiu Y, Hu M, Fletez-Brant K, Liu T, Schmitt AD, Noor A, Chiou J, Gaulton KJ, Sebat J, Li Y, Hansen KD, Ren B. Common DNA sequence variation influences 3-dimensional conformation of the human genome. Genome Biology. 20: 255. PMID 31779666 DOI: 10.1186/S13059-019-1855-4  1
2019 Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, Luebeck J, Rajkumar U, Diao Y, Li B, Zhang W, Jameson N, Corces MR, Granja JM, Chen X, ... ... Ren B, et al. Circular ecDNA promotes accessible chromatin and high oncogene expression. Nature. PMID 31748743 DOI: 10.1038/S41586-019-1763-5  1
2019 Tomita N, Abdollahi B, Wei J, Ren B, Suriawinata A, Hassanpour S. Attention-Based Deep Neural Networks for Detection of Cancerous and Precancerous Esophagus Tissue on Histopathological Slides. Jama Network Open. 2: e1914645. PMID 31693124 DOI: 10.1001/jamanetworkopen.2019.14645  0.56
2019 Chung CY, Ma Z, Dravis C, Preissl S, Poirion O, Luna G, Hou X, Giraddi RR, Ren B, Wahl GM. Single-Cell Chromatin Analysis of Mammary Gland Development Reveals Cell-State Transcriptional Regulators and Lineage Relationships. Cell Reports. 29: 495-510.e6. PMID 31597106 DOI: 10.1016/J.Celrep.2019.08.089  0.6
2019 Jung I, Schmitt A, Diao Y, Lee AJ, Liu T, Yang D, Tan C, Eom J, Chan M, Chee S, Chiang Z, Kim C, Masliah E, Barr CL, Li B, ... ... Ren B, et al. A compendium of promoter-centered long-range chromatin interactions in the human genome. Nature Genetics. PMID 31501517 DOI: 10.1038/S41588-019-0494-8  1
2019 Zhang Y, Li T, Preissl S, Amaral ML, Grinstein JD, Farah EN, Destici E, Qiu Y, Hu R, Lee AY, Chee S, Ma K, Ye Z, Zhu Q, Huang H, ... ... Ren B, et al. Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells. Nature Genetics. PMID 31427791 DOI: 10.1038/S41588-019-0479-7  1
2019 Li G, Liu Y, Zhang Y, Kubo N, Yu M, Fang R, Kellis M, Ren B. Joint profiling of DNA methylation and chromatin architecture in single cells. Nature Methods. PMID 31384045 DOI: 10.1038/S41592-019-0502-Z  1
2019 Yang Y, Zhang Y, Ren B, Dixon JR, Ma J. Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. Cell Systems. PMID 31229558 DOI: 10.1016/J.Cels.2019.05.011  1
2019 Chowdhry S, Zanca C, Rajkumar U, Koga T, Diao Y, Raviram R, Liu F, Turner K, Yang H, Brunk E, Bi J, Furnari F, Bafna V, Ren B, Mischel PS. NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling. Nature. PMID 31019297 DOI: 10.1038/S41586-019-1150-2  1
2019 Juric I, Yu M, Abnousi A, Raviram R, Fang R, Zhao Y, Zhang Y, Qiu Y, Yang Y, Li Y, Ren B, Hu M. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. Plos Computational Biology. 15: e1006982. PMID 30986246 DOI: 10.1371/Journal.Pcbi.1006982  1
2019 Wei JW, Wei JW, Jackson CR, Ren B, Suriawinata AA, Hassanpour S. Automated Detection of Celiac Disease on Duodenal Biopsy Slides: A Deep Learning Approach. Journal of Pathology Informatics. 10: 7. PMID 30984467 DOI: 10.4103/jpi.jpi_87_18  0.6
2019 Han H, Zhao MX, Wang Y, Wang J, Ren BN, Ge HN, Wang T, Sun BB, Ba Y, Li WJ. Significant Polymorphisms of Vitamin D Receptor Gene (rs2189480 and rs3847987) Related to the Risk of Type 2 Diabetes in Henan Rural Area. Biomedical and Environmental Sciences : Bes. 32: 58-62. PMID 30696542 DOI: 10.3967/bes2019.009  1
2019 Wang G, Wan Y, Ren B, Liu Z. Bioactivity of micropatterned TiO nanotubes fabricated by micro-milling and anodic oxidation. Materials Science & Engineering. C, Materials For Biological Applications. 95: 114-121. PMID 30573232 DOI: 10.1016/j.msec.2018.10.068  1
2018 Peng Q, Lu S, Shi Y, Pan Y, Limsakul P, Chernov AV, Qiu J, Chai X, Shi Y, Wang P, Ji Y, Li YJ, Strongin AY, Verkhusha VV, Izpisua Belmonte JC, ... Ren B, et al. Coordinated histone modifications and chromatin reorganization in a single cell revealed by FRET biosensors. Proceedings of the National Academy of Sciences of the United States of America. PMID 30478057 DOI: 10.1073/Pnas.1811818115  1
2018 Guo W, Jiang M, Li X, Ren B. Using a genetic algorithm to improve oil spill prediction. Marine Pollution Bulletin. 135: 386-396. PMID 30301050 DOI: 10.1016/j.marpolbul.2018.07.026  1
2018 Meng Z, Qiu Y, Lin KC, Kumar A, Placone JK, Fang C, Wang KC, Lu S, Pan M, Hong AW, Moroishi T, Luo M, Plouffe SW, Diao Y, Ye Z, ... ... Ren B, et al. RAP2 mediates mechanoresponses of the Hippo pathway. Nature. PMID 30135582 DOI: 10.1038/S41586-018-0444-0  1
2018 Zhu Y, Niu Y, Li H, Ren B, Qu R, Chen H, Zhang Y. Removal of Cd(II) and Fe(III) from DMSO by silica gel supported PAMAM dendrimers: Equilibrium, thermodynamics, kinetics and mechanism. Ecotoxicology and Environmental Safety. 162: 253-260. PMID 29990738 DOI: 10.1016/j.ecoenv.2018.06.094  1
2018 Plouffe SW, Lin KC, Moore JL, Tan FE, Ma S, Ye Z, Qiu Y, Ren B, Guan KL. The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell. The Journal of Biological Chemistry. PMID 29802201 DOI: 10.1074/Jbc.Ra118.002715  1
2018 Fei J, Ishii H, Hoeksema MA, Meitinger F, Kassavetis GA, Glass CK, Ren B, Kadonaga JT. NDF, a nucleosome destabilizing factor that facilitates transcription through nucleosomes. Genes & Development. PMID 29759984 DOI: 10.1101/Gad.313973.118  0.6
2018 Koga T, Li B, Figueroa JM, Ren B, Chen CC, Carter BS, Furnari FB. Mapping of genomic EGFRvIII deletions in glioblastoma: insight into rearrangement mechanisms and biomarker development. Neuro-Oncology. PMID 29660021 DOI: 10.1093/Neuonc/Noy058  1
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. 28: 387. PMID 29497152 DOI: 10.1038/Cr.2018.18  1
2018 Preissl S, Fang R, Huang H, Zhao Y, Raviram R, Gorkin DU, Zhang Y, Sos BC, Afzal V, Dickel DE, Kuan S, Visel A, Pennacchio LA, Zhang K, Ren B. Author Correction: Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. Nature Neuroscience. PMID 29497140 DOI: 10.1038/S41593-018-0114-4  1
2018 Preissl S, Fang R, Huang H, Zhao Y, Raviram R, Gorkin DU, Zhang Y, Sos BC, Afzal V, Dickel DE, Kuan S, Visel A, Pennacchio LA, Zhang K, Ren B. Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. Nature Neuroscience. PMID 29434377 DOI: 10.1038/S41593-018-0079-3  1
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. PMID 29313530 DOI: 10.1038/cr.2018.1  1
2017 Lee J, Liao R, Wang G, Yang BH, Luo X, Varki NM, Qiu SJ, Ren B, Fu W, Feng GS. Preventive Inhibition of Liver Tumorigenesis by Systemic Activation of Innate Immune Functions. Cell Reports. 21: 1870-1882. PMID 29141219 DOI: 10.1016/J.Celrep.2017.10.064  1
2017 Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem DA, Ping P, Galjart NJ, Ren S, Wang Y, ... Ren B, et al. High Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure. Circulation. PMID 28802249 DOI: 10.1161/Circulationaha.117.029430  1
2017 Diao Y, Fang R, Li B, Meng Z, Yu J, Qiu Y, Lin KC, Huang H, Liu T, Marina RJ, Jung I, Shen Y, Guan KL, Ren B. A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells. Nature Methods. PMID 28417999 DOI: 10.1038/Nmeth.4264  0.96
2017 DeBoever C, Li H, Jakubosky D, Benaglio P, Reyna J, Olson KM, Huang H, Biggs W, Sandoval E, D'Antonio M, Jepsen K, Matsui H, Arias A, Ren B, Nariai N, et al. Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells. Cell Stem Cell. 20: 533-546.e7. PMID 28388430 DOI: 10.1016/J.Stem.2017.03.009  0.92
2017 Xiong X, Zhang Y, Yan J, Jain S, Chee S, Ren B, Zhao H. A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis. Acs Synthetic Biology. PMID 28215080 DOI: 10.1021/Acssynbio.6B00358  1
2017 He Y, Gorkin DU, Dickel DE, Nery JR, Castanon RG, Lee AY, Shen Y, Visel A, Pennacchio LA, Ren B, Ecker JR. Improved regulatory element prediction based on tissue-specific local epigenomic signatures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193886 DOI: 10.1073/Pnas.1618353114  0.88
