Kathleen B Hall - Publications

Biophysics Washington University School of Medicine in St. Louis 

92 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Bernetti M, Hall KB, Bussi G. Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles. Nucleic Acids Research. PMID 34107023 DOI: 10.1093/nar/gkab459  0.01
2021 Cubuk J, Alston JJ, Incicco JJ, Singh S, Stuchell-Brereton MD, Ward MD, Zimmerman MI, Vithani N, Griffith D, Wagoner JA, Bowman GR, Hall KB, Soranno A, Holehouse AS. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA. Nature Communications. 12: 1936. PMID 33782395 DOI: 10.1038/s41467-021-21953-3  0.01
2020 Cubuk J, Alston JJ, Incicco JJ, Singh S, Stuchell-Brereton MD, Ward MD, Zimmerman MI, Vithani N, Griffith D, Wagoner JA, Bowman GR, Hall KB, Soranno A, Holehouse AS. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA. Biorxiv : the Preprint Server For Biology. PMID 32587966 DOI: 10.1101/2020.06.17.158121  0.01
2019 Welty R, Rau M, Pabit S, Dunstan MS, Conn GL, Pollack L, Hall KB. Ribosomal protein L11 selectively stabilizes a tertiary structure of the GTPase Center rRNA domain. Journal of Molecular Biology. PMID 31874150 DOI: 10.2210/Pdb6Prv/Pdb  1
2019 Dyson HJ, Hall KB, Piston DW. Economics and Politics of Publishing in Our Mission-Driven Society. Biophysical Journal. PMID 31054774 DOI: 10.1016/J.Bpj.2019.04.019  0.01
2018 Welty R, Pabit SA, Katz AM, Calvey GD, Pollack L, Hall KB. Divalent ions tune the kinetics of a bacterial GTPase Center rRNA folding transition from secondary to tertiary structure. Rna (New York, N.Y.). PMID 30254137 DOI: 10.1261/Rna.068361.118  1
2018 Weber G, DeKoster GT, Holton N, Hall KB, Wahl MC. Molecular principles underlying dual RNA specificity in the Drosophila SNF protein. Nature Communications. 9: 2220. PMID 29880797 DOI: 10.1038/S41467-018-04561-6  1
2018 Welty R, Hall KB. Different Cations Change the Rates of an RNA Folding Pathway Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1196  1
2017 Hall KB. RNA and Proteins: Mutual Respect. F1000research. 6: 345. PMID 28408981 DOI: 10.12688/F1000Research.10572.1  0.01
2017 Welty R, Hall KB. How Counterion Identity Impacts the Pathway of RNA Tertiary Folding Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1990  1
2016 Hayatshahi HS, Roe DR, Galindo-Murillo R, Hall KB, Cheatham TE. Computational Assessment of Potassium and Magnesium Ion Binding to a Buried Pocket in the GTPase-Associating Center RNA. The Journal of Physical Chemistry. B. PMID 27983843 DOI: 10.1021/Acs.Jpcb.6B08764  1
2016 Welty R, Hall KB. Nucleobases undergo dynamic rearrangements during RNA tertiary folding. Journal of Molecular Biology. PMID 27693721 DOI: 10.1016/J.Jmb.2016.09.015  1
2016 Bergonzo C, Hall KB, Cheatham TE. Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics. Journal of Chemical Theory and Computation. PMID 27294370 DOI: 10.1021/Acs.Jctc.6B00173  1
2016 Welty R, Rau MJ, Hall KB. Kinetic Model of Mg2+ Induced RNA Tertiary Folding from Stopped Flow Fluorescence Data Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2215  1
2015 Bergonzo C, Hall KB, Cheatham TE. Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg(2+) Bound Structure in the Presence of Monovalent Ions. The Journal of Physical Chemistry. B. 119: 12355-64. PMID 26328924 DOI: 10.1021/Acs.Jpcb.5B05190  1
2015 Rau MJ, Welty R, Tom Stump W, Hall KB. Formation of Tertiary Interactions during rRNA GTPase Center Folding. Journal of Molecular Biology. 427: 2799-815. PMID 26210661 DOI: 10.1016/J.Jmb.2015.07.013  1
