cached image

J. Clark Lagarias - Publications

Affiliations: 
Molecular and Cellular Biology University of California, Davis, Davis, CA 
Area:
photoreceptor phytochrome
Website:
http://biosci3.ucdavis.edu/facultyandresearch/FacultyProfile.aspx?FacultyID=286

147 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Rockwell NC, Moreno MV, Martin SS, Lagarias JC. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 21: 471-491. PMID 35411484 DOI: 10.1007/s43630-022-00213-3  0.831
2021 Blain-Hartung M, Rockwell NC, Lagarias JC. Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases. Plant Physiology. 187: 632-645. PMID 34608946 DOI: 10.1093/PLPHYS/KIAB240  0.813
2021 Zhang W, Willows RD, Deng R, Li Z, Li M, Wang Y, Guo Y, Shi W, Fan Q, Martin SS, Rockwell NC, Lagarias JC, Duanmu D. Bilin-dependent regulation of chlorophyll biosynthesis by GUN4. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33975960 DOI: 10.1073/pnas.2104443118  0.802
2021 Bandara S, Rockwell NC, Zeng X, Ren Z, Wang C, Shin H, Martin SS, Moreno MV, Lagarias JC, Yang X. Crystal structure of a far-red-sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33727422 DOI: 10.1073/pnas.2025094118  0.835
2021 Kirpich JS, Chang CW, Franse J, Yu Q, Escobar FV, Jenkins AJ, Martin SS, Narikawa R, Ames JB, Lagarias JC, Larsen DS. Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences. Biochemistry. PMID 33439010 DOI: 10.1021/acs.biochem.0c00796  0.811
2020 Moreno MV, Rockwell NC, Mora M, Fisher AJ, Lagarias JC. A far-red cyanobacteriochrome lineage specific for verdins. Proceedings of the National Academy of Sciences of the United States of America. PMID 33106421 DOI: 10.1073/pnas.2016047117  0.813
2020 Jenkins AJ, Gottlieb SM, Chang CW, Kim PW, Hayer RJ, Hanke SJ, Martin SS, Lagarias JC, Larsen DS. Conservation and Diversity in the Primary Reverse Photodynamics of the Canonical Red/Green Cyanobacteriochrome Family. Biochemistry. PMID 33021375 DOI: 10.1021/acs.biochem.0c00454  0.593
2020 Fushimi K, Hasegawa M, Ito T, Rockwell NC, Enomoto G, -Win NN, Lagarias JC, Ikeuchi M, Narikawa R. Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571944 DOI: 10.1073/Pnas.2004273117  0.831
2020 Hu W, Figueroa-Balderas R, Chi-Ham C, Lagarias JC. Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B. Plant Direct. 4: e00210. PMID 32346668 DOI: 10.1002/pld3.210  0.359
2020 Song JY, Lee HY, Yang HW, Song JJ, Lagarias JC, Park YI. Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes. The Journal of Biological Chemistry. PMID 32184354 DOI: 10.1074/Jbc.Ra120.012950  0.721
2019 Rockwell NC, Lagarias JC. Phytochrome Evolution in 3D: Deletion, Duplication, and Diversification. The New Phytologist. PMID 31595505 DOI: 10.1111/Nph.16240  0.639
2019 Jenkins AJ, Gottlieb SM, Chang CW, Hayer RJ, Martin SS, Lagarias JC, Larsen DS. Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. PMID 31528964 DOI: 10.1039/C9Pp00295B  0.682
2019 Hu W, Lagarias JC. LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants. The Plant Cell. PMID 31085578 DOI: 10.1105/Tpc.19.00373  0.419
2019 Kirpich J, Gottlieb SM, Chang CW, Kim PW, Martin SS, Lagarias JC, Larsen DS. Reverse Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme. Biochemistry. PMID 30977638 DOI: 10.1021/acs.biochem.8b01275  0.569
2019 Kirpich J, Gottlieb SM, Chang CW, Martin SS, Lagarias JC, Larsen DS, Kim PW. Forward Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme. Biochemistry. PMID 30973006 DOI: 10.1021/Acs.Biochem.8B01274  0.678
2018 Yang Y, Lam V, Adomako M, Simkovsky R, Jakob A, Rockwell NC, Cohen SE, Taton A, Wang J, Lagarias JC, Wilde A, Nobles DR, Brand JJ, Golden SS. Phototaxis in a wild isolate of the cyanobacterium . Proceedings of the National Academy of Sciences of the United States of America. PMID 30552139 DOI: 10.1073/Pnas.1812871115  0.706
2018 Blain-Hartung M, Rockwell NC, Moreno MV, Martin SS, Gan F, Bryant DA, Lagarias JC. Correction: Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells. The Journal of Biological Chemistry. 293: 13850. PMID 30194257 DOI: 10.1074/jbc.AAC118.005397  0.789
2018 Kirpich J, Mix LT, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1. The Journal of Physical Chemistry Letters. PMID 29874080 DOI: 10.1021/Acs.Jpclett.8B01133  0.75
