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Lee S Katz, PhD - Publications

Affiliations: 
2004-2010 Georgia Institute of Technology, Atlanta, GA 
 2010-2011 Meningitis Lab Centers for Disease Control and Prevention (CDC) 
 2011- Enteric Diseases Laboratory Branch Centers for Disease Control and Prevention (CDC) 
Website:
https://about.me/lskatz
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lindsey RL, Gladney LM, Huang AD, Griswold T, Katz LS, Dinsmore BA, Im MS, Kucerova Z, Smith PA, Lane C, Carleton HA. Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics. Frontiers in Microbiology. 14: 1225207. PMID 38156000 DOI: 10.3389/fmicb.2023.1225207  0.405
2023 Chen JC, Patel K, Smith PA, Vidyaprakash E, Snyder C, Tagg KA, Webb HE, Schroeder MN, Katz LS, Rowe LA, Howard D, Griswold T, Lindsey RL, Carleton HA. Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens-Associated Outbreaks, 2016-2019. Emerging Infectious Diseases. 29: 1895-1899. PMID 37610207 DOI: 10.3201/eid2909.230069  0.346
2023 Gladney LM, Griswold T, Turnsek M, Im MS, Parsons MMB, Katz LS, Tarr CL, Lee CC. Characterization of a Nonagglutinating Toxigenic Vibrio cholerae Isolate. Microbiology Spectrum. e0018223. PMID 37195209 DOI: 10.1128/spectrum.00182-23  0.327
2023 Walters C, Chen J, Stroika S, Katz LS, Turnsek M, Compère V, Im MS, Gomez S, McCullough A, Landaverde C, Putney J, Caidi H, Folster J, Carleton HA, Boncy J, et al. Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains. Journal of Clinical Microbiology. e0014223. PMID 36877025 DOI: 10.1128/jcm.00142-23  0.54
2022 McIntosh T, Kucerova Z, Katz LS, Lilley CM, Rowe LA, Unoarumhi Y, Batra D, Burnett E, Smikle M, Lee C. Genome Sequences of Hemolytic and Nonhemolytic Listeria innocua Strains from Human, Food, and Environmental Sources. Microbiology Resource Announcements. e0072322. PMID 36445150 DOI: 10.1128/mra.00723-22  0.503
2022 Xiaoli L, Hagey JV, Park DJ, Gulvik CA, Young EL, Alikhan NF, Lawsin A, Hassell N, Knipe K, Oakeson KF, Retchless AC, Shakya M, Lo CC, Chain P, Page AJ, ... ... Katz LS, et al. Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Peerj. 10: e13821. PMID 36093336 DOI: 10.7717/peerj.13821  0.504
2022 Ochieng C, Chen JC, Osita MP, Katz LS, Griswold T, Omballa V, Ng'eno E, Ouma A, Wamola N, Opiyo C, Achieng L, Munywoki PK, Hendriksen RS, Freeman M, Mikoleit M, et al. Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya. Plos Neglected Tropical Diseases. 16: e0010704. PMID 36007074 DOI: 10.1371/journal.pntd.0010704  0.339
2022 Katz LS, Griswold T, Morrison SS, Caravas JA, Zhang S, den Bakker HC, Deng X, Carleton HA. Mashtree: a rapid comparison of whole genome sequence files. Journal of Open Source Software. 4. PMID 35978566 DOI: 10.21105/joss.01762  0.546
2022 Katz LS, Griswold T, Morrison SS, Caravas JA, Zhang S, den Bakker HC, Deng X, Carleton HA. Mashtree: a rapid comparison of whole genome sequence files. Journal of Open Source Software. 4. PMID 35978566 DOI: 10.21105/joss.01762  0.546
2022 Griswold T, Kapsak C, Chen JC, den Bakker HC, Williams G, Kelley A, Vidyaprakash E, Katz LS. SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data. Journal of Open Source Software. 6. PMID 35360664 DOI: 10.21105/joss.02334  0.322
2022 Stevens EL, Carleton HA, Beal J, Tillman GE, Lindsey RL, Lauer AC, Pightling A, Jarvis KG, Ottesen A, Ramachandran P, Hintz L, Katz LS, Folster JP, Whichard JM, Trees E, et al. The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States. Journal of Food Protection. PMID 35259246 DOI: 10.4315/JFP-21-437  0.378
2021 Wagner DD, Carleton HA, Trees E, Katz LS. Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks. Peerj. 9: e12446. PMID 34900416 DOI: 10.7717/peerj.12446  0.517