2017 Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, Li B, Arden K, Ren B, Nathanson DA, Kornblum HI, Taylor MD, Kaushal S, Cavenee WK, Wechsler-Reya R, et al. Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity. Nature. PMID 28178237 DOI: 10.1038/Nature21356  0.96
2016 Lee LH, Yantiss RK, Sadot E, Ren B, Calvacanti MS, Hechtman JF, Ivelja S, Huynh B, Xue Y, Shitilbans T, Guend H, Stadler ZK, Weiser MR, Vakiani E, Gonen M, et al. Diagnosing colorectal medullary carcinoma: interobserver variability and clinicopathological implications. Human Pathology. PMID 28034727 DOI: 10.1016/J.Humpath.2016.12.013  0.72
2016 Fang R, Yu M, Li G, Chee S, Liu T, Schmitt AD, Ren B. Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq. Cell Research. PMID 27886167 DOI: 10.1038/Cr.2016.137  1
2016 Schmitt AD, Hu M, Jung I, Xu Z, Qiu Y, Tan CL, Li Y, Lin S, Lin Y, Barr CL, Ren B. A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome. Cell Reports. 17: 2042-2059. PMID 27851967 DOI: 10.1016/J.Celrep.2016.10.061  1
2016 Dickel DE, Barozzi I, Zhu Y, Fukuda-Yuzawa Y, Osterwalder M, Mannion BJ, May D, Spurrell CH, Plajzer-Frick I, Pickle CS, Lee E, Garvin TH, Kato M, Akiyama JA, Afzal V, ... ... Ren B, et al. Genome-wide compendium and functional assessment of in vivo heart enhancers. Nature Communications. 7: 12923. PMID 27703156 DOI: 10.1038/Ncomms12923  1
2016 Dahl JA, Jung I, Aanes H, Greggains GD, Manaf A, Lerdrup M, Li G, Kuan S, Li B, Lee AY, Preissl S, Jermstad I, Haugen MH, Suganthan R, Bjørås M, ... ... Ren B, et al. Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition. Nature. PMID 27626377 DOI: 10.1038/Nature19360  1
2016 Schmitt AD, Hu M, Ren B. Genome-wide mapping and analysis of chromosome architecture. Nature Reviews. Molecular Cell Biology. PMID 27580841 DOI: 10.1038/Nrm.2016.104  1
2016 Dixon JR, Gorkin DU, Ren B. Chromatin Domains: The Unit of Chromosome Organization. Molecular Cell. 62: 668-80. PMID 27259200 DOI: 10.1016/J.Molcel.2016.05.018  1
2016 Zhang H, Yang S, Guo W, Ren B, Pu L, Ma T, Xia M, Jin L, Li L, Li S. Population genetic analysis of the GlobalFiler STR loci in 748 individuals from the Kazakh population of Xinjiang in northwest China. International Journal of Legal Medicine. PMID 26846763 DOI: 10.1007/s00414-016-1319-2  0.92
2016 Diao Y, Li B, Meng Z, Jung I, Lee A, Dixon J, Maliskova L, Guan KL, Shen Y, Ren B. A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9 mediated genetic screening. Genome Research. PMID 26813977 DOI: 10.1101/Gr.197152.115  1
2016 Ren B, Qin W, Wu F, Wang S, Pan C, Wang L, Zeng B, Ma S, Liang J. Apigenin and naringenin regulate glucose and lipid metabolism, and ameliorate vascular dysfunction in type 2 diabetic rats. European Journal of Pharmacology. PMID 26801071 DOI: 10.1016/j.ejphar.2016.01.002  0.72
2016 Ren B, Ramström O, Zhang Q, Ge J, Dong H. An Iron(III) Catalyst with Unusually Broad Substrate Scope in Regioselective Alkylation of Diols and Polyols. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 26789016 DOI: 10.1002/chem.201504477  0.6
2016 Wang X, Sun Q, Chen C, Yin R, Huang X, Wang X, Shi R, Xu L, Ren B. ZYG11A serves as an oncogene in non-small cell lung cancer and influences CCNE1 expression. Oncotarget. PMID 26771237 DOI: 10.18632/oncotarget.6904  0.8
2016 Zhong Q, Ren BX, Tang FR. Neurogenesis in the Hippocampus of Patients with Temporal Lobe Epilepsy. Current Neurology and Neuroscience Reports. 16: 20. PMID 26769029 DOI: 10.1007/s11910-015-0616-3  0.8
2016 Wang X, Yan F, Shi R, Huang X, Lu S, Xu L, Ren B. Hyper Expression of Mucin 5ac Indicates Poor Cancer Prognoses: A Meta-Analysis. Medicine. 95: e2396. PMID 26735541 DOI: 10.1097/MD.0000000000002396  0.92
2016 Ren BJ, Zhou ZW, Zhu DJ, Ju YL, Wu JH, Ouyang MZ, Chen XW, Zhou SF. Alisertib Induces Cell Cycle Arrest, Apoptosis, Autophagy and Suppresses EMT in HT29 and Caco-2 Cells. International Journal of Molecular Sciences. 17. PMID 26729093 DOI: 10.3390/ijms17010041  0.8
2016 Liu H, Ren B, Xu X, Zhao W, Liu E, Liang H, Peng X. Numerical simulation of wind noise of a kind of SUV vehicle rear-view mirror Harbin Gongye Daxue Xuebao/Journal of Harbin Institute of Technology. 48: 35-39. DOI: 10.11918/j.issn.0367-6234.2016.01.005  0.8
2016 Zhao J, Chillara VK, Ren B, Cho H, Qiu J, Lissenden CJ. Second harmonic generation in composites: Theoretical and numerical analyses Journal of Applied Physics. 119. DOI: 10.1063/1.4941390  0.36
2016 Liu H, Ren B, Zhao Q, Li N. Characterizing the optical chaos in a special type of small networks of semiconductor lasers using permutation entropy Optics Communications. 359: 79-84. DOI: 10.1016/j.optcom.2015.09.059  0.72
2016 Wang G, Ren B, Wang Y. Experimental study on hydrodynamic performance of arc plate breakwater Ocean Engineering. 111: 593-601. DOI: 10.1016/j.oceaneng.2015.11.016  1
2016 Li S, Zhou B, Ren B, Xing L, Tan L, Dong L, Li J. Preparation of MgO nanomaterials by microemulsion-based oil/water interface precipitation Materials Letters. 171: 204-207. DOI: 10.1016/j.matlet.2016.02.048  0.8
2016 Huang JX, Li B, Liu B, Liu BJ, Zhao JB, Ren B. Structural evolution of NM (Ni and Mn) lithium-rich layered material revealed by in-situ electrochemical Raman spectroscopic study Journal of Power Sources. 310: 85-90. DOI: 10.1016/j.jpowsour.2016.01.065  0.92
2016 Jia H, Li M, Li X, Ren B, Liu X, Zhao J. Effects of nonmetal (F, Si, B, and P) doping on the electronic structure and elastic properties of CeO2: A first-principles study Journal of Alloys and Compounds. 666: 419-424. DOI: 10.1016/j.jallcom.2016.01.059  0.8
2016 Li CG, Yuan YQ, Hu YF, Zhang J, Tang YN, Ren BZ. Density functional theory study of the structures and electronic properties of copper and sulfur doped copper clusters Computational and Theoretical Chemistry. 1080: 47-55. DOI: 10.1016/j.comptc.2016.01.018  0.8
2016 You L, Zong W, Xiong G, Ding F, Wang S, Ren B, Dragutan I, Dragutan V, Sun Y. Cooperative effects of lanthanides when associated with palladium in novel, 3D Pd/Ln coordination polymers. Sustainable applications as water-stable, heterogeneous catalysts in carbon-carbon cross-coupling reactions Applied Catalysis a: General. 511: 1-10. DOI: 10.1016/j.apcata.2015.11.044  0.8
2016 Zhang Z, Feng Y, Ren B, Hagiwara I. Exploratory study of spiral NC tool path generation on triangular mesh based on local subdivision International Journal of Advanced Manufacturing Technology. 83: 835-845. DOI: 10.1007/s00170-015-7640-y  0.8
2016 Li M, Lv R, Huang S, Dai Y, Zeng Z, Wang L, Ren B. Electrochemical fabrication of silver tips for tip-enhanced Raman spectroscopy assisted by a machine vision system Journal of Raman Spectroscopy. DOI: 10.1002/jrs.4898  0.92
2016 Ren B, Shi L, Wang G. Polarimetric target detection using statistic of the degree of polarization Progress in Electromagnetics Research M. 46: 143-152.  0.92
2015 Zhang J, Tan M, Yin Y, Ren B, Jiang N, Guo G, Chen Y. Distinct Functions of Endophilin Isoforms in Synaptic Vesicle Endocytosis. Neural Plasticity. 2015: 371496. PMID 26682072 DOI: 10.1155/2015/371496  0.92
2015 Xiang T, Ren B, Yang ZB, Sun BG, Chen ZX, Chen Y, Zhang SJ. [Exploring the Correlation between Pi and Shen from the Excretion of AA-I and Expressions of Or- ganic Anion Transporting Polypeptide 2al and 2 b1 in Pi Deficiency Model Rats]. Zhongguo Zhong Xi Yi Jie He Za Zhi Zhongguo Zhongxiyi Jiehe Zazhi = Chinese Journal of Integrated Traditional and Western Medicine / Zhongguo Zhong Xi Yi Jie He Xue Hui, Zhongguo Zhong Yi Yan Jiu Yuan Zhu Ban. 35: 1255-60. PMID 26677680  0.92