2018 Kirpich J, Chang CW, Madsen D, Gottlieb SM, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Non-Canonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme. Biochemistry. PMID 29633829 DOI: 10.1021/Acs.Biochem.7B01252  0.766
2018 Lim S, Yu Q, Gottlieb SM, Chang CW, Rockwell NC, Martin SS, Madsen D, Lagarias JC, Larsen DS, Ames JB. Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4. Proceedings of the National Academy of Sciences of the United States of America. 115: 4387-4392. PMID 29632180 DOI: 10.1073/Pnas.1720682115  0.808
2018 Blain-Hartung M, Rockwell NC, Moreno MV, Martin SS, Gan F, Bryant DA, Lagarias JC. Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells. The Journal of Biological Chemistry. PMID 29632072 DOI: 10.1074/Jbc.Ra118.002258  0.812
2017 Wittkopp TM, Schmollinger S, Saroussi SI, Hu W, Zhang W, Fan Q, Gallaher SD, Leonard MT, Soubeyrand E, Basset G, Merchant SS, Grossman AR, Duanmu D, Lagarias JC. Bilin-dependent photoacclimation in Chlamydomonas reinhardtii. The Plant Cell. PMID 29084873 DOI: 10.1105/Tpc.17.00149  0.83
2017 Blain-Hartung MD, Rockwell NC, Lagarias JC. Light-regulated synthesis of cyclic-di-GMP by a bidomain construct of the cyanobacteriochrome Tlr0924 (SesA) without stable dimerization. Biochemistry. PMID 29072834 DOI: 10.1021/Acs.Biochem.7B00734  0.809
2017 Baloban M, Shcherbakova DM, Pletnev S, Pletnev VZ, Lagarias JC, Verkhusha VV. Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies. Chemical Science. 8: 4546-4557. PMID 28936332 DOI: 10.1039/C7Sc00855D  0.411
2017 Rockwell NC, Lagarias JC. Ferredoxin-dependent bilin reductases in eukaryotic algae: Ubiquity and diversity. Journal of Plant Physiology. PMID 28641882 DOI: 10.1016/J.Jplph.2017.05.022  0.662
2017 Rockwell NC, Lagarias JC. Phytochrome diversification in cyanobacteria and eukaryotic algae. Current Opinion in Plant Biology. 37: 87-93. PMID 28445833 DOI: 10.1016/J.Pbi.2017.04.003  0.692
2017 Rockwell NC, Martin SS, Li FW, Mathews S, Lagarias JC. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. The New Phytologist. PMID 28106912 DOI: 10.1111/nph.14422  0.663
2017 Rockwell NC, Martin SS, Lagarias JC. There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes. Photochemistry and Photobiology. PMID 28055111 DOI: 10.1111/php.12708  0.692
2016 Fushimi K, Rockwell NC, Enomoto G, Ni-Ni-Win, Martin SS, Gan F, Bryant DA, Ikeuchi M, Lagarias JC, Narikawa R. Cyanobacteriochrome Photoreceptors Lacking the Canonical Cys Residue. Biochemistry. PMID 27935696 DOI: 10.1021/Acs.Biochem.6B00940  0.834
2016 Hu W, Lagarias JC. A tightly regulated genetic selection system with signaling-active alleles of phytochrome B. Plant Physiology. PMID 27881727 DOI: 10.1104/Pp.16.01345  0.4
2016 Rockwell NC, Martin SS, Lagarias JC. Identification of cyanobacteriochromes detecting far-red light. Biochemistry. PMID 27295035 DOI: 10.1021/Acs.Biochem.6B00299  0.721
2016 Lim S, Yu Q, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 13C, and 15N chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state. Biomolecular Nmr Assignments. 10: 157-61. PMID 26537963 DOI: 10.1007/S12104-015-9657-4  0.76
2016 Chang CW, Gottlieb SM, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Chemical Physics Letters. 644: 225-230. DOI: 10.1016/J.Cplett.2015.11.059  0.713
2015 Berlin S, Carroll EC, Newman ZL, Okada HO, Quinn CM, Kallman B, Rockwell NC, Martin SS, Lagarias JC, Isacoff EY. Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging. Nature Methods. PMID 26167640 DOI: 10.1038/Nmeth.3480  0.601
2015 Jones MA, Hu W, Litthauer S, Lagarias JC, Harmer SL. A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light. Plant Physiology. 169: 814-25. PMID 26157113 DOI: 10.1104/Pp.15.00782  0.756
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct. Biochemistry. 54: 3772-83. PMID 25989712 DOI: 10.1021/Acs.Biochem.5B00438  0.776
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates. Biochemistry. 54: 2581-600. PMID 25843271 DOI: 10.1021/Bi501548T  0.782
