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Carl Frieden - Related publications

Affiliations: 
Biochemistry and Molecular Biophysics Washington University, Saint Louis, St. Louis, MO 
Area:
protein folding, protein structure/function relationships, protein-protein interactions and the mechanisms of enzymatic reactions
Website:
http://bmbweb.wustl.edu/faculty/faculty/carl-frieden
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Mir S, Ashraf S, Saeed M, Rahman AU, Ul-Haq Z. Protonation states at different pH, conformational changes and impact of glycosylation in synapsin Ia. Physical Chemistry Chemical Physics : Pccp. PMID 34318818 DOI: 10.1039/d1cp00531f   
2021 Song KC, Molina AV, Chen R, Gagnon IA, Koh YH, Roux B, Sosnick TR. Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34413192 DOI: 10.1073/pnas.2103674118   
2021 Ali MS, Rehman MT, Al-Lohedan HA, AlAjmi MF. Exploration of the binding between cuminol and bovine serum albumin through spectroscopic, molecular docking and molecular dynamics methods. Journal of Biomolecular Structure & Dynamics. 1-9. PMID 34488560 DOI: 10.1080/07391102.2021.1971560   
2021 Toyama Y, Harkness RW, Kay LE. Dissecting the role of interprotomer cooperativity in the activation of oligomeric high-temperature requirement A2 protein. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34446566 DOI: 10.1073/pnas.2111257118   
2021 Wang W, Liu Q, Liu Q, Hendrickson WA. Conformational equilibria in allosteric control of Hsp70 chaperones. Molecular Cell. PMID 34453889 DOI: 10.1016/j.molcel.2021.07.039   
2021 Shmool TA, Martin LK, Bui-Le L, Moya-Ramirez I, Kotidis P, Matthews RP, Venter GA, Kontoravdi C, Polizzi KM, Hallett JP. An experimental approach probing the conformational transitions and energy landscape of antibodies: a glimmer of hope for reviving lost therapeutic candidates using ionic liquid. Chemical Science. 12: 9528-9545. PMID 34349928 DOI: 10.1039/d1sc02520a   
2021 Sobti M, Ueno H, Noji H, Stewart AG. The six steps of the complete F-ATPase rotary catalytic cycle. Nature Communications. 12: 4690. PMID 34344897 DOI: 10.1038/s41467-021-25029-0   
2021 Dass R, Corlianò E, Mulder FAA. The contribution of electrostatics to hydrogen exchange in the unfolded protein state. Biophysical Journal. PMID 34370996 DOI: 10.1016/j.bpj.2021.08.003   
2021 Li J, Hou C, Ma X, Guo S, Zhang H, Shi L, Liao C, Zheng B, Ye L, Yang L, He X. Entropy-Enthalpy Compensations Fold Proteins in Precise Ways. International Journal of Molecular Sciences. 22. PMID 34502559 DOI: 10.3390/ijms22179653   
2021 Xu J, Namanja A, Chan SL, Son C, Petros AM, Sun C, Radziejewski C, Ihnat PM. Insights into the conformation and self-association of a concentrated monoclonal antibody using isothermal chemical denaturation and nuclear magnetic resonance. Journal of Pharmaceutical Sciences. PMID 34506864 DOI: 10.1016/j.xphs.2021.09.005   
2021 Shen R, Crean RM, Johnson SJ, Kamerlin SCL, Hengge AC. Single Residue on the WPD-Loop Affects the pH Dependency of Catalysis in Protein Tyrosine Phosphatases. Jacs Au. 1: 646-659. PMID 34308419 DOI: 10.1021/jacsau.1c00054   
2021 Rösner HI, Caldarini M, Potel G, Malmodin D, Vanoni MA, Aliverti A, Broglia RA, Kragelund BB, Tiana G. The denatured state of HIV-1 protease under native conditions. Proteins. PMID 34312913 DOI: 10.1002/prot.26189   
