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Daniel A. Polasky - Publications

Affiliations: 
2014-2019 Chemistry University of Michigan, Ann Arbor, Ann Arbor, MI 
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Rojas Ramírez C, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Efficient Analysis of Proteome-Wide FPOP Data by FragPipe. Analytical Chemistry. 95: 16131-16137. PMID 37878603 DOI: 10.1021/acs.analchem.3c02388  0.439
2023 Ramírez CR, Espino JA, Jones LM, Polasky DA, Nesvizhskii AI. Efficient Analysis of Proteome-wide FPOP Data by FragPipe. Biorxiv : the Preprint Server For Biology. PMID 37333157 DOI: 10.1101/2023.06.01.543263  0.443
2023 Polasky DA, Geiszler DJ, Yu F, Li K, Teo GC, Nesvizhskii AI. MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics. Molecular & Cellular Proteomics : McP. 100538. PMID 37004988 DOI: 10.1016/j.mcpro.2023.100538  0.326
2022 D'Amico CI, Polasky DA, Steyer DJ, Ruotolo BT, Kennedy RT. Ion Mobility-Mass Spectrometry Coupled to Droplet Microfluidics for Rapid Protein Structure Analysis and Drug Discovery. Analytical Chemistry. 94: 13084-13091. PMID 36098981 DOI: 10.1021/acs.analchem.2c02307  0.703
2022 Yan T, Palmer AB, Geiszler DJ, Polasky DA, Boatner LM, Burton NR, Armenta E, Nesvizhskii AI, Backus KM. Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation. Analytical Chemistry. PMID 35195394 DOI: 10.1021/acs.analchem.1c04402  0.358
2022 Polasky DA, Geiszler DJ, Yu F, Nesvizhskii AI. Multiattribute Glycan Identification and FDR Control for Glycoproteomics. Molecular & Cellular Proteomics : McP. 21: 100205. PMID 35091091 DOI: 10.1016/j.mcpro.2022.100205  0.336
2021 Vallejo DD, Kang J, Coghlan J, Ramírez CR, Polasky DA, Kurulugama RT, Fjeldsted JC, Schwendeman AA, Ruotolo BT. Collision-Induced Unfolding Reveals Stability Differences in Infliximab Therapeutics under Native and Heat Stress Conditions. Analytical Chemistry. 93: 16166-16174. PMID 34808055 DOI: 10.1021/acs.analchem.1c03946  0.594
2020 Yu F, Haynes SE, Teo GC, Avtonomov DM, Polasky DA, Nesvizhskii AI. Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant. Molecular & Cellular Proteomics : McP. PMID 32616513 DOI: 10.1074/Mcp.Tir120.002048  0.531
2020 Polasky DA, Dixit SM, Keating MF, Gadkari VV, Andrews PC, Ruotolo BT. Pervasive Charge Solvation Permeates Native-like Protein Ions and Dramatically Influences Top-down Sequencing Data. Journal of the American Chemical Society. PMID 32203657 DOI: 10.1021/Jacs.0C01076  0.735
2019 Fantin SM, Parson KF, Niu S, Liu J, Polasky DA, Dixit SM, Ferguson-Miller SM, Ruotolo BT. Collision Induced Unfolding Classifies Ligands Bound to the Integral Membrane Translocator Protein (TSPO). Analytical Chemistry. PMID 31743004 DOI: 10.1021/Acs.Analchem.9B03208  0.688
2019 Polasky DA, Dixit SM, Vallejo DD, Kulju KD, Ruotolo BT. An Algorithm for Building Multi-State Classifiers Based on Collision Induced Unfolding Data. Analytical Chemistry. PMID 31310505 DOI: 10.1021/Acs.Analchem.9B02650  0.795
2019 Vallejo DD, Polasky DA, Kurulugama RT, Eschweiler JD, Fjeldsted JC, Ruotolo BT. A Modified Drift Tube Ion Mobility-Mass Spectrometer for Charge-Multiplexed Collision-Induced Unfolding. Analytical Chemistry. PMID 31194508 DOI: 10.1021/Acs.Analchem.9B00427  0.804
2019 Polasky DA, Dixit SM, Fantin SM, Ruotolo BT. CIUSuite 2: Next-Generation Software for the Analysis of Gas-phase Protein Unfolding Data. Analytical Chemistry. PMID 30668913 DOI: 10.1021/Acs.Analchem.8B05762  0.702
2018 Polasky DA, Lermyte F, Nshanian M, Sobott F, Andrews PC, Loo J, Ruotolo BT. Fixed-charge Trimethyl Pyrilium Modification Enables Enhanced Top-down Mass Spectrometry Sequencing of Intact Protein Complexes. Analytical Chemistry. PMID 29360341 DOI: 10.1021/Acs.Analchem.7B04806  0.723
2017 Avtonomov DM, Polasky DA, Ruotolo BT, Nesvizhskii AI. IMTBX and Grppr: Software for Top-Down Proteomics Utilizing Ion Mobility-Mass Spectrometry. Analytical Chemistry. PMID 29278491 DOI: 10.1021/Acs.Analchem.7B04999  0.74
2017 Dixit SM, Polasky DA, Ruotolo BT. Collision induced unfolding of isolated proteins in the gas phase: past, present, and future. Current Opinion in Chemical Biology. 42: 93-100. PMID 29207278 DOI: 10.1016/J.Cbpa.2017.11.010  0.811
2017 Haynes SE, Polasky DA, Dixit SM, Majmudar JD, Neeson K, Ruotolo BT, Martin BR. Variable-Velocity Traveling-Wave Ion Mobility Separation Enhancing Peak Capacity for Data-Independent Acquisition Proteomics. Analytical Chemistry. PMID 28471653 DOI: 10.1021/Acs.Analchem.7B00112  0.78
2015 Walsh JM, Ren X, Zampariello C, Polasky DA, McKay DL, Blumberg JB, Chen CO. Liquid chromatography with tandem mass spectrometry quantification of urinary proanthocyanin A2 dimer and its potential use as a biomarker of cranberry intake. Journal of Separation Science. PMID 26573891 DOI: 10.1002/Jssc.201500922  0.324
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