2015 Rockwell NC, Martin SS, Lagarias JC. Identification of DXCF cyanobacteriochrome lineages with predictable photocycles. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 929-41. PMID 25738434 DOI: 10.1039/C4Pp00486H  0.694
2015 Gottlieb SM, Kim PW, Chang CW, Hanke SJ, Hayer RJ, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes. Biochemistry. 54: 1028-42. PMID 25545467 DOI: 10.1021/Bi5012755  0.804
2015 Rockwell NC, Martin SS, Gan F, Bryant DA, Lagarias JC. NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 258-69. PMID 25342233 DOI: 10.1039/C4Pp00336E  0.763
2014 Gottlieb SM, Chang CW, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome. The Journal of Physical Chemistry Letters. 5: 1527-33. PMID 26270091 DOI: 10.1021/Jz500378N  0.773
2014 Rockwell NC, Lagarias JC, Bhattacharya D. Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in Ecology and Evolution. 2. PMID 25729749 DOI: 10.3389/Fevo.2014.00066  0.728
2014 Duanmu D, Bachy C, Sudek S, Wong CH, Jiménez V, Rockwell NC, Martin SS, Ngan CY, Reistetter EN, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ. Marine algae and land plants share conserved phytochrome signaling systems. Proceedings of the National Academy of Sciences of the United States of America. 111: 15827-32. PMID 25267653 DOI: 10.1073/Pnas.1416751111  0.829
2014 Gan F, Zhang S, Rockwell NC, Martin SS, Lagarias JC, Bryant DA. Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light. Science (New York, N.Y.). 345: 1312-7. PMID 25214622 DOI: 10.1126/Science.1256963  0.749
2014 Chen A, Li C, Hu W, Lau MY, Lin H, Rockwell NC, Martin SS, Jernstedt JA, Lagarias JC, Dubcovsky J. Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod. Proceedings of the National Academy of Sciences of the United States of America. 111: 10037-44. PMID 24961368 DOI: 10.1073/Pnas.1409795111  0.755
2014 Kim PW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Heterogeneous photodynamics of the Pfr state in the cyanobacterial phytochrome Cph1 Biochemistry. 53: 4601-4611. PMID 24940993 DOI: 10.1021/Bi5005359  0.749
2014 Rockwell NC, Martin SS, Gulevich AG, Lagarias JC. Conserved phenylalanine residues are required for blue-shifting of cyanobacteriochrome photoproducts Biochemistry. 53: 3118-3130. PMID 24766217 DOI: 10.1021/Bi500037A  0.827
2014 Lim S, Rockwell NC, Martin SS, Dallas JL, Lagarias JC, Ames JB. Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected]. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 13: 951-62. PMID 24745038 DOI: 10.1039/C3Pp50442E  0.787
2014 Kim PW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1 Biochemistry. 53: 2818-2826. PMID 24742290 DOI: 10.1021/Bi500108S  0.758
2014 Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, Worden AZ, Lagarias JC. Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences of the United States of America. 111: 3871-6. PMID 24567382 DOI: 10.1073/Pnas.1401871111  0.833
2014 Gottlieb SM, Kim PW, Corley SC, Madsen D, Hanke SJ, Chang CW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Primary and secondary photodynamics of the violet/orange dual-cysteine NpF2164g3 cyanobacteriochrome domain from Nostoc punctiforme Biochemistry. 53: 1029-1040. PMID 24437620 DOI: 10.1021/Bi4015538  0.77
2014 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state. Biomolecular Nmr Assignments. 8: 259-62. PMID 23749453 DOI: 10.1007/S12104-013-9496-0  0.781
2014 Gottlieb SM, Chang CW, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Optically guided photoactivity: Coordinating tautomerization, photoisomerization, inhomogeneity, and reactive intermediates within the RcaE cyanobacteriochrome Journal of Physical Chemistry Letters. 5: 1527-1533. DOI: 10.1021/jz500378n  0.655
2013 Gottlieb SM, Kim PW, Rockwell NC, Hirose Y, Ikeuchi M, Lagarias JC, Larsen DS. Primary photodynamics of the green/red-absorbing photoswitching regulator of the chromatic adaptation e domain from fremyella diplosiphon Biochemistry. 52: 8198-8208. PMID 24147541 DOI: 10.1021/Bi400946Q  0.812
2013 Kim PW, Rockwell NC, Freer LH, Chang CW, Martin SS, Lagarias JC, Larsen DS. Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multi-pulse Manipulations. The Journal of Physical Chemistry Letters. 4: 2605-2609. PMID 24143267 DOI: 10.1021/Jz401443Q  0.733