2015 Rau MJ, Hall KB. 2-Aminopurine Fluorescence as a Probe of Local RNA Structure and Dynamics and Global Folding. Methods in Enzymology. 558: 99-124. PMID 26068739 DOI: 10.1016/Bs.Mie.2015.01.006  1
2015 Hall KB. Mighty tiny. Rna (New York, N.Y.). 21: 630-1. PMID 25780168 DOI: 10.1261/rna.050567.115  1
2015 Melnykov AV, Nayak RK, Hall KB, Van Orden A. Effect of loop composition on the stability and folding kinetics of RNA hairpins with large loops. Biochemistry. 54: 1886-96. PMID 25697574 DOI: 10.1021/Bi5014276  1
2015 Welty R, Rau MJ, Hall KB. Local and Global Folding in a 58mer RNA Revealed by 2-Aminopurine Substitutions and Specific NMR Labels Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.1305  1
2014 DeKoster GT, Delaney KJ, Hall KB. A compare-and-contrast NMR dynamics study of two related RRMs: U1A and SNF. Biophysical Journal. 107: 208-19. PMID 24988355 DOI: 10.1016/J.Bpj.2014.05.026  1
2014 Williams SG, Hall KB. Binding affinity and cooperativity control U2B″/snRNA/U2A' RNP formation. Biochemistry. 53: 3727-37. PMID 24866816 DOI: 10.1021/Bi500438E  1
2014 Williams SG, Hall KB. Linkage and allostery in snRNP protein/RNA complexes. Biochemistry. 53: 3529-39. PMID 24849693 DOI: 10.1021/Bi500192A  1
2014 Delaney KJ, Williams SG, Lawler M, Hall KB. Climbing the vertebrate branch of U1A/U2B″ protein evolution. Rna (New York, N.Y.). 20: 1035-45. PMID 24840944 DOI: 10.1261/Rna.044255.114  1
2014 Hall KB. Molecular biology: Protein binding cannot subdue a lively RNA. Nature. 506: 303-4. PMID 24522527 DOI: 10.1038/Nature13055  1
2014 Gahl S, Cibelli E, Hall K, Sprouse R. The "up" corpus: A corpus of speech samples across adulthood Corpus Linguistics and Linguistic Theory. 10: 315-328. DOI: 10.1515/Cllt-2013-0023  1
2013 Hall KB. RNA does the folding dance of twist, turn, stack. Proceedings of the National Academy of Sciences of the United States of America. 110: 16706-7. PMID 24072647 DOI: 10.1073/Pnas.1316029110  1
2013 Williams SG, Harms MJ, Hall KB. Resurrection of an Urbilaterian U1A/U2B″/SNF protein. Journal of Molecular Biology. 425: 3846-62. PMID 23796518 DOI: 10.1016/J.Jmb.2013.05.031  1
2012 Rau M, Stump WT, Hall KB. Intrinsic flexibility of snRNA hairpin loops facilitates protein binding. Rna (New York, N.Y.). 18: 1984-95. PMID 23012481 DOI: 10.1261/Rna.035006.112  1
2012 Hall KB. Spectroscopic probes of RNA structure and dynamics. Methods in Molecular Biology (Clifton, N.J.). 875: 67-84. PMID 22573436 DOI: 10.1007/978-1-61779-806-1_4  1
2012 Nayak RK, Peersen OB, Hall KB, Van Orden A. Millisecond time-scale folding and unfolding of DNA hairpins using rapid-mixing stopped-flow kinetics. Journal of the American Chemical Society. 134: 2453-6. PMID 22263662 DOI: 10.1021/Ja208490W  1
2012 Hall KB. Effect of protein binding on RNA folding Comprehensive Biophysics. 3: 317-335. DOI: 10.1016/B978-0-12-374920-8.00326-X  1
2011 Williams SG, Hall KB. Human U2B″ protein binding to snRNA stemloops. Biophysical Chemistry. 159: 82-9. PMID 21684671 DOI: 10.1016/J.Bpc.2011.05.010  1
2010 Williams SG, Hall KB. Coevolution of Drosophila snf protein and its snRNA targets. Biochemistry. 49: 4571-82. PMID 20455544 DOI: 10.1021/Bi100374D  1
2010 Liu F, Maynard C, Scott G, Melnykov A, Hall KB, Gruebele M. A natural missing link between activated and downhill protein folding scenarios. Physical Chemistry Chemical Physics : Pccp. 12: 3542-9. PMID 20336253 DOI: 10.1039/B925033F  1
2010 Maynard CM, Hall KB. Interactions between PTB RRMs induce slow motions and increase RNA binding affinity. Journal of Molecular Biology. 397: 260-77. PMID 20080103 DOI: 10.1016/J.Jmb.2009.12.051  1