2015 Qu Y, Ren B, Chang X, Zhang J, Li Y, Duan H, Cheng K, Wang J. Morphologic Study of Superior Temporal Sulcus-Amygdaloid Body and Lateral Fissure-Amygdaloid Body Surgical Approach by Using Magnetic Resonance Imaging Volume Rendering. The Journal of Craniofacial Surgery. PMID 26674919 DOI: 10.1097/SCS.0000000000002340  0.92
2015 Wang X, Zhong JH, Zhang M, Liu Z, Wu DY, Ren B. Revealing Intermolecular Interaction and Surface Restructuring of an Aromatic Thiol Assembling on Au(111) by Tip-enhanced Raman Spectroscopy. Analytical Chemistry. PMID 26633597 DOI: 10.1021/acs.analchem.5b03588  0.92
2015 Wang Y, Ren BU, Zhang L, Guo Z. Correlation between metabolic enzyme GSTP1 polymorphisms and susceptibility to lung cancer. Experimental and Therapeutic Medicine. 10: 1521-1527. PMID 26622518 DOI: 10.3892/etm.2015.2666  1
2015 Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, ... Ren B, et al. Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. PMID 26605523 DOI: 10.1038/Nature16179  1
2015 Kanduri K, Tripathi S, Larjo A, Mannerström H, Ullah U, Lund R, Hawkins RD, Ren B, Lähdesmäki H, Lahesmaa R. Identification of global regulators of T-helper cell lineage specification. Genome Medicine. 7: 122. PMID 26589177 DOI: 10.1186/S13073-015-0237-0  1
2015 Ren B, Yue F. Transcriptional Enhancers: Bridging the Genome and Phenome. Cold Spring Harbor Symposia On Quantitative Biology. PMID 26582789 DOI: 10.1101/Sqb.2015.80.027219  1
2015 Ren BB, Yuan W, Sun JQ, Chen RS, Wang J. [Impact of artificial reef on community of macrobenthos in Jincheng area of Laizhou Bay, China]. Ying Yong Sheng Tai Xue Bao = the Journal of Applied Ecology / Zhongguo Sheng Tai Xue Xue Hui, Zhongguo Ke Xue Yuan Shenyang Ying Yong Sheng Tai Yan Jiu Suo Zhu Ban. 26: 1863-70. PMID 26572043  1
2015 Zhao W, Guan C, Feng J, Liang Y, Zhan N, Zuo J, Ren B. The Arabidopsis Crowded Nuclei genes regulate seed germination by modulating degradation of ABI5 protein. Journal of Integrative Plant Biology. PMID 26564029 DOI: 10.1111/jipb.12448  0.72
2015 Wei X, Ren B, Lin D, Luo B, Fu X, Li C, Xia H, Xiao X, Yu P. Serum soluble major histocompatibility complex class I-related chain A/B expression in patients with alcoholic liver disease in Hainan Li community. International Journal of Clinical and Experimental Medicine. 8: 13928-36. PMID 26550349  0.92
2015 Zhang G, Na Z, Ren B, Zhao X, Liu W. Impacts of fluorescent superparamagnetic iron oxide (SPIO)-labeled materials on biological characteristics and osteogenesis of bone marrow mesenchymal stem cells (BMSCs). International Journal of Clinical and Experimental Medicine. 8: 12172-81. PMID 26550127  0.92
2015 Selvaraj S, Schmitt AD, Dixon JR, Ren B. Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq. Bmc Genomics. 16: 900. PMID 26541200 DOI: 10.1186/S12864-015-1949-7  1
2015 Yang LK, Huang TX, Zeng ZC, Li MH, Wang X, Yang FZ, Ren B. Rational fabrication of a gold-coated AFM TERS tip by pulsed electrodeposition. Nanoscale. PMID 26482226 DOI: 10.1039/c5nr04263a  0.92
2015 Ren B, McKinstry WJ, Pham T, Newman J, Layton DS, Bean AG, Chen Z, Laurie KL, Borg K, Barr IG, Adams TE. Structural and functional characterisation of ferret interleukin-2. Developmental and Comparative Immunology. PMID 26472619 DOI: 10.1016/j.dci.2015.10.007  0.72
2015 Ren B, Bai P, Li T, Guo H, Wang B, Zhang S, Cheng K, Li Y. Anatomic Landmarks for Localization of the Vertical Segment of Facial Nerve on Multislice CT Multiplanar Reconstruction Images. The Journal of Craniofacial Surgery. 26: 2193-2195. PMID 26468809 DOI: 10.1097/SCS.0000000000001448  0.92
2015 Liu F, Hon GC, Villa GR, Turner KM, Ikegami S, Yang H, Ye Z, Li B, Kuan S, Lee AY, Zanca C, Wei B, Lucey G, Jenkins D, Zhang W, ... ... Ren B, et al. EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling. Molecular Cell. PMID 26455392 DOI: 10.1016/J.Molcel.2015.09.002  1
2015 Zeng D, Zhou S, Ren B, Chen T. Bioaccumulation of Antimony and Arsenic in Vegetables and Health Risk Assessment in the Superlarge Antimony-Mining Area, China. Journal of Analytical Methods in Chemistry. 2015: 909724. PMID 26442167 DOI: 10.1155/2015/909724  0.8
2015 Huang X, Wang X, Lu SM, Chen C, Wang J, Zheng YY, Ren BH, Xu L. Clinicopathological and prognostic significance of MUC4 expression in cancers: evidence from meta-analysis. International Journal of Clinical and Experimental Medicine. 8: 10274-83. PMID 26379819  0.92
2015 Zeng ZC, Huang SC, Wu DY, Meng LY, Li MH, Huang TX, Zhong JH, Wang X, Yang ZL, Ren B. Electrochemical Tip-Enhanced Raman Spectroscopy. Journal of the American Chemical Society. PMID 26351986 DOI: 10.1021/jacs.5b08143  0.92
2015 Zong C, Chen CJ, Zhang M, Wu DY, Ren B. Transient Electrochemical Surface-Enhanced Raman Spectroscopy: A Millisecond Time-Resolved Study of an Electrochemical Redox Process. Journal of the American Chemical Society. PMID 26325244 DOI: 10.1021/jacs.5b07197  0.92
2015 Huang TX, Huang SC, Li MH, Zeng ZC, Wang X, Ren B. Tip-enhanced Raman spectroscopy: tip-related issues. Analytical and Bioanalytical Chemistry. PMID 26314483 DOI: 10.1007/s00216-015-8968-8  0.92
2015 Dong R, Li J, Rozen I, Ezhilan B, Xu T, Christianson C, Gao W, Saintillan D, Ren B, Wang J. Vapor-Driven Propulsion of Catalytic Micromotors. Scientific Reports. 5: 13226. PMID 26285032 DOI: 10.1038/Srep13226  1
2015 Yang H, He LQ, Hu YW, Lu X, Li GR, Liu B, Ren B, Tong Y, Fang PP. Quantitative Detection of Photothermal and Photoelectrocatalytic Effects Induced by SPR from Au@Pt Nanoparticles. Angewandte Chemie (International Ed. in English). PMID 26278278 DOI: 10.1002/anie.201505985  0.92
2015 Guo Y, Xu Q, Canzio D, Shou J, Li J, Gorkin DU, Jung I, Wu H, Zhai Y, Tang Y, Lu Y, Wu Y, Jia Z, Li W, Zhang MQ, ... Ren B, et al. CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function. Cell. 162: 900-10. PMID 26276636 DOI: 10.1016/J.Cell.2015.07.038  1
2015 Pugacheva EM, Rivero-Hinojosa S, Espinoza CA, Méndez-Catalá CF, Kang S, Suzuki T, Kosaka-Suzuki N, Robinson S, Nagarajan V, Ye Z, Boukaba A, Rasko JE, Strunnikov AV, Loukinov D, Ren B, et al. Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions. Genome Biology. 16: 161. PMID 26268681 DOI: 10.1186/S13059-015-0736-8  1
2015 Huo SX, Liu Q, Cao SH, Cai WP, Meng LY, Xie KX, Zhai YY, Zong C, Yang ZL, Ren B, Li YQ. Surface Plasmon-Coupled Directional Enhanced Raman Scattering by Means of the Reverse Kretschmann Configuration. The Journal of Physical Chemistry Letters. 6: 2015-9. PMID 26266494 DOI: 10.1021/acs.jpclett.5b00666  0.92
2015 Wang XY, Ren BW, Yong ZH, Xu HY, Fu QX, Yao HB. Mutation analysis of CACNA1S and SCN4A in patients with hypokalemic periodic paralysis. Molecular Medicine Reports. 12: 6267-74. PMID 26252573 DOI: 10.3892/mmr.2015.4201  0.92
2015 Ren B, Fan HN, Deng Y, Wang HJ, Ren L. [Effect of Echinococcus multilocularis Cyst Fluid on the Expression of Five MAPK-pathway Genes of Rat Hepatic Stellate Cells]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi = Chinese Journal of Parasitology & Parasitic Diseases. 33: 114-7, 121. PMID 26245121  0.72
2015 Tang L, Deng B, Shi L, Wei B, Ren B, Fu X. Effect of Luteolin on 11Beta-Hydroxysteroid Dehydrogenase in Rat Liver and Kidney. Evidence-Based Complementary and Alternative Medicine : Ecam. 2015: 834124. PMID 26199637 DOI: 10.1155/2015/834124  0.92