2013 Kabasakal BV, Gae DD, Li J, Lagarias JC, Koehl P, Fisher AJ. His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics Archives of Biochemistry and Biophysics. 537: 233-242. PMID 23911721 DOI: 10.1016/J.Abb.2013.07.021  0.315
2013 Chang CW, Gottlieb SM, Kim PW, Rockwell NC, Lagarias JC, Larsen DS. Reactive ground-state pathways are not ubiquitous in red/green cyanobacteriochromes Journal of Physical Chemistry B. 117: 11229-11238. PMID 23725062 DOI: 10.1021/Jp402112U  0.745
2013 Hirose Y, Rockwell NC, Nishiyama K, Narikawa R, Ukaji Y, Inomata K, Lagarias JC, Ikeuchi M. Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle Proceedings of the National Academy of Sciences of the United States of America. 110: 4974-4979. PMID 23479641 DOI: 10.1073/Pnas.1302909110  0.836
2013 Duanmu D, Casero D, Dent RM, Gallaher S, Yang W, Rockwell NC, Martin SS, Pellegrini M, Niyogi KK, Merchant SS, Grossman AR, Lagarias JC. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proceedings of the National Academy of Sciences of the United States of America. 110: 3621-6. PMID 23345435 DOI: 10.1073/Pnas.1222375110  0.813
2013 Hu W, Franklin KA, Sharrock RA, Jones MA, Harmer SL, Lagarias JC. Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis Proceedings of the National Academy of Sciences of the United States of America. 110: 1542-1547. PMID 23302690 DOI: 10.1073/Pnas.1221738110  0.75
2013 Kim PW, Rockwell NC, Freer LH, Chang CW, Martin SS, Lagarias JC, Larsen DS. Unraveling the primary isomerization dynamics in cyanobacterial phytochrome Cph1 with multipulse manipulations Journal of Physical Chemistry Letters. 4: 2605-2609. DOI: 10.1021/jz401443q  0.664
2013 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Biomolecular Nmr Assignments. 1-4. DOI: 10.1007/s12104-013-9496-0  0.684
2012 Kim PW, Pan J, Rockwell NC, Chang CW, Taylor KC, Lagarias JC, Larsen DS. Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome. Chemical Physics Letters. 549: 86-92. PMID 23554514 DOI: 10.1016/J.Cplett.2012.08.044  0.735
2012 Rockwell NC, Martin SS, Lagarias JC. Red/green cyanobacteriochromes: Sensors of color and power Biochemistry. 51: 9667-9677. PMID 23151047 DOI: 10.1021/Bi3013565  0.728
2012 Park E, Park J, Kim J, Nagatani A, Lagarias JC, Choi G. Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters Plant Journal. 72: 537-546. PMID 22849408 DOI: 10.1111/J.1365-313X.2012.05114.X  0.332
2012 Freer LH, Kim PW, Corley SC, Rockwell NC, Zhao L, Thibert AJ, Lagarias JC, Larsen DS. Chemical inhomogeneity in the ultrafast dynamics of the DXCF cyanobacteriochrome Tlr0924. The Journal of Physical Chemistry. B. 116: 10571-81. PMID 22721495 DOI: 10.1021/Jp302637U  0.767
2012 Rockwell NC, Martin SS, Lagarias JC. Mechanistic insight into the photosensory versatility of DXCF cyanobacteriochromes Biochemistry. 51: 3576-3585. PMID 22494320 DOI: 10.1021/Bi300171S  0.743
2012 Rockwell NC, Martin SS, Gulevich AG, Lagarias JC. Phycoviolobilin formation and spectral tuning in the DXCF cyanobacteriochrome subfamily Biochemistry. 51: 1449-1463. PMID 22279972 DOI: 10.1021/Bi201783J  0.845
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Femtosecond photodynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 2. Reverse dynamics Biochemistry. 51: 619-630. PMID 22148731 DOI: 10.1021/bi2017365  0.744
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Femtosecond photodynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 1. Forward dynamics Biochemistry. 51: 608-618. PMID 22148715 DOI: 10.1021/Bi201507K  0.78
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Second-chance forward isomerization dynamics of the red/green cyanobacteriochrome NpR6012g4 from nostoc punctiforme Journal of the American Chemical Society. 134: 130-133. PMID 22107125 DOI: 10.1021/Ja209533X  0.734
2012 Freer LH, Kim PW, Corley SC, Rockwell NC, Zhao L, Thibert AJ, Lagarias JC, Larsen DS. Chemical inhomogeneity in the ultrafast dynamics of the DXCF cyanobacteriochrome Tlr0924 Journal of Physical Chemistry B. 116: 10571-10581. DOI: 10.1021/jp302637u  0.655