2009 Hall KB. 2-aminopurine as a probe of RNA conformational transitions. Methods in Enzymology. 469: 269-85. PMID 20946794 DOI: 10.1016/S0076-6879(09)69013-3  1
2009 Melnykov AV, Hall KB. Revival of high-order fluorescence correlation analysis: generalized theory and biochemical applications. The Journal of Physical Chemistry. B. 113: 15629-38. PMID 19877707 DOI: 10.1021/Jp906539K  1
2009 Clerte C, Hall KB. The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48: 2063-74. PMID 19226116 DOI: 10.1021/Bi8016872  1
2008 Hall KB. RNA in motion. Current Opinion in Chemical Biology. 12: 612-8. PMID 18957331 DOI: 10.1016/J.Cbpa.2008.09.033  1
2007 Coppins RL, Hall KB, Groisman EA. The intricate world of riboswitches. Current Opinion in Microbiology. 10: 176-81. PMID 17383225 DOI: 10.1016/J.Mib.2007.03.006  1
2006 Clerte C, Hall KB. Characterization of multimeric complexes formed by the human PTB1 protein on RNA. Rna (New York, N.Y.). 12: 457-75. PMID 16431980 DOI: 10.1261/Rna.2178406  1
2005 Showalter SA, Baker NA, Tang C, Hall KB. Iron responsive element RNA flexibility described by NMR and isotropic reorientational eigenmode dynamics. Journal of Biomolecular Nmr. 32: 179-93. PMID 16132819 DOI: 10.1007/S10858-005-7948-2  1
2005 Showalter SA, Hall KB. Correlated motions in the U1 snRNA stem/loop 2:U1A RBD1 complex. Biophysical Journal. 89: 2046-58. PMID 15951381 DOI: 10.1529/Biophysj.104.058032  1
2005 Showalter SA, Hall KB. Isotropic reorientational eigenmode dynamics complements NMR relaxation measurements for RNA. Methods in Enzymology. 394: 465-80. PMID 15808233 DOI: 10.1016/S0076-6879(05)94019-6  1
2004 Clerte C, Hall KB. Global and local dynamics of the U1A polyadenylation inhibition element (PIE) RNA and PIE RNA-U1A complexes. Biochemistry. 43: 13404-15. PMID 15491147 DOI: 10.1021/Bi049117G  1
2004 Jean JM, Hall KB. Stacking-unstacking dynamics of oligodeoxynucleotide trimers. Biochemistry. 43: 10277-84. PMID 15287755 DOI: 10.1021/Bi049701P  1
2004 Hall KB, Williams DJ. Dynamics of the IRE RNA hairpin loop probed by 2-aminopurine fluorescence and stochastic dynamics simulations. Rna (New York, N.Y.). 10: 34-47. PMID 14681583 DOI: 10.1261/Rna.5133404  1
2004 Showalter SA, Hall KB. Altering the RNA-binding mode of the U1A RBD1 protein. Journal of Molecular Biology. 335: 465-80. PMID 14672656 DOI: 10.1016/J.Jmb.2003.10.055  1
2002 Jean JM, Hall KB. 2-Aminopurine electronic structure and fluorescence properties in DNA. Biochemistry. 41: 13152-61. PMID 12403616 DOI: 10.1021/Bi020308Y  1
2002 Showalter SA, Hall KB. A functional role for correlated motion in the N-terminal RNA-binding domain of human U1A protein. Journal of Molecular Biology. 322: 533-42. PMID 12225747 DOI: 10.1016/S0022-2836(02)00804-5  1
2002 Hall KB. RNA-protein interactions. Current Opinion in Structural Biology. 12: 283-8. PMID 12127445 DOI: 10.1016/S0959-440X(02)00323-8  1
2001 Williams DJ, Boots JL, Hall KB. Thermodynamics of 2'-ribose substitutions in UUCG tetraloops. Rna (New York, N.Y.). 7: 44-53. PMID 11214179 DOI: 10.1017/S1355838201001558  1
2001 Jean JM, Hall KB. 2-Aminopurine fluorescence quenching and lifetimes: Role of base stacking Proceedings of the National Academy of Sciences of the United States of America. 98: 37-41. DOI: 10.1073/Pnas.98.1.37  1
2000 Williams DJ, Hall KB. Monte Carlo applications to thermal and chemical denaturation experiments of nucleic acids and proteins. Methods in Enzymology. 321: 330-52. PMID 10909065 DOI: 10.1016/S0076-6879(00)21201-9  1
2000 Clerte C, Hall KB. Spatial orientation and dynamics of the U1A proteins in the U1A-UTR complex. Biochemistry. 39: 7320-9. PMID 10852733 DOI: 10.1021/Bi000372K  1