2015 Huang J, Guo M, Ke H, Zong C, Ren B, Liu G, Shen H, Ma Y, Wang X, Zhang H, Deng Z, Chen H, Zhang Z. Rational Design and Synthesis of γFe2 O3 @Au Magnetic Gold Nanoflowers for Efficient Cancer Theranostics. Advanced Materials (Deerfield Beach, Fla.). PMID 26198387 DOI: 10.1002/adma.201501942  0.92
2015 Hu CW, Yin GF, Wang XR, Ren BW, Zhang WG, Bai QL, Lv YM, Li WL, Zhao WQ. IL-24 Induces Apoptosis via Upregulation of RNA-Activated Protein Kinase and Enhances Temozolomide-Induced Apoptosis in Glioma Cells. Oncology Research. 22: 159-65. PMID 26168134 DOI: 10.3727/096504015X14298122915628  0.92
2015 Ren B, Wang Q, Chen Y, Ding W, Zheng X. Analysis of the Metals in Soil-Water Interface in a Manganese Mine. Journal of Analytical Methods in Chemistry. 2015: 163163. PMID 26167333 DOI: 10.1155/2015/163163  0.92
2015 Ishii H, Kadonaga JT, Ren B. MPE-seq, a new method for the genome-wide analysis of chromatin structure. Proceedings of the National Academy of Sciences of the United States of America. 112: E3457-65. PMID 26080409 DOI: 10.1073/Pnas.1424804112  1
2015 Meng L, Huang T, Wang X, Chen S, Yang Z, Ren B. Gold-coated AFM tips for tip-enhanced Raman spectroscopy: theoretical calculation and experimental demonstration. Optics Express. 23: 13804-13. PMID 26072752 DOI: 10.1364/OE.23.013804  0.92
2015 Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, ... Ren B, et al. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 523: 212-6. PMID 26030523 DOI: 10.1038/Nature14465  1
2015 Ren B, Dixon JR. A CRISPR Connection between Chromatin Topology and Genetic Disorders. Cell. 161: 955-7. PMID 26000472 DOI: 10.1016/J.Cell.2015.04.047  1
2015 Hao G, Shi F, Cheng H, Ren B, Chang B. Photoemission performance of thin graded structure AlGaN photocathode. Applied Optics. 54: 2572-6. PMID 25967161  0.68
2015 Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, ... ... Ren B, et al. An alternative pluripotent state confers interspecies chimaeric competency. Nature. 521: 316-21. PMID 25945737 DOI: 10.1038/Nature14413  1
2015 Shen W, Lin X, Jiang C, Li C, Lin H, Huang J, Wang S, Liu G, Yan X, Zhong Q, Ren B. Reliable Quantitative SERS Analysis Facilitated by Core-Shell Nanoparticles with Embedded Internal Standards. Angewandte Chemie (International Ed. in English). 54: 7308-12. PMID 25939998 DOI: 10.1002/Anie.201502171  0.92
2015 Hu C, Zhang T, Ren B, Deng Z, Cai L, Lei J, Ping A. Effect of vacuum-assisted closure combined with open bone grafting to promote rabbit bone graft vascularization. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 21: 1200-6. PMID 25913359 DOI: 10.12659/MSM.892939  0.92
2015 He W, Ren B, Mao F, Jing Z, Li Y, Liu Y, Peng B, Yan H, Qi Y, Sun Y, Guo JT, Sui J, Wang F, Li W. Hepatitis D Virus Infection of Mice Expressing Human Sodium Taurocholate Co-transporting Polypeptide. Plos Pathogens. 11: e1004840. PMID 25902143 DOI: 10.1371/journal.ppat.1004840  0.72
2015 Zheng X, Zong C, Xu M, Wang X, Ren B. Raman Imaging from Microscopy to Nanoscopy, and to Macroscopy. Small (Weinheim An Der Bergstrasse, Germany). 11: 3395-406. PMID 25873340 DOI: 10.1002/smll.201403804  0.92
2015 Wang A, Yue F, Li Y, Xie R, Harper T, Patel NA, Muth K, Palmer J, Qiu Y, Wang J, Lam DK, Raum JC, Stoffers DA, Ren B, Sander M. Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates. Cell Stem Cell. 16: 386-99. PMID 25842977 DOI: 10.1016/J.Stem.2015.02.013  1
2015 Xu LJ, Lei ZC, Li J, Zong C, Yang CJ, Ren B. Label-free surface-enhanced Raman spectroscopy detection of DNA with single-base sensitivity. Journal of the American Chemical Society. 137: 5149-54. PMID 25835155 DOI: 10.1021/jacs.5b01426  0.92
2015 Liu XX, Yu DD, Chen MJ, Sun T, Li G, Huang WJ, Nie H, Wang C, Zhang YX, Gong Q, Ren BX. Hesperidin ameliorates lipopolysaccharide-induced acute lung injury in mice by inhibiting HMGB1 release. International Immunopharmacology. 25: 370-6. PMID 25724384 DOI: 10.1016/j.intimp.2015.02.022  0.8
2015 Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, ... ... Ren B, et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4. PMID 25693566 DOI: 10.1038/Nature14217  1
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Ren B, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.4
2015 Ren B, Jia X, Meng X, Li L. Intestinal obstruction due to axial torsion of a giant Meckel's diverticulum: a case report. International Journal of Colorectal Disease. PMID 25564346 DOI: 10.1007/s00384-014-2107-4  0.72
2015 Ren B, Li X, Zhang J, Fan J, Duan J, Chen Y. PDLIM5 mediates PKCε translocation in PMA-induced growth cone collapse. Cellular Signalling. 27: 424-35. PMID 25524223 DOI: 10.1016/j.cellsig.2014.12.005  0.8
2015 Liu BJ, Lin KQ, Hu S, Wang X, Lei ZC, Lin HX, Ren B. Extraction of absorption and scattering contribution of metallic nanoparticles toward rational synthesis and application. Analytical Chemistry. 87: 1058-65. PMID 25494875 DOI: 10.1021/ac503612b  0.92
2015 Ren B, Zhang YX, Zhou HX, Sun FW, Zhang ZF, Wei Z, Zhang CY, Si DW. Tanshinone IIA prevents the loss of nigrostriatal dopaminergic neurons by inhibiting NADPH oxidase and iNOS in the MPTP model of Parkinson's disease. Journal of the Neurological Sciences. 348: 142-52. PMID 25491263 DOI: 10.1016/J.Jns.2014.11.026  1
2015 Jiang Y, Ren B, Lv X, Zhang W, Li W, Xu G. Design, synthesis and antifungal activity of novel paeonol derivatives linked with 1,2,3-triazole moiety by the click reaction Journal of Chemical Research. 39: 243-246. DOI: 10.3184/174751915X14284938334623  0.8
2015 Wang X, Qiao B, Li S, Li J, Ren B. Studies on the interception effects of ecological ditch on nitrogen and phosphorus in the rainfall runoff of different rice growth period Shuili Xuebao/Journal of Hydraulic Engineering. 46: 1406-1413. DOI: 10.13243/j.cnki.slxb.20150552  0.68
2015 Yang YE, Yan TT, Ren BS. Microwave evaluation of direction and bending defect of carbon fiber in composite material Hangkong Cailiao Xuebao/Journal of Aeronautical Materials. 35: 91-96. DOI: 10.11868/j.issn.1005-5053.2015.6.015  0.92
2015 Ren B, Li X. Some inequalities related to two expansions of (1 + 1/x)x Journal of Inequalities and Applications. 2015: 1-8. DOI: 10.1186/s13660-015-0928-5  1
2015 Zhu Y, Selvaraj S, Weber P, Fang J, Schulze JP, Ren B. 3D chromosome rendering from Hi-C data using virtual reality Proceedings of Spie - the International Society For Optical Engineering. 9397. DOI: 10.1117/12.2083470  1
2015 Liu H, Ren B, Li S, Guan X, Wen P, Xiao X, Peng Y. High-Temperature Superconducting Bandpass Filter Using Asymmetric Stepped-Impedance Resonators with Wide-Stopband Performance Ieee Transactions On Applied Superconductivity. 25. DOI: 10.1109/TASC.2015.2445211  0.72
2015 Hou B, Ren B, Ju G, Li H, Jiao L, Zhao J. SAR Image Classification via Hierarchical Sparse Representation and Multisize Patch Features Ieee Geoscience and Remote Sensing Letters. DOI: 10.1109/LGRS.2015.2493242  0.8
2015 Wang L, Mao ZQ, Sun ZC, Luo XP, Deng RS, Zhang YH, Ren B. Cation exchange capacity (Qv) estimation in shaly sand reservoirs: Case studies in the Junggar Basin, northwest China Journal of Geophysics and Engineering. 12: 745-752. DOI: 10.1088/1742-2132/12/5/745  0.68
2015 Liu XZ, Yu J, Ren B. New solutions from nonlocal symmetry of the generalized fifth order KdV equation Chinese Physics B. 24. DOI: 10.1088/1674-1056/24/8/080202  0.8
2015 Ren B, Wang Y, Zhong QC. UDE-based control of variable-speed wind turbine systems International Journal of Control. 1-16. DOI: 10.1080/00207179.2015.1126678  0.6
