Year |
Citation |
Score |
2019 |
Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD, Capriotti E, Bromberg Y, Wang Y, Miller M, Martelli PL, Savojardo C, Babbi G, Casadio R, Cao Y, ... ... Kann MG, et al. Assessing the performance of in-silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Human Mutation. PMID 31241222 DOI: 10.1002/Humu.23849 |
0.37 |
|
2018 |
Peters B, Brenner SE, Wang E, Slonim D, Kann MG. Putting benchmarks in their rightful place: The heart of computational biology. Plos Computational Biology. 14: e1006494. PMID 30408027 DOI: 10.1371/Journal.Pcbi.1006494 |
0.313 |
|
2018 |
Cirincione AG, Clark KL, Kann MG. Pathway networks generated from human disease phenome. Bmc Medical Genomics. 11: 75. PMID 30255817 DOI: 10.1186/S12920-018-0386-2 |
0.359 |
|
2017 |
Gauran IIM, Park J, Lim J, Park D, Zylstra J, Peterson T, Kann M, Spouge JL. Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data. Biometrics. PMID 28940296 DOI: 10.1111/Biom.12779 |
0.358 |
|
2017 |
Peterson TA, Gauran IIM, Park J, Park D, Kann MG. Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples. Plos Computational Biology. 13: e1005428. PMID 28426665 DOI: 10.1371/Journal.Pcbi.1005428 |
0.429 |
|
2016 |
Peterson TA, Mort M, Cooper DN, Radivojac P, Kann MG, Mooney SD. Regulatory Single Nucleotide Variant Predictor (RSVP) Increases Predictive Performance of Functional Regulatory Variants. Human Mutation. PMID 27406314 DOI: 10.1002/Humu.23049 |
0.393 |
|
2014 |
Burger JD, Doughty E, Khare R, Wei CH, Mishra R, Aberdeen J, Tresner-Kirsch D, Wellner B, Kann MG, Lu Z, Hirschman L. Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database : the Journal of Biological Databases and Curation. 2014. PMID 25246425 DOI: 10.1093/Database/Bau094 |
0.35 |
|
2013 |
Peterson TA, Doughty E, Kann MG. Towards precision medicine: advances in computational approaches for the analysis of human variants. Journal of Molecular Biology. 425: 4047-63. PMID 23962656 DOI: 10.1016/J.Jmb.2013.08.008 |
0.384 |
|
2013 |
Peterson TA, Park D, Kann MG. A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations. Bmc Genomics. 14: S5. PMID 23819456 DOI: 10.1186/1471-2164-14-S3-S5 |
0.438 |
|
2012 |
Gonzalez MW, Kann MG. Chapter 4: Protein interactions and disease. Plos Computational Biology. 8: e1002819. PMID 23300410 DOI: 10.1371/Journal.Pcbi.1002819 |
0.561 |
|
2012 |
Nehrt NL, Peterson TA, Park D, Kann MG. Domain landscapes of somatic mutations in cancer. Bmc Genomics. 13: S9. PMID 22759657 DOI: 10.1186/1471-2164-13-S4-S9 |
0.385 |
|
2012 |
Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O. A mutation-centric approach to identifying pharmacogenomic relations in text. Journal of Biomedical Informatics. 45: 835-41. PMID 22683993 DOI: 10.1016/J.Jbi.2012.05.003 |
0.315 |
|
2012 |
Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA. Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. Journal of the American Medical Informatics Association : Jamia. 19: 306-16. PMID 22319180 DOI: 10.1136/Amiajnl-2011-000656 |
0.333 |
|
2012 |
Peterson TA, Nehrt NL, Park D, Kann MG. Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer. Journal of the American Medical Informatics Association : Jamia. 19: 275-83. PMID 22319177 DOI: 10.1136/Amiajnl-2011-000655 |
0.45 |
|
2012 |
Capriotti E, Nehrt NL, Kann MG, Bromberg Y. Bioinformatics for personal genome interpretation. Briefings in Bioinformatics. 13: 495-512. PMID 22247263 DOI: 10.1093/Bib/Bbr070 |