2011 Rockwell NC, Martin SS, Feoktistova K, Lagarias JC. Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes Proceedings of the National Academy of Sciences of the United States of America. 108: 11854-11859. PMID 21712441 DOI: 10.1073/Pnas.1107844108  0.731
2011 Song JY, Cho HS, Cho JI, Jeon JS, Lagarias JC, Park YI. Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803 Proceedings of the National Academy of Sciences of the United States of America. 108: 10780-10785. PMID 21670284 DOI: 10.1073/pnas.1104242108  0.602
2010 Shang L, Rockwell NC, Martin SS, Lagarias JC. Biliverdin amides reveal roles for propionate side chains in bilin reductase recognition and in holophytochrome assembly and photoconversion Biochemistry. 49: 6070-6082. PMID 20565135 DOI: 10.1021/Bi100756X  0.796
2010 Kohler AC, Gae DD, Richley MA, Stoll S, Gunn A, Lim S, Martin SS, Doukov TI, Britt RD, Ames JB, Lagarias JC, Fisher AJ. Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry. 49: 6206-18. PMID 20557110 DOI: 10.1021/Bi100728Q  0.711
2010 Rockwell NC, Lagarias JC. A brief history of phytochromes Chemphyschem. 11: 1172-1180. PMID 20155775 DOI: 10.1002/Cphc.200900894  0.725
2010 Hagiwara Y, Sugishima M, Khawn H, Kinoshita H, Inomata K, Shang L, Lagarias JC, Takahashi Y, Fukuyama K. Structural insights into vinyl reduction regiospecificity of phycocyanobilin:Ferredoxin oxidoreductase (PcyA) Journal of Biological Chemistry. 285: 1000-1007. PMID 19887371 DOI: 10.1074/Jbc.M109.055632  0.729
2009 Spillane KM, Dasgupta J, Lagarias JC, Mathies RA. Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis. Journal of the American Chemical Society. 131: 13946-8. PMID 19739629 DOI: 10.1021/Ja905822M  0.588
2009 Hu W, Su YS, Lagarias JC. A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks Molecular Plant. 2: 166-182. PMID 19529817 DOI: 10.1093/Mp/Ssn086  0.813
2009 Rockwell NC, Shang L, Martin SS, Lagarias JC. Distinct classes of red/far-red photochemistry within the phytochrome superfamily Proceedings of the National Academy of Sciences of the United States of America. 106: 6123-6127. PMID 19339496 DOI: 10.1073/Pnas.0902370106  0.818
2009 Dasgupta J, Frontiera RR, Taylor KC, Lagarias JC, Mathies RA. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 106: 1784-9. PMID 19179399 DOI: 10.1073/Pnas.0812056106  0.522
2009 Stoll S, Gunn A, Brynda M, Sughrue W, Kohler AC, Ozarowski A, Fisher AJ, Lagarias JC, Britt RD. Structure of the biliverdin radical intermediate in phycocyanobilin:ferredoxin oxidoreductase identified by high-field EPR and DFT. Journal of the American Chemical Society. 131: 1986-95. PMID 19159240 DOI: 10.1021/Ja808573F  0.539
2008 Rockwell NC, Njuguna SL, Roberts L, Castillo E, Parson VL, Dwojak S, Lagarias JC, Spiller SC. A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus Biochemistry. 47: 7304-7316. PMID 18549244 DOI: 10.1021/Bi800088T  0.718
2008 Hagiwara Y, Sugishima M, Khawn H, Kinoshita H, Inomata K, Shang L, Lagarias J, Takahashi Y, Fukuyama K. Snapshots in the reaction pathway of bilin reductase PcyA Acta Crystallographica Section a Foundations of Crystallography. 64: C244-C245. DOI: 10.1107/S0108767308092143  0.664
2007 Su YS, Lagarias JC. Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants Plant Cell. 19: 2124-2139. PMID 17660358 DOI: 10.1105/Tpc.107.051516  0.807
2007 Rockwell NC, Lagarias JC. Flexible mapping of homology onto structure with homolmapper. Bmc Bioinformatics. 8: 123. PMID 17428344 DOI: 10.1186/1471-2105-8-123  0.603
2007 Tu SL, Rockwell NC, Lagarias JC, Fisher AJ. Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements Biochemistry. 46: 1484-1494. PMID 17279614 DOI: 10.1021/Bi062038F  0.781
2006 Miller AE, Fischer AJ, Laurence T, Hollars CW, Saykally RJ, Lagarias JC, Huser T. Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 103: 11136-41. PMID 16844775 DOI: 10.1073/Pnas.0604724103  0.584
2006 Rockwell NC, Su YS, Lagarias JC. Phytochrome structure and signaling mechanisms Annual Review of Plant Biology. 57: 837-858. PMID 16669784 DOI: 10.1146/Annurev.Arplant.56.032604.144208  0.816
2006 Rockwell NC, Lagarias JC. The structure of phytochrome: A picture is worth a thousand spectra Plant Cell. 18: 4-14. PMID 16387836 DOI: 10.1105/Tpc.105.038513  0.675