2015 Zeng Z, Ren B, Xu Q, Lin D, Di W, Luo H, Wang D. Excellent performances of energy harvester using cantilever driving double-clamped 0.7Pb(Mg1/3Nb2/3)O3-0.3PbTiO3 plates and symmetric middle-stops Applied Physics Letters. 107. DOI: 10.1063/1.4934700  0.92
2015 Chen JJ, Yuan RM, Feng JM, Zhang Q, Huang JX, Fu G, Zheng MS, Ren B, Dong QF. Conductive lewis base matrix to recover the missing link of Li2S8 during the sulfur redox cycle in Li-S battery Chemistry of Materials. 27: 2048-2055. DOI: 10.1021/cm5044667  0.92
2015 Liu BW, Yao X, Zhang L, Lin HX, Chen S, Zhong JH, Liu S, Wang L, Ren B. Efficient Platform for Flexible Engineering of Superradiant, Fano-Type, and Subradiant Resonances Acs Photonics. 2: 1725-1731. DOI: 10.1021/acsphotonics.5b00650  0.92
2015 Zhang W, He X, Ren B, Jiang Y, Hu Z. Cu(OAc)2·H2O - An efficient catalyst for Huisgen-click reaction in supercritical carbon dioxide Tetrahedron Letters. 56: 2472-2475. DOI: 10.1016/j.tetlet.2015.03.102  0.8
2015 Wu B, Ge J, Ren B, Pei Z, Dong H. Synthesis and binding affinity analysis of positional thiol analogs of mannopyranose for the elucidation of sulfur in different position Tetrahedron. 71: 4023-4030. DOI: 10.1016/j.tet.2015.04.060  0.72
2015 Ren B, Sun J, Bai S. Phase transformation and morphology control of zeolite LZ-277 with alkaline media in Na2O-Al2O3-SiO2-H2O system Microporous and Mesoporous Materials. 201: 228-233. DOI: 10.1016/j.micromeso.2014.09.007  0.8
2015 Ren B, Zhang L, Tang C, Dong L, Li J. Construction of hierarchical MgAl2O4 spinel as catalytic supports Materials Letters. 159: 204-206. DOI: 10.1016/j.matlet.2015.07.007  0.8
2015 Ren B, Zhang L, Huang H, Ren S, Chen G, Zhang H. Performance evaluation and mechanisms study of near-miscible CO2 flooding in a tight oil reservoir of Jilin Oilfield China Journal of Natural Gas Science and Engineering. DOI: 10.1016/j.jngse.2015.11.005  0.92
2015 Yi H, Song Y, Liu C, Huang X, Zhang L, Bai Y, Ren B, Shi Y, Loyalka P, Chu J, Rozelle S. Giving kids a head start: The impact and mechanisms of early commitment of financial aid on poor students in rural China Journal of Development Economics. 113: 1-15. DOI: 10.1016/J.Jdeveco.2014.11.002  0.8
2015 Chen J, Li X, Zhao X, Zhang H, Deng H, Chen C, Wang X, Ren B, Di W, Luo H. Growth and characterization of high-Curie temperature Pb(Lu1/2Nb1/2)O3-Pb(Mg1/3Nb2/3)O3-PbTiO3 ternary single crystal by modified Bridgman technique Journal of Crystal Growth. 423: 50-54. DOI: 10.1016/j.jcrysgro.2015.04.031  0.8
2015 Fan H, Ren B, Li S. An adhesive contact mechanics formulation based on atomistically induced surface traction Journal of Computational Physics. 302: 420-438. DOI: 10.1016/J.Jcp.2015.08.035  0.68
2015 Ren B, Xu Y, Yan Y, Yang R, Wang J. Synthesis and electrochemical performance of spherical-like Li2FeSiO4/C/SP cathode material for lithium-ion batteries Journal of Alloys and Compounds. 633: 456-462. DOI: 10.1016/j.jallcom.2015.01.108  1
2015 Fan M, Ren B, Yu L, Song D, Liu Q, Liu J, Wang J, Jing X, Liu L. Facile synthesis of Co3O4 nanowires grown on hollow NiO microspheres with superior electrochemical performance Electrochimica Acta. 166: 168-173. DOI: 10.1016/j.electacta.2015.03.090  0.92
2015 Wu CT, Ren B. A stabilized non-ordinary state-based peridynamics for the nonlocal ductile material failure analysis in metal machining process Computer Methods in Applied Mechanics and Engineering. 291: 197-215. DOI: 10.1016/j.cma.2015.03.003  1
2015 Wang X, Qiu G, Ge Y, Zheng W, Kong L, Xue Y, Ren B, Peng Y. Highly selective magnetic polymer particles via molecular imprinting Korean Journal of Chemical Engineering. 32: 2355-2360. DOI: 10.1007/s11814-015-0055-5  0.72
2015 Chen J, Li X, Zhao X, Wang X, Chen C, Deng H, Ren B, Jiao J, Luo H. Compositional segregation, structural transformation and property-temperature relationship of high-Curie temperature Pb(In1/2Nb1/2)O3–Pb(Mg1/3Nb2/3)O3–PbTiO3 single crystals Journal of Materials Science: Materials in Electronics. 26: 9316-9328. DOI: 10.1007/s10854-015-3023-2  0.92
2015 Cao N, Ren B, Zheng J. Evaluation of CMIP5 climate models in simulating 1979–2005 oceanic latent heat flux over the Pacific Advances in Atmospheric Sciences. 32: 1603-1616. DOI: 10.1007/s00376-015-5016-8  0.92
2015 Huang TX, Huang SC, Li MH, Zeng ZC, Wang X, Ren B. Tip-enhanced Raman spectroscopy: tip-related issues Analytical and Bioanalytical Chemistry. DOI: 10.1007/s00216-015-8968-8  0.92
2015 Zhang Y, Wang KJ, Zhang YJ, Du J, Li DB, Ren BJ, Wu J. Synthesis of dimethyl ether from CO2 hydrogenation over La1- yZryCu0.7Zn0.3Ox/HZSM-5 catalysts Journal of Molecular Catalysis. 29: 525-533.  0.92
2015 Wei X, Ren B, Lin D, Luo B, Fu X, Li C, Xia H, Xiao X, Yu P. Serum soluble major histocompatibility complex class i-related chain A/B expression in patients with alcoholic liver disease in Hainan Li community International Journal of Clinical and Experimental Medicine. 8: 13928-13936.  0.68
2015 Yan Y, Wang J, Wang L, Lu Z, Ren B, Xu Y. Influence of pH and CTAB on luminescent property of hydrothermally synthesized GdVO4: Eu3+ phosphors Cailiao Yanjiu Xuebao/Chinese Journal of Materials Research. 29: 307-314.  1
2014 Liu F, Teng HH, Ren BX, Shi SY. [Research advances in eco-toxicological diagnosis of soil pollution]. Ying Yong Sheng Tai Xue Bao = the Journal of Applied Ecology / Zhongguo Sheng Tai Xue Xue Hui, Zhongguo Ke Xue Yuan Shenyang Ying Yong Sheng Tai Yan Jiu Suo Zhu Ban. 25: 2733-44. PMID 25757329  0.72
2014 Li Y, Rivera CM, Ishii H, Jin F, Selvaraj S, Lee AY, Dixon JR, Ren B. CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells. Plos One. 9: e114485. PMID 25486255 DOI: 10.1371/Journal.Pone.0114485  1
2014 Zheng XS, Hu P, Cui Y, Zong C, Feng JM, Wang X, Ren B. BSA-coated nanoparticles for improved SERS-based intracellular pH sensing. Analytical Chemistry. 86: 12250-7. PMID 25418952 DOI: 10.1021/ac503404u  0.92
2014 Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, ... ... Ren B, et al. Topologically associating domains are stable units of replication-timing regulation. Nature. 515: 402-5. PMID 25409831 DOI: 10.1038/Nature13986  1
2014 Zhong JH, Zhang J, Jin X, Liu JY, Li Q, Li MH, Cai W, Wu DY, Zhan D, Ren B. Quantitative correlation between defect density and heterogeneous electron transfer rate of single layer graphene. Journal of the American Chemical Society. 136: 16609-17. PMID 25350471 DOI: 10.1021/ja508965w  0.92
2014 Hu C, Zhang T, Deng Z, Ren B, Cai L, Zhang Y, Yan L. Study on the effect of vacuum sealing drainage on the repair process of rabbit sciatic nerve injury. The International Journal of Neuroscience. PMID 25340255 DOI: 10.3109/00207454.2014.979981  1
2014 You LX, Wang SJ, Xiong G, Ding F, Meert KW, Poelman D, Smet PF, Ren BY, Tian YW, Sun YG. Synthesis, structure and properties of 2D lanthanide coordination polymers based on N-heterocyclic arylpolycarboxylate ligands. Dalton Transactions (Cambridge, England : 2003). 43: 17385-94. PMID 25331555 DOI: 10.1039/c4dt02517b  0.8
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... Ren B, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/Pnas.1410434111  1
2014 Hon GC, Song CX, Du T, Jin F, Selvaraj S, Lee AY, Yen CA, Ye Z, Mao SQ, Wang BA, Kuan S, Edsall LE, Zhao BS, Xu GL, He C, ... Ren B, et al. 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation. Molecular Cell. 56: 286-97. PMID 25263596 DOI: 10.1016/J.Molcel.2014.08.026  1