2021 T RR, Saharay M, Smith JC, Krishnan M. Correlated Response of Protein Side-Chain Fluctuations and Conformational Entropy to Ligand Binding. The Journal of Physical Chemistry. B. PMID 34423989 DOI: 10.1021/acs.jpcb.1c01227   
2021 Cresti JR, Manfredonia AJ, Bragança CE, Boscia JA, Hurley CM, Cundiff MD, Kraut DA. Proteasomal conformation controls unfolding ability. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34161281 DOI: 10.1073/pnas.2101004118   
2021 Cresti JR, Manfredonia AJ, Bragança CE, Boscia JA, Hurley CM, Cundiff MD, Kraut DA. Proteasomal conformation controls unfolding ability. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34161281 DOI: 10.1073/pnas.2101004118   
2021 Mayerthaler F, Feldberg AL, Alfermann J, Sun X, Steinchen W, Yang H, Mootz HD. Intermediary conformations linked to the directionality of the aminoacylation pathway of nonribosomal peptide synthetases. Rsc Chemical Biology. 2: 843-854. PMID 34458813 DOI: 10.1039/d0cb00220h   
2021 Dubrow A, Kim I, Topo E, Cho JH. Understanding the Binding Transition State After the Conformational Selection Step: The Second Half of the Molecular Recognition Process Between NS1 of the 1918 Influenza Virus and Host p85β. Frontiers in Molecular Biosciences. 8: 716477. PMID 34307465 DOI: 10.3389/fmolb.2021.716477   
2021 Dubrow A, Kim I, Topo E, Cho JH. Understanding the Binding Transition State After the Conformational Selection Step: The Second Half of the Molecular Recognition Process Between NS1 of the 1918 Influenza Virus and Host p85β. Frontiers in Molecular Biosciences. 8: 716477. PMID 34307465 DOI: 10.3389/fmolb.2021.716477   
2021 Ikoma M, Nakasone Y, Terazima M. Photoreaction of photoactivated adenylate cyclase from cyanobacterium Microcoleus chthonoplastes. Journal of Photochemistry and Photobiology. B, Biology. 221: 112252. PMID 34265548 DOI: 10.1016/j.jphotobiol.2021.112252   
2021 Voith von Voithenberg L, Barth A, Trauschke V, Demarco B, Tyagi S, Koehler C, Lemke EA, Lamb DC. Comparative analysis of the coordinated motion of Hsp70s from different organelles observed by single-molecule three-color FRET. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34389669 DOI: 10.1073/pnas.2025578118   
2021 Bie LH, Fei JW, Gao J. Molecular mechanism of methyl-dependent and spatial-specific DNA recognition of c-Jun homodimer. Journal of Molecular Modeling. 27: 227. PMID 34264385 DOI: 10.1007/s00894-021-04840-y   
2021 Boucher L, Somani S, Negron C, Ma W, Jacobs S, Chan W, Malia T, Obmolova G, Teplyakov A, Gilliland GL, Luo J. Surface Salt bridges Contribute to the Extreme Thermal Stability of an FN3-like domain from a thermophilic bacterium. Proteins. PMID 34405904 DOI: 10.1002/prot.26218   
2021 Halder P, Mitra P. Human prion protein: exploring the thermodynamic stability and structural dynamics of its pathogenic mutants. Journal of Biomolecular Structure & Dynamics. 1-17. PMID 34338141 DOI: 10.1080/07391102.2021.1957715   
2021 Dreydoppel M, Dorn B, Modig K, Akke M, Weininger U. Transition-State Compressibility and Activation Volume of Transient Protein Conformational Fluctuations. Jacs Au. 1: 833-842. PMID 34467336 DOI: 10.1021/jacsau.1c00062   
