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Ya Yang - Publications

Affiliations: 
University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Plant systematics and evolution
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pucker B, Walker-Hale N, Dzurlic J, Yim WC, Cushman JC, Crum A, Yang Y, Brockington SF. Multiple mechanisms explain loss of anthocyanins from betalain-pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme. The New Phytologist. PMID 37897060 DOI: 10.1111/nph.19341  0.686
2023 Mohn RA, Zenil-Ferguson R, Krueger TA, Fleischmann AS, Cross AT, Yang Y. Dramatic difference in rate of chromosome number evolution among sundew (Drosera L., Droseraceae) lineages. Evolution; International Journal of Organic Evolution. PMID 37638607 DOI: 10.1093/evolut/qpad153  0.708
2022 Morales-Briones DF, Lin N, Huang EY, Grossenbacher DL, Sobel JM, Gilmore CD, Tank DC, Yang Y. Phylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades. American Journal of Botany. PMID 35462411 DOI: 10.1002/ajb2.1860  0.792
2022 Tefarikis DT, Morales-Briones DF, Yang Y, Edwards G, Kadereit G. On the hybrid origin of the C Salsola divaricata agg. (Amaranthaceae) from C and C parental lineages. The New Phytologist. PMID 35288945 DOI: 10.1111/nph.18098  0.724
2021 Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC, Yang Y. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology. PMID 33978764 DOI: 10.1093/sysbio/syab032  0.786
2020 Morales-Briones DF, Kadereit G, Tefarikis DT, Moore MJ, Smith SA, Brockington SF, Timoneda A, Yim WC, Cushman JC, Yang Y. Disentangling Sources of Gene Tree Discordance in Phylogenomic Datasets: Testing Ancient Hybridizations in Amaranthaceae s.l. Systematic Biology. PMID 32785686 DOI: 10.1093/Sysbio/Syaa066  0.798
2019 Qiu Y, Hirsch CD, Yang Y, Watkins E. Towards Improved Molecular Identification Tools in Fine Fescue ( L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome Sequencing. Frontiers in Genetics. 10: 1223. PMID 31867041 DOI: 10.3389/Fgene.2019.01223  0.404
2019 Feng T, Yang Y, Busta L, Cahoon EB, Wang H, Lu S. FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids. Plant Physiology. PMID 31420445 DOI: 10.1104/Pp.19.00800  0.415
2018 Wang N, Yang Y, Moore MJ, Brockington SF, Walker JF, Brown JW, Liang B, Feng T, Edwards C, Mikenas J, Olivieri J, Hutchison V, Timoneda A, Stoughton T, Puente R, et al. Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments. Molecular Biology and Evolution. PMID 30371871 DOI: 10.1093/Molbev/Msy200  0.793
2018 Yang Y, Morden CW, Sporck-Koehler MJ, Sack L, Wagner WL, Berry PE. Repeated range expansion and niche shift in a volcanic hotspot archipelago: Radiation of C Hawaiian subgenus (Euphorbiaceae). Ecology and Evolution. 8: 8523-8536. PMID 30250720 DOI: 10.1002/Ece3.4354  0.647
2018 Walker JF, Yang Y, Feng T, Timoneda A, Mikenas J, Hutchison V, Edwards C, Wang N, Ahluwalia S, Olivieri J, Walker-Hale N, Majure LC, Puente R, Kadereit G, Lauterbach M, et al. From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales. American Journal of Botany. PMID 29738076 DOI: 10.1002/Ajb2.1069  0.735
2018 McKain MR, Johnson MG, Uribe-Convers S, Eaton D, Yang Y. Practical considerations for plant phylogenomics. Applications in Plant Sciences. 6: e1038. PMID 29732268 DOI: 10.1002/Aps3.1038  0.764
2018 Gitzendanner MA, Yang Y, Wickett NJ, McKain M, Beaulieu JM. Methods for exploring the plant tree of life Applications in Plant Sciences. 6: e1039. DOI: 10.1002/Aps3.1039  0.304