2006 Tu SL, Sughrue W, Britt RD, Lagarias JC. A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase Journal of Biological Chemistry. 281: 3127-3136. PMID 16327013 DOI: 10.1074/Jbc.M510126200  0.779
2005 Fischer AJ, Rockwell NC, Jang AY, Ernst LA, Waggoner AS, Duan Y, Lei H, Lagarias JC. Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes. Biochemistry. 44: 15203-15. PMID 16285723 DOI: 10.1021/Bi051633Z  0.741
2005 Tu S, Gunn A, Toney MD, Britt RD, Lagarias JC. Biliverdin Reduction by Cyanobacterial Phycocyanobilin:Ferredoxin Oxidoreductase (PcyA) Proceeds via Linear Tetrapyrrole Radical Intermediates [J. Am. Chem. Soc.2004,126, 8682−8693]. Journal of the American Chemical Society. 127: 3230-3231. DOI: 10.1021/Ja059902W  0.744
2005 Tu SL, Lagarias JC. The Phytochromes Handbook of Photosensory Receptors. 121-149. DOI: 10.1002/352760510X.ch6  0.321
2004 Fischer AJ, Lagarias JC. Harnessing phytochrome's glowing potential. Proceedings of the National Academy of Sciences of the United States of America. 101: 17334-9. PMID 15548612 DOI: 10.1073/Pnas.0407645101  0.631
2004 Tu SL, Gunn A, Toney MD, Britt RD, Lagarias JC. Biliverdin reduction by cyanobacterial phycocyanobilin:ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates. Journal of the American Chemical Society. 126: 8682-93. PMID 15250720 DOI: 10.1021/Ja049280Z  0.79
2004 Terauchi K, Montgomery BL, Grossman AR, Lagarias JC, Kehoe DM. RcaE is a complementary chromatic adaptation photoreceptor required for green and red light responsiveness Molecular Microbiology. 51: 567-577. PMID 14756794 DOI: 10.1046/J.1365-2958.2003.03853.X  0.762
2004 Kami C, Mukougawa K, Muramoto T, Yokota A, Shinomura T, Lagarias JC, Kohchi T. Complementation of phytochrome chromophore-deficient Arabidopsis by expression of phycocyanobilin:ferredoxin oxidoreductase Proceedings of the National Academy of Sciences of the United States of America. 101: 1099-1104. PMID 14722358 DOI: 10.1073/Pnas.0307615100  0.644
2004 Fischer AJ, Coleman WJ, Yang MM, Lagarias JC. Engineering phytochromes: Biliproteins that switch and glow Proceedings of Spie - the International Society For Optical Engineering. 5329: 33-43. DOI: 10.1117/12.524195  0.638
2003 Franklin KA, Linley PJ, Montgomery BL, Lagarias JC, Thomas B, Jackson SD, Terry MJ. Misregulation of tetrapyrrole biosynthesis in transgenic tobacco seedlings expressing mammalian biliverdin reductase Plant Journal. 35: 717-728. PMID 12969425 DOI: 10.1046/J.1365-313X.2003.01840.X  0.789
2003 Frankenberg N, Lagarias JC. Phycocyanobilin:ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic. The Journal of Biological Chemistry. 278: 9219-26. PMID 12514179 DOI: 10.1074/Jbc.M211643200  0.322
2002 Gryczynski I, Piszczek G, Lakowicz JR, Lagarias JC. Two-photon excitation of a phytofluor protein. Journal of Photochemistry and Photobiology. a, Chemistry. 150: 13-19. PMID 31824128 DOI: 10.1016/S1010-6030(02)00021-7  0.387
2002 Montgomery BL, Lagarias JC. Phytochrome ancestry: sensors of bilins and light. Trends in Plant Science. 7: 357-66. PMID 12167331 DOI: 10.1016/S1360-1385(02)02304-X  0.655
2001 Gambetta GA, Lagarias JC. Genetic engineering of phytochrome biosynthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 98: 10566-71. PMID 11553807 DOI: 10.1073/Pnas.191375198  0.369
2001 Frankenberg N, Mukougawa K, Kohchi T, Lagarias JC. Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms. The Plant Cell. 13: 965-78. PMID 11283349 DOI: 10.1105/Tpc.13.4.965  0.403
2001 Kohchi T, Mukougawa K, Frankenberg N, Masuda M, Yokota A, Lagarias JC. The Arabidopsis HY2 gene encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. The Plant Cell. 13: 425-36. PMID 11226195 DOI: 10.1105/Tpc.13.2.425  0.397
2001 Montgomery BL, Franklin KA, Terry MJ, Thomas B, Jackson SD, Crepeau MW, Lagarias JC. Biliverdin reductase-induced phytochrome chromophore deficiency in transgenic tobacco. Plant Physiology. 125: 266-77. PMID 11154335 DOI: 10.1104/Pp.125.1.266  0.576
2000 Wu SH, Lagarias JC. Defining the bilin lyase domain: lessons from the extended phytochrome superfamily. Biochemistry. 39: 13487-95. PMID 11063585 DOI: 10.1021/Bi001123Z  0.356