2014 Yu YP, Ding Y, Chen Z, Liu S, Michalopoulos A, Chen R, Gulzar ZG, Yang B, Cieply KM, Luvison A, Ren BG, Brooks JD, Jarrard D, Nelson JB, Michalopoulos GK, et al. Novel fusion transcripts associate with progressive prostate cancer. The American Journal of Pathology. 184: 2840-9. PMID 25238935 DOI: 10.1016/j.ajpath.2014.06.025  0.6
2014 Liu M, Zhang L, Ren B, Yang N, Yu X, Wang J, Ding L, Liu X, Liu Z, Goodfellow M, Zhang L. Prauserella shujinwangii sp. nov., from a desert environment. International Journal of Systematic and Evolutionary Microbiology. 64: 3833-7. PMID 25158847 DOI: 10.1099/ijs.0.065425-0  1
2014 He J, Li X, Li Y, Ren B, Sun J, Zhang W, Li W. Lack of association between the 389C>T polymorphism (rs769217) in the catalase (CAT) gene and the risk of vitiligo: An update by meta-analysis. The Australasian Journal of Dermatology. PMID 25139332 DOI: 10.1111/ajd.12204  1
2014 Guo H, Ren B, Dai H, Dai S, Zhang Y, Liu Y, Cao B, Zhang L. Reversal of meticillin resistance in Staphylococcus aureus by the anthelmintic avermectin. International Journal of Antimicrobial Agents. 44: 274-6. PMID 25123810 DOI: 10.1016/j.ijantimicag.2014.05.002  1
2014 Rajagopal N, Ernst J, Ray P, Wu J, Zhang M, Kellis M, Ren B. Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3 (Bethesda, Md.). 4: 2051-63. PMID 25122670 DOI: 10.1534/G3.114.013565  1
2014 Tian Y, Wang J, Yang S, Qiao L, Li P, Gao X, Ju Y, Yan X, Ren B, Yang Y. [Clinical observation on removal of small foreign bodies touching the optic nerve in the deep orbital region]. [Zhonghua Yan Ke Za Zhi] Chinese Journal of Ophthalmology. 50: 360-3. PMID 25052806 DOI: 10.3760/Cma.J.Issn.0412-4081.2014.05.011  1
2014 Ren BZ, Zhang JW, Li X, Fan X, Dong ST, Zhao B, Liu P. [Effect of waterlogging on leaf senescence characteristics of summer maize in the field]. Ying Yong Sheng Tai Xue Bao = the Journal of Applied Ecology / Zhongguo Sheng Tai Xue Xue Hui, Zhongguo Ke Xue Yuan Shenyang Ying Yong Sheng Tai Yan Jiu Suo Zhu Ban. 25: 1022-8. PMID 25011294  1
2014 Gorkin DU, Leung D, Ren B. The 3D genome in transcriptional regulation and pluripotency. Cell Stem Cell. 14: 762-75. PMID 24905166 DOI: 10.1016/J.Stem.2014.05.017  1
2014 Leung D, Du T, Wagner U, Xie W, Lee AY, Goyal P, Li Y, Szulwach KE, Jin P, Lorincz MC, Ren B. Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1. Proceedings of the National Academy of Sciences of the United States of America. 111: 6690-5. PMID 24757056 DOI: 10.1073/Pnas.1322273111  1
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... Ren B, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/Pnas.1318948111  1
2014 Attanasio C, Nord AS, Zhu Y, Blow MJ, Biddie SC, Mendenhall EM, Dixon J, Wright C, Hosseini R, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Afzal V, Ren B, et al. Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis. Genome Research. 24: 920-9. PMID 24752179 DOI: 10.1101/Gr.168930.113  1
2014 Yang X, Gu J, Yan H, Xu Z, Ren B, Yang Y, Yang X, Chen Q, Tan S. The highly-cited Electrocardiogram-related articles in science citation index expanded: characteristics and hotspots. Journal of Electrocardiology. 47: 738-44. PMID 24742585 DOI: 10.1016/J.Jelectrocard.2014.03.005  1
2014 Hale JS, Otvos B, Sinyuk M, Alvarado AG, Hitomi M, Stoltz K, Wu Q, Flavahan W, Levison B, Johansen ML, Schmitt D, Neltner JM, Huang P, Ren B, Sloan AE, et al. Cancer stem cell-specific scavenger receptor 36 drives glioblastoma progression. Stem Cells (Dayton, Ohio). 32: 1746-58. PMID 24737733 DOI: 10.1002/Stem.1716  0.36
2014 Ren BC, Deng FG. Hyper-parallel photonic quantum computation with coupled quantum dots. Scientific Reports. 4: 4623. PMID 24721781 DOI: 10.1038/srep04623  1
2014 Dai L, Peng C, Montellier E, Lu Z, Chen Y, Ishii H, Debernardi A, Buchou T, Rousseaux S, Jin F, Sabari BR, Deng Z, Allis CD, Ren B, Khochbin S, et al. Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark. Nature Chemical Biology. 10: 365-70. PMID 24681537 DOI: 10.1038/Nchembio.1497  1
2014 Gorkin DU, Ren B. Genetics: Closing the distance on obesity culprits. Nature. 507: 309-10. PMID 24646989 DOI: 10.1038/Nature13212  1
2014 Zuin J, Dixon JR, van der Reijden MI, Ye Z, Kolovos P, Brouwer RW, van de Corput MP, van de Werken HJ, Knoch TA, van IJcken WF, Grosveld FG, Ren B, Wendt KS. Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 996-1001. PMID 24335803 DOI: 10.1073/Pnas.1317788111  1
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... Ren B, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112  1
2014 Wang X, Lu Z, Gomez A, Hon GC, Yue Y, Han D, Fu Y, Parisien M, Dai Q, Jia G, Ren B, Pan T, He C. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature. 505: 117-20. PMID 24284625 DOI: 10.1038/Nature12730  1
2014 Ren B, Cao W. Neuromuscular and vascular hamartoma: is it a true hamartoma? Journal of Clinical Pathology. 67: 284-7. PMID 24265324 DOI: 10.1136/Jclinpath-2013-201913  0.72
2014 Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, et al. Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells Nature. 514: 126. DOI: 10.1038/Nature13843  1
2013 Selvaraj S, R Dixon J, Bansal V, Ren B. Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing. Nature Biotechnology. 31: 1111-8. PMID 24185094 DOI: 10.1038/Nbt.2728  1
2013 Attanasio C, Nord AS, Zhu Y, Blow MJ, Li Z, Liberton DK, Morrison H, Plajzer-Frick I, Holt A, Hosseini R, Phouanenavong S, Akiyama JA, Shoukry M, Afzal V, Rubin EM, ... ... Ren B, et al. Fine tuning of craniofacial morphology by distant-acting enhancers. Science (New York, N.Y.). 342: 1241006. PMID 24159046 DOI: 10.1126/Science.1241006  1
2013 Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B. A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature. 503: 290-4. PMID 24141950 DOI: 10.1038/Nature12644  1
2013 Ren B, Zakharov V, Yang Q, McMahon L, Yu J, Cao W. MACC1 is related to colorectal cancer initiation and early-stage invasive growth American Journal of Clinical Pathology. 140: 701-707. PMID 24124150 DOI: 10.1309/Ajcprh1H5Rwwsxrb  0.72
2013 Rivera CM, Ren B. Mapping human epigenomes. Cell. 155: 39-55. PMID 24074860 DOI: 10.1016/J.Cell.2013.09.011  1
2013 Hon GC, Rajagopal N, Shen Y, McCleary DF, Yue F, Dang MD, Ren B. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nature Genetics. 45: 1198-206. PMID 23995138 DOI: 10.1038/Ng.2746  1
2013 Xie W, Ren B. Developmental biology. Enhancing pluripotency and lineage specification. Science (New York, N.Y.). 341: 245-7. PMID 23869010 DOI: 10.1126/Science.1236254  1
2013 Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, ... ... Ren B, et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife. 2: e00675. PMID 23795294 DOI: 10.7554/Elife.00675  1
2013 Hawkins RD, Larjo A, Tripathi SK, Wagner U, Luu Y, Lönnberg T, Raghav SK, Lee LK, Lund R, Ren B, Lähdesmäki H, Lahesmaa R. Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization. Immunity. 38: 1271-84. PMID 23791644 DOI: 10.1016/J.Immuni.2013.05.011  1
2013 Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Ren B, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022  1
2013 Zakharov V, Ren B, Ryan C, Cao W. Diagnostic value of HMGAs, p53 and β-catenin in discriminating adenocarcinoma from adenoma or reactive atypia in ampulla and common bile duct biopsies. Histopathology. 62: 778-87. PMID 23530587 DOI: 10.1111/His.12084  0.72
2013 Rajagopal N, Xie W, Li Y, Wagner U, Wang W, Stamatoyannopoulos J, Ernst J, Kellis M, Ren B. RFECS: a random-forest based algorithm for enhancer identification from chromatin state. Plos Computational Biology. 9: e1002968. PMID 23526891 DOI: 10.1371/Journal.Pcbi.1002968  1