2000 Williams DJ, Hall KB. Experimental and computational studies of the G[UUCG]C RNA tetraloop. Journal of Molecular Biology. 297: 1045-61. PMID 10764572 DOI: 10.1006/Jmbi.2000.3623  1
2000 Williams DJ, Hall KB. Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop. Journal of Molecular Biology. 297: 251-65. PMID 10704320 DOI: 10.1006/Jmbi.2000.3547  1
2000 Jean JM, Hall KB. Theoretical Study of the Excited State Properties and Transitions of 2-Aminopurine in the Gas Phase and in Solution Journal of Physical Chemistry A. 104: 1930-1937. DOI: 10.1021/Jp9938258  1
1999 Hall KB, Kranz JK. Nitrocellulose filter binding for determination of dissociation constants. Methods in Molecular Biology (Clifton, N.J.). 118: 105-14. PMID 10549518 DOI: 10.1385/1-59259-676-2:105  1
1999 Jean JM, Clerte C, Hall KB. Global and local dynamics of the human U1A protein determined by tryptophan fluorescence. Protein Science : a Publication of the Protein Society. 8: 2110-20. PMID 10548057 DOI: 10.1110/Ps.8.10.2110  1
1999 Williams DJ, Hall KB. Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model. Biophysical Journal. 76: 3192-205. PMID 10354444 DOI: 10.1016/S0006-3495(99)77471-0  1
1999 Hall KB, Fox RO. Directed cleavage of RNA with protein-tethered EDTA-Fe. Methods (San Diego, Calif.). 18: 78-84. PMID 10208819 DOI: 10.1006/Meth.1999.0759  1
1999 Kranz JK, Hall KB. RNA recognition by the human U1A protein is mediated by a network of local cooperative interactions that create the optimal binding surface. Journal of Molecular Biology. 285: 215-31. PMID 9878401 DOI: 10.1006/Jmbi.1998.2296  1
1998 Hall KB, Tang C. 13C relaxation and dynamics of the purine bases in the iron responsive element RNA hairpin. Biochemistry. 37: 9323-32. PMID 9649313 DOI: 10.1021/Bi9805285  1
1998 Kranz JK, Hall KB. RNA binding mediates the local cooperativity between the beta-sheet and the C-terminal tail of the human U1A RBD1 protein. Journal of Molecular Biology. 275: 465-81. PMID 9466924 DOI: 10.1006/Jmbi.1997.1441  1
1997 Lu J, Hall KB. Tertiary structure of RBD2 and backbone dynamics of RBD1 and RBD2 of the human U1A protein determined by NMR spectroscopy. Biochemistry. 36: 10393-405. PMID 9265619 DOI: 10.1021/Bi9709811  1
1997 Lu J, Hall KB. Thermal unfolding of the N-terminal RNA binding domain of the human U1A protein studied by differential scanning calorimetry. Biophysical Chemistry. 64: 111-9. PMID 9127942 DOI: 10.1016/S0301-4622(96)02212-0  1
1996 Williams DJ, Hall KB. Thermodynamic comparison of the salt dependence of natural RNA hairpins and RNA hairpins with non-nucleotide spacers. Biochemistry. 35: 14665-70. PMID 8931566 DOI: 10.1021/bi961654g  1
1996 Laing LG, Hall KB. A model of the iron responsive element RNA hairpin loop structure determined from NMR and thermodynamic data. Biochemistry. 35: 13586-96. PMID 8885838 DOI: 10.1021/Bi961310Q  1
1996 Kranz JK, Lu J, Hall KB. Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain. Protein Science : a Publication of the Protein Society. 5: 1567-83. PMID 8844847 DOI: 10.1002/Pro.5560050812  1
1996 Williams DJ, Hall KB. RNA hairpins with non-nucleotide spacers bind efficiently to the human U1A protein. Journal of Molecular Biology. 257: 265-75. PMID 8609622 DOI: 10.1006/Jmbi.1996.0161  1
1995 Hall KB. Uses of 13C- and 15N-labeled RNA in NMR of RNA-protein complexes. Methods in Enzymology. 261: 542-59. PMID 8569511 DOI: 10.1016/S0076-6879(95)61024-3  1
1995 Hall KB, Kranz JK. Thermodynamics and mutations in RNA-protein interactions. Methods in Enzymology. 259: 261-81. PMID 8538458 DOI: 10.1016/0076-6879(95)59048-X  1