2000 Andel F, Murphy JT, Haas JA, McDowell MT, van der Hoef I, Lugtenburg J, Lagarias JC, Mathies RA. Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues. Biochemistry. 39: 2667-76. PMID 10704217 DOI: 10.1021/Bi991688Z  0.403
1999 Montgomery BL, Yeh KC, Crepeau MW, Lagarias JC. Modification of distinct aspects of photomorphogenesis via targeted expression of mammalian biliverdin reductase in transgenic Arabidopsis plants. Plant Physiology. 121: 629-39. PMID 10517855 DOI: 10.1104/Pp.121.2.629  0.636
1999 Fankhauser C, Yeh KC, Lagarias JC, Zhang H, Elich TD, Chory J. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis. Science (New York, N.Y.). 284: 1539-41. PMID 10348744 DOI: 10.1126/Science.284.5419.1539  0.556
1999 Lagarias JC, Montgomery BL, Murphy JT, Wu S. Phytofluors: Phytochrome-Based Orange Fluorescent Protein Probes Microscopy and Microanalysis. 5: 1050-1051. DOI: 10.1017/S1431927600018572  0.572
1998 Nozue K, Kanegae T, Imaizumi T, Fukuda S, Okamoto H, Yeh KC, Lagarias JC, Wada M. A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1. Proceedings of the National Academy of Sciences of the United States of America. 95: 15826-30. PMID 9861055 DOI: 10.1073/Pnas.95.26.15826  0.493
1997 Murphy JT, Lagarias JC. The phytofluors: a new class of fluorescent protein probes. Current Biology : Cb. 7: 870-6. PMID 9382811 DOI: 10.1016/S0960-9822(06)00375-7  0.334
1997 Yeh KC, Wu SH, Murphy JT, Lagarias JC. A cyanobacterial phytochrome two-component light sensory system. Science (New York, N.Y.). 277: 1505-8. PMID 9278513 DOI: 10.1126/science.277.5331.1505  0.366
1997 Lagarias DM, Crepeau MW, Maines MD, Lagarias JC. Regulation of photomorphogenesis by expression of mammalian biliverdin reductase in transgenic Arabidopsis plants. The Plant Cell. 9: 675-88. PMID 9165746 DOI: 10.1105/tpc.9.5.675  0.313
1997 Murphy JT, Lagarias JC. Purification and characterization of recombinant affinity peptide-tagged oat phytochrome A. Photochemistry and Photobiology. 65: 750-8. PMID 9114754 DOI: 10.1111/J.1751-1097.1997.Tb01920.X  0.376
1996 Andel F, Lagarias JC, Mathies RA. Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome. Biochemistry. 35: 15997-6008. PMID 8973170 DOI: 10.1021/Bi962175K  0.424
1995 Lagarias DM, Wu SH, Lagarias JC. Atypical phytochrome gene structure in the green alga Mesotaenium caldariorum. Plant Molecular Biology. 29: 1127-42. PMID 8616213 DOI: 10.1007/Bf00020457  0.324
1995 Li L, Murphy JT, Lagarias JC. Continuous fluorescence assay of phytochrome assembly in vitro. Biochemistry. 34: 7923-30. PMID 7794904 DOI: 10.1021/Bi00024A017  0.344
1993 Morand LZ, Kidd DG, Lagarias JC. Phytochrome levels in the green alga Mesotaenium caldariorum are light regulated. Plant Physiology. 101: 97-104. PMID 8278502  0.826
1993 Terry MJ, Wahleithner JA, Lagarias JC. Biosynthesis of the plant photoreceptor phytochrome. Archives of Biochemistry and Biophysics. 306: 1-15. PMID 8215388 DOI: 10.1006/abbi.1993.1473  0.742
1992 Li L, Lagarias JC. Phytochrome assembly. Defining chromophore structural requirements for covalent attachment and photoreversibility. The Journal of Biological Chemistry. 267: 19204-10. PMID 1527043  0.369
1991 Wahleithner JA, Li LM, Lagarias JC. Expression and assembly of spectrally active recombinant holophytochrome. Proceedings of the National Academy of Sciences of the United States of America. 88: 10387-91. PMID 1961704 DOI: 10.1073/Pnas.88.23.10387  0.749
1990 Berkelman T, Lagarias JC. Calcium Transport in the Green Alga Mesotaenium caldariorum: Preliminary Characterization and Subcellular Distribution. Plant Physiology. 93: 748-57. PMID 16667532  0.67
1990 McMichael RW, Lagarias JC. Phosphopeptide mapping of Avena phytochrome phosphorylated by protein kinases in vitro. Biochemistry. 29: 3872-8. PMID 2354157 DOI: 10.1021/Bi00468A011  0.775
1990 Kidd DG, Lagarias JC. Phytochrome from the green alga Mesotaenium caldariorum. Purification and preliminary characterization. The Journal of Biological Chemistry. 265: 7029-35. PMID 2324111  0.735
1990 Fodor SP, Lagarias JC, Mathies RA. Resonance Raman analysis of the Pr and Pfr forms of phytochrome. Biochemistry. 29: 11141-6. PMID 2271702 DOI: 10.1021/Bi00502A018  0.394