2017 Lopez-Nieves S, Yang Y, Timoneda A, Wang M, Feng T, Smith SA, Brockington SF, Maeda HA. Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales. The New Phytologist. PMID 28990194 DOI: 10.1111/Nph.14822  0.537
2017 Yang Y, Moore MJ, Brockington SF, Mikenas J, Olivieri J, Walker JF, Smith SA. Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events. The New Phytologist. PMID 28944472 DOI: 10.1111/Nph.14812  0.731
2017 Smith SA, Brown JW, Yang Y, Bruenn R, Drummond CP, Brockington SF, Walker JF, Last N, Douglas NA, Moore MJ. Disparity, diversity, and duplications in the Caryophyllales. The New Phytologist. PMID 28892163 DOI: 10.1111/Nph.14772  0.779
2017 Walker JF, Yang Y, Moore MJ, Mikenas J, Timoneda A, Brockington SF, Smith SA. Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales. American Journal of Botany. PMID 28634254 DOI: 10.3732/Ajb.1700083  0.74
2017 Yang Y, Moore MJ, Brockington SF, Timoneda A, Feng T, Marx HE, Walker JF, Smith SA. An efficient field and laboratory workflow for plant phylotranscriptomic projects. Applications in Plant Sciences. 5. PMID 28337391 DOI: 10.3732/Apps.1600128  0.671
2015 Smith SA, Moore MJ, Brown JW, Yang Y. Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants. Bmc Evolutionary Biology. 15: 150. PMID 26239519 DOI: 10.1186/S12862-015-0423-0  0.698
2015 Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA. Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales. The New Phytologist. PMID 25966996 DOI: 10.1111/Nph.13441  0.595
2015 Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Molecular Biology and Evolution. 32: 2001-14. PMID 25837578 DOI: 10.1093/Molbev/Msv081  0.647
2015 Smith SA, Moore MJ, Brown JW, Yang Y. Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants Bmc Evolutionary Biology. 15. DOI: 10.1186/s12862-015-0423-0  0.651
2014 Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ. Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution; International Journal of Organic Evolution. 68: 3485-504. PMID 25302554 DOI: 10.1111/Evo.12534  0.621
2014 Yang Y, Smith SA. Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics. Molecular Biology and Evolution. 31: 3081-92. PMID 25158799 DOI: 10.1093/Molbev/Msu245  0.575
2014 Yang X, Yang Y, Ji C, Feng T, Shi Y, Lin L, Ma J, He J. Large-scale patterns of stomatal traits in Tibetan and Mongolian grassland species Basic and Applied Ecology. 15: 122-132. DOI: 10.1016/J.Baae.2014.01.003  0.315
2013 Yang Y, Smith SA. Optimizing de novo assembly of short-read RNA-seq data for phylogenomics. Bmc Genomics. 14: 328. PMID 23672450 DOI: 10.1186/1471-2164-14-328  0.486
2012 Yang Y, Riina R, Morawetz JJ, Haevermans T, Aubriot X, Berry PE. Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae) Taxon. 61: 764-789. DOI: 10.1002/Tax.614005  0.56
2011 Yang Y, Berry PE. Phylogenetics of the Chamaesyce clade (Euphorbia, Euphorbiaceae): reticulate evolution and long-distance dispersal in a prominent C4 lineage. American Journal of Botany. 98: 1486-503. PMID 21875975 DOI: 10.3732/Ajb.1000496  0.619
2011 Berry PE, Steinmann VW, Yang Y. 2011) Proposal to conserve the name Euphorbia acuta Engelm. Against E. Acuta Bellardi ex Colla (Euphorbiaceae) Taxon. 60: 603-604. DOI: 10.1002/Tax.602042  0.533
2007 Hendry TA, Bin W, Yang Y, Davis EC, Braggins JE, Schuster RM, Qiu YL. Evaluating phylogenetic positions of four liverworts from New Zealand, Neogrollea notabilis, Jackiella curvata, Goebelobryum unguiculatum and Herzogianthus vaginatus, using three chloroplast genes Bryologist. 110: 738-751. DOI: 10.1639/0007-2745(2007)110[738:Eppofl]2.0.Co;2  0.412
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