2013 Won KJ, Zhang X, Wang T, Ding B, Raha D, Snyder M, Ren B, Wang W. Comparative annotation of functional regions in the human genome using epigenomic data. Nucleic Acids Research. 41: 4423-32. PMID 23482391 DOI: 10.1093/Nar/Gkt143  1
2013 Smallwood A, Ren B. Genome organization and long-range regulation of gene expression by enhancers. Current Opinion in Cell Biology. 25: 387-94. PMID 23465541 DOI: 10.1016/J.Ceb.2013.02.005  1
2013 Zhang L, Szulwach KE, Hon GC, Song CX, Park B, Yu M, Lu X, Dai Q, Wang X, Street CR, Tan H, Min JH, Ren B, Jin P, He C. Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing. Nature Communications. 4: 1517. PMID 23443545 DOI: 10.1038/Ncomms2527  1
2013 Hu M, Deng K, Qin Z, Dixon J, Selvaraj S, Fang J, Ren B, Liu JS. Bayesian inference of spatial organizations of chromosomes. Plos Computational Biology. 9: e1002893. PMID 23382666 DOI: 10.1371/Journal.Pcbi.1002893  1
2013 Sawan C, Hernandez-Vargas H, Murr R, Lopez F, Vaissière T, Ghantous AY, Cuenin C, Imbert J, Wang ZQ, Ren B, Herceg Z. Histone acetyltransferase cofactor Trrap maintains self-renewal and restricts differentiation of embryonic stem cells. Stem Cells (Dayton, Ohio). 31: 979-91. PMID 23362228 DOI: 10.1002/Stem.1341  1
2012 Yu M, Hon GC, Szulwach KE, Song CX, Jin P, Ren B, He C. Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine. Nature Protocols. 7: 2159-70. PMID 23196972 DOI: 10.1038/Nprot.2012.137  1
2012 Liu GH, Qu J, Suzuki K, Nivet E, Li M, Montserrat N, Yi F, Xu X, Ruiz S, Zhang W, Wagner U, Kim A, Ren B, Li Y, Goebl A, et al. Progressive degeneration of human neural stem cells caused by pathogenic LRRK2. Nature. 491: 603-7. PMID 23075850 DOI: 10.1038/Nature11557  1
2012 Hu M, Deng K, Selvaraj S, Qin Z, Ren B, Liu JS. HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics (Oxford, England). 28: 3131-3. PMID 23023982 DOI: 10.1093/Bioinformatics/Bts570  1
2012 Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biology. 13: 418. PMID 22889292 DOI: 10.1186/Gb-2012-13-8-418  1
2012 Ren B, Li J, Genschmer K, Hollingshead SK, Briles DE. The absence of PspA or presence of antibody to PspA facilitates the complement-dependent phagocytosis of pneumococci in vitro. Clinical and Vaccine Immunology : Cvi. 19: 1574-82. PMID 22855389 DOI: 10.1128/Cvi.00393-12  0.72
2012 Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B. A map of the cis-regulatory sequences in the mouse genome. Nature. 488: 116-20. PMID 22763441 DOI: 10.1038/Nature11243  1
2012 Lo MC, Peterson LF, Yan M, Cong X, Jin F, Shia WJ, Matsuura S, Ahn EY, Komeno Y, Ly M, Ommen HB, Chen IM, Hokland P, Willman CL, Ren B, et al. Combined gene expression and DNA occupancy profiling identifies potential therapeutic targets of t(8;21) AML. Blood. 120: 1473-84. PMID 22740448 DOI: 10.1182/Blood-2011-12-395335  1
2012 Won KJ, Xu Z, Zhang X, Whitaker JW, Shoemaker R, Ren B, Xu Y, Wang W. Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells Nucleic Acids Research. 40: 8199-8209. PMID 22730289 DOI: 10.1093/Nar/Gks584  1
2012 Smallwood A, Hon GC, Jin F, Henry RE, Espinosa JM, Ren B. CBX3 regulates efficient RNA processing genome-wide. Genome Research. 22: 1426-36. PMID 22684280 DOI: 10.1101/Gr.124818.111  1
2012 Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li X, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell. 149: 1368-80. PMID 22608086 DOI: 10.1016/J.Cell.2012.04.027  1
2012 Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 485: 376-80. PMID 22495300 DOI: 10.1038/Nature11082  1
2012 Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF. Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal. Plos Genetics. 8: e1002576. PMID 22438827 DOI: 10.1371/Journal.Pgen.1002576  1
2012 Xie W, Barr CL, Kim A, Yue F, Lee AY, Eubanks J, Dempster EL, Ren B. Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell. 148: 816-31. PMID 22341451 DOI: 10.1016/J.Cell.2011.12.035  1
2012 Jishage M, Malik S, Wagner U, Uberheide B, Ishihama Y, Hu X, Chait BT, Gnatt A, Ren B, Roeder RG. Transcriptional regulation by Pol II(G) involving mediator and competitive interactions of Gdown1 and TFIIF with Pol II. Molecular Cell. 45: 51-63. PMID 22244332 DOI: 10.1016/J.Molcel.2011.12.014  1
2012 Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, ... ... Ren B, et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Research. 22: 246-58. PMID 22156296 DOI: 10.1101/Gr.125872.111  1
2012 Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE) Genome Biology. 418. DOI: 10.1186/gb4035  1
2011 Jin F, Li Y, Ren B, Natarajan R. Enhancers: multi-dimensional signal integrators. Transcription. 2: 226-30. PMID 22231119 DOI: 10.4161/trns.2.5.17712  1
2011 Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, ... ... Ren B, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell. 146: 1016-28. PMID 21925322 DOI: 10.1016/J.Cell.2011.08.008  1
2011 Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, Ngo QM, Klugman S, Ching KA, Edsall LE, Ye Z, Kuan S, Yu P, Liu H, Zhang X, Green RD, ... ... Ren B, et al. Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency. Cell Research. 21: 1393-409. PMID 21876557 DOI: 10.1038/Cr.2011.146  1
2011 Szulwach KE, Li X, Li Y, Song CX, Han JW, Kim S, Namburi S, Hermetz K, Kim JJ, Rudd MK, Yoon YS, Ren B, He C, Jin P. Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells. Plos Genetics. 7: e1002154. PMID 21731508 DOI: 10.1371/Journal.Pgen.1002154  1
2011 Boyapati A, Ren B, Zhang DE. SERPINB13 is a novel RUNX1 target gene. Biochemical and Biophysical Research Communications. 411: 115-20. PMID 21723253 DOI: 10.1016/J.Bbrc.2011.06.107  1
2011 Espinoza CA, Ren B. Mapping higher order structure of chromatin domains. Nature Genetics. 43: 615-6. PMID 21709679 DOI: 10.1038/Ng.869  1
2011 Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, ... ... Ren B, et al. Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual. Nucleic Acids Research. 39: 6056-68. PMID 21493686 DOI: 10.1093/Nar/Gkr221  1
2011 Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, ... ... Ren B, et al. A cis-regulatory map of the Drosophila genome. Nature. 471: 527-31. PMID 21430782 DOI: 10.1038/Nature09990  1
2011 Jin F, Li Y, Ren B, Natarajan R. PU.1 and C/EBP(alpha) synergistically program distinct response to NF-kappaB activation through establishing monocyte specific enhancers. Proceedings of the National Academy of Sciences of the United States of America. 108: 5290-5. PMID 21402921 DOI: 10.1073/Pnas.1017214108  1
2011 Macfarlan TS, Gifford WD, Agarwal S, Driscoll S, Lettieri K, Wang J, Andrews SE, Franco L, Rosenfeld MG, Ren B, Pfaff SL. Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. Genes & Development. 25: 594-607. PMID 21357675 DOI: 10.1101/Gad.2008511  1
2011 Harismendy O, Notani D, Song X, Rahim NG, Tanasa B, Heintzman N, Ren B, Fu XD, Topol EJ, Rosenfeld MG, Frazer KA. 9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response. Nature. 470: 264-8. PMID 21307941 DOI: 10.1038/Nature09753  1
2011 Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 471: 68-73. PMID 21289626 DOI: 10.1038/Nature09798  1
2011 Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, ... ... Ren B, et al. An assessment of histone-modification antibody quality. Nature Structural & Molecular Biology. 18: 91-3. PMID 21131980 DOI: 10.1038/Nsmb.1972  1
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Ren B, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  1