0.38 |
|
2011 |
Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG. Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. Bioinformatics (Oxford, England). 27: 408-15. PMID 21138947 DOI: 10.1093/Bioinformatics/Btq667 |
0.389 |
|
2011 |
Nehrt NL, Peterson TA, Kann MG. Clustering disease connections using DMDM: Domain Mapping of Disease Mutations F1000research. 2. DOI: 10.7490/F1000Research.2001.1 |
0.312 |
|
2010 |
Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG. DMDM: domain mapping of disease mutations. Bioinformatics (Oxford, England). 26: 2458-9. PMID 20685956 DOI: 10.1093/Bioinformatics/Btq447 |
0.419 |
|
2010 |
Carroll HD, Kann MG, Sheetlin SL, Spouge JL. Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics. Bioinformatics (Oxford, England). 26: 1708-13. PMID 20505002 DOI: 10.1093/Bioinformatics/Btq270 |
0.302 |
|
2010 |
Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, Bagchi A, Peters BJ, Sathyesh R, Li B, Sun Y, Xue B, Shah NH, Kann MG, Cooper DN, Radivojac P, et al. In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Human Mutation. 31: 335-46. PMID 20052762 DOI: 10.1002/Humu.21192 |
0.432 |
|
2010 |
Kann MG. Advances in translational bioinformatics: computational approaches for the hunting of disease genes. Briefings in Bioinformatics. 11: 96-110. PMID 20007728 DOI: 10.1093/Bib/Bbp048 |
0.385 |
|
2009 |
Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM. Correlated evolution of interacting proteins: looking behind the mirrortree. Journal of Molecular Biology. 385: 91-8. PMID 18930732 DOI: 10.1016/J.Jmb.2008.09.078 |
0.374 |
|
2008 |
Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, Radivojac P, Heiland R, Mooney SD. MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Research. 36: D815-9. PMID 17827212 DOI: 10.1093/Nar/Gkm659 |
0.348 |
|
2007 |
Kann MG. Protein interactions and disease: computational approaches to uncover the etiology of diseases. Briefings in Bioinformatics. 8: 333-46. PMID 17638813 DOI: 10.1093/Bib/Bbm031 |
0.452 |
|
2007 |
Kann MG, Sheetlin SL, Park Y, Bryant SH, Spouge JL. The identification of complete domains within protein sequences using accurate E-values for semi-global alignment. Nucleic Acids Research. 35: 4678-85. PMID 17596268 DOI: 10.1093/Nar/Gkm414 |
0.408 |
|
2007 |
Kann MG, Jothi R, Cherukuri PF, Przytycka TM. Predicting protein domain interactions from coevolution of conserved regions. Proteins. 67: 811-20. PMID 17357158 DOI: 10.1002/Prot.21347 |
0.443 |
|
2005 |
Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics (Oxford, England). 21: i241-50. PMID 15961463 DOI: 10.1093/Bioinformatics/Bti1009 |
0.4 |
|
2005 |
Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH. A structure-based method for protein sequence alignment. Bioinformatics (Oxford, England). 21: 1451-6. PMID 15613392 DOI: 10.1093/Bioinformatics/Bti233 |
0.421 |
|
2002 |
Kann MG, Goldstein RA. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison. Proteins. 48: 367-76. PMID 12112703 DOI: 10.1002/Prot.10117 |
0.491 |
|
2000 |
Kann M, Qian B, Goldstein RA. Optimization of a new score function for the detection of remote homologs Proteins: Structure, Function and Genetics. 41: 498-503. PMID 11056037 DOI: 10.1002/1097-0134(20001201)41:4<498::Aid-Prot70>3.0.Co;2-3 |
0.587 |
|
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