2021 Goswami S, Manna B, Chattopadhyay K, Ghosh A, Datta S. Role of Conformational Change and Glucose Binding Sites in the Enhanced Glucose Tolerance of GH1 β-Glucosidase Mutants. The Journal of Physical Chemistry. B. PMID 34384214 DOI: 10.1021/acs.jpcb.1c02150   
2021 Ye X, Mayne L, Englander SW. A conserved strategy for structure change and energy transduction in Hsp104 and other AAA+ protein motors. The Journal of Biological Chemistry. 101066. PMID 34384781 DOI: 10.1016/j.jbc.2021.101066   
2021 Dean DN, Lee JC. Purification and characterization of an amyloidogenic repeat domain from the functional amyloid Pmel17. Protein Expression and Purification. 105944. PMID 34293440 DOI: 10.1016/j.pep.2021.105944   
2021 Van Deuren V, Yang YS, de Guillen K, Dubois C, Royer CA, Roumestand C, Barthe P. Comparative Assessment of NMR Probes for the Experimental Description of Protein Folding Pathways with High-Pressure NMR. Biology. 10. PMID 34356511 DOI: 10.3390/biology10070656   
2021 Williams AN, Sherman MB, Smith HQ, Taube S, Pettitt BM, Wobus CE, Smith TJ. Multiple signals in the gut contract the mouse norovirus capsid to block antibody binding while enhancing receptor affinity. Journal of Virology. JVI0147121. PMID 34468172 DOI: 10.1128/JVI.01471-21   
2021 Santhouse JR, Rao SR, Horne WS. Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics. Methods in Enzymology. 656: 93-122. PMID 34325801 DOI: 10.1016/bs.mie.2021.04.009   
2021 Aguirre-Cardenas MI, Geddes-Buehre DH, Crowhurst KA. Removal of disulfide from acid stress chaperone HdeA does not wholly eliminate structure or function at low pH. Biochemistry and Biophysics Reports. 27: 101064. PMID 34307907 DOI: 10.1016/j.bbrep.2021.101064   
2021 Ortega-Alarcon D, Claveria-Gimeno R, Vega S, Jorge-Torres OC, Esteller M, Abian O, Velazquez-Campoy A. Stabilization Effect of Intrinsically Disordered Regions on Multidomain Proteins: The Case of the Methyl-CpG Protein 2, MeCP2. Biomolecules. 11. PMID 34439881 DOI: 10.3390/biom11081216   
2021 Yeggoni DP, Dubey S, Mohammad YZ, Rachamallu A, Subramanyam R. Elucidation of binding mechanism of stigmasterol with human serum albumin: a biophysical and molecular dynamics simulation approach. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 34463217 DOI: 10.1080/07391102.2021.1968498   
2021 Rumfeldt J, Kurttila M, Takala H, Ihalainen JA. The hairpin extension controls solvent access to the chromophore binding pocket in a bacterial phytochrome: a UV-vis absorption spectroscopy study. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 20: 1173-1181. PMID 34460093 DOI: 10.1007/s43630-021-00090-2   
2021 Abdollahi K, Condict L, Hung A, Kasapis S. Binding parameters and molecular dynamics of β-lactoglobulin-vanillic acid complexation as a function of pH - part B: Neutral pH. Food Chemistry. 367: 130655. PMID 34371277 DOI: 10.1016/j.foodchem.2021.130655   
2021 Agrawal S, Govind Kumar V, Gundampati RK, Moradi M, Kumar TKS. Characterization of the structural forces governing the reversibility of the thermal unfolding of the human acidic fibroblast growth factor. Scientific Reports. 11: 15579. PMID 34341408 DOI: 10.1038/s41598-021-95050-2   
2021 Walker B, Jing Z, Ren P. Molecular dynamics free energy simulations of ATP:Mg and ADP:Mg using the polarizable force field AMOEBA. Molecular Simulation. 47: 439-448. PMID 34421214 DOI: 10.1080/08927022.2020.1725003   
