| Year |
Citation |
Score |
| 2021 |
Kim ET, Dybas JM, Kulej K, Reyes ED, Price AM, Akhtar LN, Orr A, Garcia BA, Boutell C, Weitzman MD. Comparative proteomics identifies Schlafen 5 (SLFN5) as a herpes simplex virus restriction factor that suppresses viral transcription. Nature Microbiology. PMID 33432153 DOI: 10.1038/s41564-020-00826-3 |
0.44 |
|
| 2021 |
Melo-Braga MN, Ibáñez-Vea M, Kulej K, Larsen MR. Comprehensive Protocol to Simultaneously Study Protein Phosphorylation, Acetylation, and N-Linked Sialylated Glycosylation. Methods in Molecular Biology (Clifton, N.J.). 2261: 55-72. PMID 33420984 DOI: 10.1007/978-1-0716-1186-9_5 |
0.487 |
|
| 2020 |
Aguilan JT, Kulej K, Sidoli S. Guide for protein fold change and -value calculation for non-experts in proteomics. Molecular Omics. PMID 32968743 DOI: 10.1039/d0mo00087f |
0.516 |
|
| 2020 |
Genoyer E, Kulej K, Hung CT, Thibault PA, Azarm K, Takimoto T, Garcia BA, Lee B, Lakdawala S, Weitzman MD, López CB. The Viral Polymerase Complex Mediates the Interaction of Viral Ribonucleoprotein Complexes with Recycling Endosomes during Sendai Virus Assembly. Mbio. 11. PMID 32843550 DOI: 10.1128/Mbio.02028-20 |
0.432 |
|
| 2020 |
Bhagwat AR, Le Sage V, Nturibi E, Kulej K, Jones J, Guo M, Tae Kim E, Garcia BA, Weitzman MD, Shroff H, Lakdawala SS. Quantitative live cell imaging reveals influenza virus manipulation of Rab11A transport through reduced dynein association. Nature Communications. 11: 23. PMID 31911620 DOI: 10.1038/S41467-019-13838-3 |
0.38 |
|
| 2019 |
Sidoli S, Lopes M, Lund PJ, Goldman N, Fasolino M, Coradin M, Kulej K, Bhanu NV, Vahedi G, Garcia BA. A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins. Scientific Reports. 9: 13613. PMID 31541121 DOI: 10.1038/S41598-019-49894-4 |
0.737 |
|
| 2019 |
Sidoli S, Kori Y, Lopes M, Yuan ZF, Kim HJ, Kulej K, Janssen KA, Agosto LM, Cunha JPC, Andrews AJ, Garcia BA. One minute analysis of 200 histone post-translational modifications by direct injection mass spectrometry. Genome Research. PMID 31123082 DOI: 10.1101/Gr.247353.118 |
0.694 |
|
| 2019 |
Lu C, Sidoli S, Kulej K, Ross K, Wu CH, Garcia BA. Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition. Epigenetics & Chromatin. 12: 11. PMID 30736855 DOI: 10.1186/S13072-019-0256-Y |
0.715 |
|
| 2018 |
Sadeghi RS, Kulej K, Kathayat RS, Garcia BA, Dickinson BC, Brady DC, Witze E. Wnt5a signaling induced phosphorylation increases APT1 activity and promotes melanoma metastatic behavior. Elife. 7. PMID 29648538 DOI: 10.7554/Elife.34362 |
0.413 |
|
| 2017 |
Reyes ED, Kulej K, Pancholi NJ, Akhtar LN, Avgousti DC, Kim ET, Bricker DK, Spruce LA, Koniski SA, Seeholzer SH, Isaacs SN, Garcia BA, Weitzman MD. Identifying host factors associated with DNA replicated during virus infection. Molecular & Cellular Proteomics : McP. PMID 28972080 DOI: 10.1074/Mcp.M117.067116 |
0.411 |
|
| 2017 |
Shinde MY, Sidoli S, Kulej K, Mallory MJ, Radens CM, Reicherter A, Myers RL, Barash Y, Lynch KW, Garcia BA, Klein PS. Phosphoproteomics reveals that glycogen synthase kinase-3 phosphorylates multiple splicing factors and is associated with alternative splicing. The Journal of Biological Chemistry. PMID 28916722 DOI: 10.1074/Jbc.M117.813527 |
0.646 |
|
| 2017 |
Wang R, Cao XJ, Kulej K, Liu W, Ma T, MacDonald M, Chiang CM, Garcia BA, You J. Uncovering BRD4 hyperphosphorylation associated with cellular transformation in NUT midline carcinoma. Proceedings of the National Academy of Sciences of the United States of America. PMID 28630312 DOI: 10.1073/pnas.1703071114 |
0.723 |
|
| 2017 |
Kulej K, Avgousti DC, Sidoli S, Herrmann C, Della Fera AN, Kim ET, Garcia BA, Weitzman MD. Time-resolved global and chromatin proteomics during herpes simplex virus (HSV-1) infection. Molecular & Cellular Proteomics : McP. PMID 28179408 DOI: 10.1074/Mcp.M116.065987 |
0.665 |
|
| 2016 |
Sidoli S, Kulej K, Garcia BA. Why proteomics is not the new genomics and the future of mass spectrometry in cell biology. The Journal of Cell Biology. PMID 27956468 DOI: 10.1083/Jcb.201612010 |
0.676 |
|
| 2016 |
Avgousti DC, Herrmann C, Kulej K, Pancholi NJ, Sekulic N, Petrescu J, Molden RC, Blumenthal D, Paris AJ, Reyes ED, Ostapchuk P, Hearing P, Seeholzer SH, Worthen GS, Black BE, et al. A core viral protein binds host nucleosomes to sequester immune danger signals. Nature. PMID 27362237 DOI: 10.1038/nature18317 |
0.743 |
|
| 2016 |
Sidoli S, Fujiwara R, Kulej K, Garcia BA. Differential quantification of isobaric phosphopeptides using data-independent acquisition mass spectrometry. Molecular Biosystems. PMID 27301801 DOI: 10.1039/C6Mb00385K |
0.689 |
|
| 2015 |
Sidoli S, Simithy J, Karch KR, Kulej K, Garcia BA. Low Resolution Data-Independent Acquisition in an LTQ-Orbitrap Allows for Simplified and Fully Untargeted Analysis of Histone Modifications. Analytical Chemistry. 87: 11448-54. PMID 26505526 DOI: 10.1021/Acs.Analchem.5B03009 |
0.713 |
|
| 2015 |
Kulej K, Avgousti DC, Weitzman MD, Garcia BA. Characterization of histone post-translational modifications during virus infection using mass spectrometry-based proteomics. Methods (San Diego, Calif.). PMID 26093074 DOI: 10.1016/j.ymeth.2015.06.008 |
0.613 |
|
| 2015 |
Kulej K, Sidoli S, Palmisano G, Edwards AVG, Robinson PJ, Larsen MR. Optimization of calmodulin-affinity chromatography for brain and organelles Eupa Open Proteomics. DOI: 10.1016/J.Euprot.2015.05.004 |
0.545 |
|
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