1995 Cistola DP, Hall KB. Probing internal water molecules in proteins using two-dimensional 19F-1H NMR. Journal of Biomolecular Nmr. 5: 415-9. PMID 7647559 DOI: 10.1007/Bf00182285  1
1995 Lu J, Hall KB. An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA binding domain from the human U1A protein* Journal of Molecular Biology. 247: 739-752. DOI: 10.1016/S0022-2836(05)80152-4  1
1994 Hall KB. Interaction of RNA hairpins with the human U1A N-terminal RNA binding domain. Biochemistry. 33: 10076-88. PMID 7520277 DOI: 10.1021/BI00199A035  1
1993 Stump WT, Hall KB. SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates. Nucleic Acids Research. 21: 5480-4. PMID 7505427 DOI: 10.1093/Nar/21.23.5480  1
1993 Hall KB. NMR spectroscopy of DNA/RNA hybrids Current Opinion in Structural Biology. 3: 336-339. DOI: 10.1016/S0959-440X(05)80103-4  1
1992 Hall KB, McLaughlin LW. Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex. Nucleic Acids Research. 20: 1883-9. PMID 1579489 DOI: 10.1093/Nar/20.8.1883  1
1992 Hall KB, Stump WT. Interaction of N-terminal domain of U1A protein with an RNA stem/loop. Nucleic Acids Research. 20: 4283-90. PMID 1508720 DOI: 10.1093/Nar/20.16.4283  1
1992 Hall KB, Konarska MM. The 5' splice site consensus RNA oligonucleotide induces assembly of U2/U4/U5/U6 small nuclear ribonucleoprotein complexes. Proceedings of the National Academy of Sciences of the United States of America. 89: 10969-73. PMID 1332064 DOI: 10.1073/Pnas.89.22.10969  1
1991 Hall KB, McLaughlin LW. Properties of a U1/mRNA 5' splice site duplex containing pseudouridine as measured by thermodynamic and NMR methods. Biochemistry. 30: 1795-801. PMID 1993194 DOI: 10.1021/Bi00221A010  1
1991 Hall KB, McLaughlin LW. Thermodynamic and structural properties of pentamer DNA.DNA, RNA.RNA, and DNA.RNA duplexes of identical sequence. Biochemistry. 30: 10606-13. PMID 1931983 DOI: 10.1021/Bi00108A002  1
1990 Hall KB, Sampson JR. Structural investigation of the in vitro transcript of the yeast tRNA(phe) precursor by NMR and nuclease mapping. Nucleic Acids Research. 18: 7041-7. PMID 2124675 DOI: 10.1093/Nar/18.23.7041  1
1989 Hall KB, Sampson JR, Uhlenbeck OC, Redfield AG. Structure of an unmodified tRNA molecule. Biochemistry. 28: 5794-801. PMID 2775736 DOI: 10.1021/Bi00440A014  1
1988 Hall KB, Green MR, Redfield AG. Structure of a pre-mRNA branch point/3' splice site region. Proceedings of the National Academy of Sciences of the United States of America. 85: 704-8. PMID 3422452 DOI: 10.1073/Pnas.85.3.704  1
1986 Davis PW, Hall K, Cruz P, Tinoco I, Neilson T. The tetraribonucleotide rCpGpCpG forms a left-handed Z-RNA double-helix Nucleic Acids Research. 14: 1279-1291. PMID 3951987 DOI: 10.1093/Nar/14.3.1279  1
1985 Hall K, Cruz P, Chamberlin MJ. Extensive synthesis of poly[r(G-C)] using Escherichia coli RNA polymerase. Archives of Biochemistry and Biophysics. 236: 47-51. PMID 3881085 DOI: 10.1016/0003-9861(85)90604-6  1
1985 Riazance JH, Baase WA, Johnson WC, Hall K, Cruz P, Tinoco I. Evidence for Z-form RNA by vacuum UV circular dichroism Nucleic Acids Research. 13: 4983-4989. PMID 2410859 DOI: 10.1093/Nar/13.13.4983  1
1984 Hall KB, Maestre MF. Temperature-dependent reversible transition of poly(dCdG).poly(dCdG) in ethanolic and methanolic solutions. Biopolymers. 23: 2127-39. PMID 6498294 DOI: 10.1002/bip.360231103  1
1984 Hall K, Cruz P, Tinoco I, Jovin TM, van de Sande JH. 'Z-RNA'--a left-handed RNA double helix. Nature. 311: 584-6. PMID 6482970 DOI: 10.1038/311584A0  1
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