2010 Zhao Q, Kirkness EF, Caballero OL, Galante PA, Parmigiani RB, Edsall L, Kuan S, Ye Z, Levy S, Vasconcelos AT, Ren B, de Souza SJ, Camargo AA, Simpson AJ, Strausberg RL. Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing. Genome Biology. 11: R114. PMID 21108794 DOI: 10.1186/Gb-2010-11-11-R114  1
2010 Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MA, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA. The NIH Roadmap Epigenomics Mapping Consortium. Nature Biotechnology. 28: 1045-8. PMID 20944595 DOI: 10.1038/Nbt1010-1045  1
2010 Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, ... ... Ren B, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682  1
2010 Blow MJ, McCulley DJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Bristow J, Ren B, Black BL, Rubin EM, et al. ChIP-Seq identification of weakly conserved heart enhancers. Nature Genetics. 42: 806-10. PMID 20729851 DOI: 10.1038/Ng.650  1
2010 Bazarov AV, Van Sluis M, Hines WC, Bassett E, Beliveau A, Campeau E, Mukhopadhyay R, Lee WJ, Melodyev S, Zaslavsky Y, Lee L, Rodier F, Chicas A, Lowe SW, Benhattar J, ... Ren B, et al. p16(INK4a) -mediated suppression of telomerase in normal and malignant human breast cells. Aging Cell. 9: 736-46. PMID 20569236 DOI: 10.1111/J.1474-9726.2010.00599.X  1
2010 Hawkins RD, Hon GC, Ren B. Next-generation genomics: An integrative approach Nature Reviews Genetics. 11: 476-486. PMID 20531367 DOI: 10.1038/Nrg2795  1
2010 Ren B. Transcription: Enhancers make non-coding RNA. Nature. 465: 173-4. PMID 20463730 DOI: 10.1038/465173A  1
2010 Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, ... ... Ren B, et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell. 6: 479-91. PMID 20452322 DOI: 10.1016/J.Stem.2010.03.018  1
2010 Won KJ, Ren B, Wang W. Genome-wide prediction of transcription factor binding sites using an integrated model. Genome Biology. 11: R7. PMID 20096096 DOI: 10.1186/Gb-2010-11-1-R7  1
2009 Hon G, Wang W, Ren B. Discovery and annotation of functional chromatin signatures in the human genome. Plos Computational Biology. 5: e1000566. PMID 19918365 DOI: 10.1371/Journal.Pcbi.1000566  1
2009 Heintzman ND, Ren B. Finding distal regulatory elements in the human genome Current Opinion in Genetics and Development. 19: 541-549. PMID 19854636 DOI: 10.1016/J.Gde.2009.09.006  1
2009 Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, ... ... Ren B, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 462: 315-22. PMID 19829295 DOI: 10.1038/Nature08514  1
2009 Hon GC, Hawkins RD, Ren B. Predictive chromatin signatures in the mammalian genome Human Molecular Genetics. 18: R195-R201. PMID 19808796 DOI: 10.1093/Hmg/Ddp409  1
2009 Won KJ, Agarwal S, Shen L, Shoemaker R, Ren B, Wang W. An integrated approach to identifying cis-regulatory modules in the human genome Plos One. 4. PMID 19434238 DOI: 10.1371/Journal.Pone.0005501  1
2009 Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, ... ... Ren B, et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature. 459: 108-12. PMID 19295514 DOI: 10.1038/Nature07829  1
2009 Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature. 457: 854-8. PMID 19212405 DOI: 10.1038/Nature07730  1
2008 Won KJ, Chepelev I, Ren B, Wang W. Prediction of regulatory elements in mammalian genomes using chromatin signatures Bmc Bioinformatics. 9. PMID 19094206 DOI: 10.1186/1471-2105-9-547  1
2008 Hon G, Ren B, Wang W. ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome Plos Computational Biology. 4. PMID 18927605 DOI: 10.1371/Journal.Pcbi.1000201  1
2008 Li Y, Reddy MA, Miao F, Shanmugam N, Yee JK, Hawkins D, Ren B, Natarajan R. Role of the histone H3 lysine 4 methyltransferase, SET7/9, in the regulation of NF-kappaB-dependent inflammatory genes. Relevance to diabetes and inflammation. The Journal of Biological Chemistry. 283: 26771-81. PMID 18650421 DOI: 10.1074/Jbc.M802800200  1
2008 Bibikova M, Laurent LC, Ren B, Loring JF, Fan JB. Unraveling Epigenetic Regulation in Embryonic Stem Cells Cell Stem Cell. 2: 123-134. PMID 18371433 DOI: 10.1016/J.Stem.2008.01.005  1
2008 Maynard ND, Chen J, Stuart RK, Fan JB, Ren B. Genome-wide mapping of allele-specific protein-DNA interactions in human cells. Nature Methods. 5: 307-9. PMID 18345007 DOI: 10.1038/Nmeth.1194  1
2008 Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, ... ... Ren B, et al. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Research. 18: 393-403. PMID 18258921 DOI: 10.1101/Gr.7080508  1
2008 Barrera LO, Li Z, Smith AD, Arden KC, Cavenee WK, Zhang MQ, Green RD, Ren B. Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs. Genome Research. 18: 46-59. PMID 18042645 DOI: 10.1101/Gr.6654808  1
2007 Spiteri E, Konopka G, Coppola G, Bomar J, Oldham M, Ou J, Vernes SC, Fisher SE, Ren B, Geschwind DH. Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain. American Journal of Human Genetics. 81: 1144-57. PMID 17999357 DOI: 10.1086/522237  1
2007 Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Ren B, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874  0.56
2007 Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome Nature Genetics. 39: 311-318. PMID 17277777 DOI: 10.1038/Ng1966  1
2006 Kim TH, Ren B. An all-round view of eukaryotic transcription. Genome Biology. 7: 323. PMID 16879733 DOI: 10.1186/Gb-2006-7-7-323  1
2006 Hawkins RD, Ren B. Genome-wide location analysis: insights on transcriptional regulation. Human Molecular Genetics. 15: R1-7. PMID 16651365 DOI: 10.1093/Hmg/Ddl043  1
2005 Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature. 436: 876-80. PMID 15988478 DOI: 10.1038/Nature03877  1
2005 Kim TH, Barrera LO, Qu C, Van Calcar S, Trinklein ND, Cooper SJ, Luna RM, Glass CK, Rosenfeld MG, Myers RM, Ren B. Direct isolation and identification of promoters in the human genome. Genome Research. 15: 830-9. PMID 15899964 DOI: 10.1101/Gr.3430605  1
2004 Feingold EA, Good PJ, Guyer MS, Kamholz S, Liefer L, Wetterstrand K, Collins FS, Gingeras TR, Kampa D, Sekinger EA, Cheng J, Hirsch H, Ghosh S, Zhu Z, Patel S, ... ... Ren B, et al. The ENCODE (ENCyclopedia of DNA Elements) Project Science. 306: 636-640. PMID 15499007 DOI: 10.1126/Science.1105136  1
2002 Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (New York, N.Y.). 298: 799-804. PMID 12399584 DOI: 10.1126/Science.1075090  1
2002 Ren B, Cam H, Takahashi Y, Volkert T, Terragni J, Young RA, Dynlacht BD. E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints. Genes & Development. 16: 245-56. PMID 11799067 DOI: 10.1101/Gad.949802  1
2001 Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA. Remodeling of yeast genome expression in response to environmental changes. Molecular Biology of the Cell. 12: 323-37. PMID 11179418 DOI: 10.1091/Mbc.12.2.323  1
2000 Ren B, Robert F, Wyrick JJ, Aparicio O, Jennings EG, Simon I, Zeitlinger J, Schreiber J, Hannett N, Kanin E, Volkert TL, Wilson CJ, Bell SP, Young RA. Genome-wide location and function of DNA binding proteins. Science (New York, N.Y.). 290: 2306-9. PMID 11125145 DOI: 10.1126/science.290.5500.2306  1
1999 Ren B, Chee KJ, Kim TH, Maniatis T. PRDI-BF1/Blimp-1 repression is mediated by corepressors of the Groucho family of proteins. Genes & Development. 13: 125-37. PMID 9887105 DOI: 10.1101/Gad.13.1.125  1
1998 Ren B, Maniatis T. Regulation of Drosophila Adh promoter switching by an initiator-targeted repression mechanism. The Embo Journal. 17: 1076-86. PMID 9463385 DOI: 10.1093/Emboj/17.4.1076  1
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