1989 Wong YS, McMichael RW, Lagarias JC. Properties of a polycation-stimulated protein kinase associated with purified Avena phytochrome. Plant Physiology. 91: 709-18. PMID 16667091  0.769
1989 Wong YS, Lagarias JC. Affinity labeling of Avena phytochrome with ATP analogs. Proceedings of the National Academy of Sciences of the United States of America. 86: 3469-73. PMID 16594043 DOI: 10.1073/PNAS.86.10.3469  0.596
1988 Lagarias JC, Klotz AV, Dallas JL, Glazer AN, Bishop JE, O'Connell JF, Rapoport H. Exclusive A-ring linkage for singly attached phycocyanobilins and phycoerythrobilins in phycobiliproteins. Absence of singly D-ring-linked bilins. The Journal of Biological Chemistry. 263: 12977-85. PMID 3417648  0.569
1988 Fodor SP, Lagarias JC, Mathies RA. Resonance Raman spectra of the Pr-form of phytochrome. Photochemistry and Photobiology. 48: 129-36. PMID 3222324 DOI: 10.1111/J.1751-1097.1988.Tb02797.X  0.53
1988 Pratt LH, Cordonnier MM, Lagarias JC. Mapping of antigenic domains on phytochrome from etiolated Avena sativa L. by immunoblot analysis of proteolytically derived peptides. Archives of Biochemistry and Biophysics. 267: 723-35. PMID 2463784 DOI: 10.1016/0003-9861(88)90081-1  0.313
1987 Elich TD, Lagarias JC. Phytochrome Chromophore Biosynthesis : Both 5-Aminolevulinic Acid and Biliverdin Overcome Inhibition by Gabaculine in Etiolated Avena sativa L. Seedlings. Plant Physiology. 84: 304-10. PMID 16665435 DOI: 10.1104/Pp.84.2.304  0.317
1987 Lagarias JC, Kelly JM, Cyr KL, Smith WO. COMPARATIVE PHOTOCHEMICAL ANALYSIS OF HIGHLY PURIFIED 124 KILODALTON OAT and RYE PHYTOCHROMES in vitro Photochemistry and Photobiology. 46: 5-13. DOI: 10.1111/J.1751-1097.1987.Tb04729.X  0.403
1986 Berkelman TR, Lagarias JC. Visualization of bilin-linked peptides and proteins in polyacrylamide gels. Analytical Biochemistry. 156: 194-201. PMID 3526971 DOI: 10.1016/0003-2697(86)90173-9  0.721
1986 Bishop JE, Lagarias JC, Nagy JO, Schoenleber RW, Rapoport H, Klotz AV, Glazer AN. Phycobiliprotein-bilin linkage diversity. I. Structural studies on A- and D-ring-linked phycocyanobilins. The Journal of Biological Chemistry. 261: 6790-6. PMID 3084489  0.56
1985 Kelly JM, Lagarias JC. Photochemistry of 124-kilodalton Avena phytochrome under constant illumination in vitro Biochemistry. 24: 6003-6010. DOI: 10.1021/Bi00342A047  0.327
1983 Lagarias JC, Yokoyama WH, Bordner J, Shih WC, Klein MP, Rapoport H. Cyclopeptide alkaloids. Conformational analysis of the dihydro-p-phencyclopeptine nucleus Journal of the American Chemical Society. 105: 1031-1040. DOI: 10.1021/Ja00342A064  0.382
1982 Lagarias JC. The structure of verdohemochrome and its implications for the mechanism of heme catabolism Bba - General Subjects. 717: 12-19. PMID 7104384 DOI: 10.1016/0304-4165(82)90373-7  0.308
1980 Goff D, Lagarias JC, Shih WC, Klein MP, Rapoport H. Cyclopeptide alkaloids. Synthetic, spectroscopic and conformational studies of phencyclopeptine model compounds The Journal of Organic Chemistry. 45: 4813-4817. DOI: 10.1021/Jo01312A001  0.461
1980 Lagarias JC, Rapoport H. Chromopeptides from phytochrome. The structure and linkage of the PR form of the phytochrome chromophore Journal of the American Chemical Society. 102: 4821-4828. DOI: 10.1021/Ja00534A042  0.454
1979 Lagarias JC, Goff D, Klein FK, Rapoport H. Cyclopeptide Alkaloids. Phencyclopeptines From the Polymorphic Species Ceanothus integerrimus. Journal of Natural Products. 42: 220-227. PMID 27802386 DOI: 10.1021/Np50002A013  0.445
1979 Lagarias JC, Glazer AN, Rapoport H. Chromopeptides from C-phycocyanin. Structure and linkage of a phycocyanobilin bound to the .beta. subunit Journal of the American Chemical Society. 101: 5030-5037. DOI: 10.1021/Ja00511A038  0.569
1979 LAGARIAS JC, GLAZER AN, RAPOPORT H. ChemInform Abstract: CHROMOPEPTIDES FROM C-PHYCOCYANIN. STRUCTURE AND LINKAGE OF A PHYCOCYANOBILIN BOUND TO THE β SUBUNIT Chemischer Informationsdienst. 10. DOI: 10.1002/chin.197948346  0.446
1978 Lagarias JC, Houghten RA, Rapoport H. Cyclopeptide alkaloids. Synthesis of the ring system and its ion affinity Journal of the American Chemical Society. 100: 8202-8209. DOI: 10.1021/Ja00494A030  0.34
Show low-probability matches.