2021 Dash R, Mitra S, Munni YA, Choi HJ, Ali MC, Barua L, Jang TJ, Moon IS. Computational Insights into the Deleterious Impacts of Missense Variants on -Acetyl-d-glucosamine Kinase Structure and Function. International Journal of Molecular Sciences. 22. PMID 34360815 DOI: 10.3390/ijms22158048   
2021 Li J, Ding Y, Liu H, He H, Yu D, Wang X, Wang X, Yu X, Ge B, Huang F. Oligomerization-Enhanced Receptor-Ligand Binding Revealed by Dual-Color Simultaneous Tracking on Living Cell Membranes. The Journal of Physical Chemistry Letters. 8164-8169. PMID 34410720 DOI: 10.1021/acs.jpclett.1c01844   
2021 Medeiros Almeida V, Chaudhuri A, Cangussu Cardoso MV, Matsuyama BY, Monteiro Ferreira G, Goulart Trossini GH, Salinas RK, Loria JP, Marana SR. Role of a high centrality residue in protein dynamics and thermal stability. Journal of Structural Biology. 213: 107773. PMID 34320379 DOI: 10.1016/j.jsb.2021.107773   
2021 Papp D, Szigyártó IC, Nordén B, Perczel A, Beke-Somfai T. Structural Water Stabilizes Protein Motifs in Liquid Protein Phase: The Folding Mechanism of Short β-Sheets Coupled to Phase Transition. International Journal of Molecular Sciences. 22. PMID 34445303 DOI: 10.3390/ijms22168595   
2021 Kumar A, Chakraborty D, Mugnai ML, Straub JE, Thirumalai D. Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants. The Journal of Physical Chemistry Letters. 9026-9032. PMID 34516126 DOI: 10.1021/acs.jpclett.1c02310   
2021 Braun L, Schoen I, Vogel V. PIP-induced membrane binding of the Vinculin tail competes with its other binding partners. Biophysical Journal. PMID 34411575 DOI: 10.1016/j.bpj.2021.08.018   
2021 Peterson TA, Piper RC. Deconvolution of Multiple Rab Binding Domains Using the Batch Yeast 2-Hybrid Method DEEPN. Methods in Molecular Biology (Clifton, N.J.). 2293: 117-141. PMID 34453714 DOI: 10.1007/978-1-0716-1346-7_9   
2021 Olgenblum GI, Wien F, Sapir L, Harries D. β-Hairpin Miniprotein Stabilization in Trehalose Glass Is Facilitated by an Emergent Compact Non-Native State. The Journal of Physical Chemistry Letters. 7659-7664. PMID 34351767 DOI: 10.1021/acs.jpclett.1c02379   
2021 Morgan JL, Yeager A, Estelle AB, Gsponer J, Barbar E. Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners. Journal of Molecular Biology. 433: 167152. PMID 34273400 DOI: 10.1016/j.jmb.2021.167152   
2021 Morgan JL, Yeager A, Estelle AB, Gsponer J, Barbar E. Transient Tertiary Structures of Disordered Dynein Intermediate Chain Regulate its Interactions with Multiple Partners. Journal of Molecular Biology. 433: 167152. PMID 34273400 DOI: 10.1016/j.jmb.2021.167152   
2021 Gupta C, Khaniya U, Vant JW, Shekhar M, Mao J, Gunner MR, Singharoy A. Poor Person's pH Simulation of Membrane Proteins. Methods in Molecular Biology (Clifton, N.J.). 2315: 197-217. PMID 34302678 DOI: 10.1007/978-1-0716-1468-6_12   
2021 Gupta C, Khaniya U, Vant JW, Shekhar M, Mao J, Gunner MR, Singharoy A. Poor Person's pH Simulation of Membrane Proteins. Methods in Molecular Biology (Clifton, N.J.). 2315: 197-217. PMID 34302678 DOI: 10.1007/978-1-0716-1468-6_12   
2021 Rout J, Swain BC, Subadini S, Mishra PP, Sahoo H, Tripathy U. Spectroscopic and computational insight into the conformational dynamics of hemoglobin in the presence of vitamin B12. International Journal of Biological Macromolecules. PMID 34419543 DOI: 10.1016/j.ijbiomac.2021.08.096