2019 Li S, Zhang S, Baert L, Jagadeesan B, Ngom-Bru C, Griswold T, Katz LS, Carleton HA, Deng X. Implications of mobile genetic elements for single nucleotide polymorphism subtyping and source tracking investigations. Applied and Environmental Microbiology. PMID 31585993 DOI: 10.1128/Aem.01985-19  0.399
2019 Halpin JL, Dykes JK, Katz L, Centurioni DA, Perry MJ, Egan CT, Lúquez C. Molecular Characterization of Clostridium botulinum Harboring the bont/B7 Gene. Foodborne Pathogens and Disease. PMID 30932710 DOI: 10.1089/Fpd.2018.2600  0.46
2018 Pattabiraman V, Katz LS, Chen JC, McCullough AE, Trees E. Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016. Plos One. 13: e0208735. PMID 30596673 DOI: 10.1371/Journal.Pone.0208735  0.542
2017 Timme RE, Rand H, Shumway M, Trees EK, Simmons M, Agarwala R, Davis S, Tillman GE, Defibaugh-Chavez S, Carleton HA, Klimke WA, Katz LS. Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance. Peerj. 5: e3893. PMID 29372115 DOI: 10.7717/Peerj.3893  0.479
2017 Page AJ, Alikhan NF, Carleton HA, Seemann T, Keane JA, Katz LS. Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Microbial Genomics. 3: e000124. PMID 29026660 DOI: 10.1099/mgen.0.000124  0.347
2017 Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, et al. SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology. Microbial Genomics. 3: e000116. PMID 29026651 DOI: 10.1099/mgen.0.000116  0.477
2017 Chen Y, Luo Y, Carleton H, Timme R, Melka D, Muruvanda T, Wang C, Kastanis G, Katz LS, Turner L, Fritzinger A, Moore T, Stones R, Blankenship J, Salter M, et al. Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013. Applied and Environmental Microbiology. PMID 28550058 DOI: 10.1128/Aem.00633-17  0.565
2017 Katz LS, Griswold T, Williams-Newkirk AJ, Wagner D, Petkau A, Sieffert C, Van Domselaar G, Deng X, Carleton HA. A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens. Frontiers in Microbiology. 8: 375. PMID 28348549 DOI: 10.3389/Fmicb.2017.00375  0.585
2016 Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Björkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, et al. Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nature Microbiology. 2: 16185. PMID 27723724 DOI: 10.1038/Nmicrobiol.2016.185  0.532
2016 Jackson KA, Stroika S, Katz LS, Beal J, Brandt E, Nadon C, Reimer A, Major B, Conrad A, Tarr C, Jackson BR, Mody RK. Use of Whole Genome Sequencing and Patient Interviews To Link a Case of Sporadic Listeriosis to Consumption of Prepackaged Lettuce. Journal of Food Protection. 79: 806-9. PMID 27296429 DOI: 10.4315/0362-028X.Jfp-15-384  0.529
2016 Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, et al. Implementation of Nationwide Real-Time Whole-Genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 27090985 DOI: 10.1093/Cid/Ciw242  0.554
2015 Bergholz TM, den Bakker HC, Katz LS, Silk BJ, Jackson KA, Kucerova Z, Joseph LA, Turnsek M, Gladney LM, Halpin JL, Xavier K, Gossack J, Ward TJ, Frace M, Tarr CL. Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing. Applied and Environmental Microbiology. PMID 26590286 DOI: 10.1128/Aem.02440-15  0.575
2015 Kahler AM, Haley BJ, Chen A, Mull BJ, Tarr CL, Turnsek M, Katz LS, Humphrys MS, Derado G, Freeman N, Boncy J, Colwell RR, Huq A, Hill VR. Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti. The American Journal of Tropical Medicine and Hygiene. 92: 118-25. PMID 25385860 DOI: 10.4269/Ajtmh.13-0601  0.36
2014 Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT, Weppelmann TA, Katz LS, Tarr CL, Colwell RR, Morris JG, et al. Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection. Mbio. 5. PMID 25538191 DOI: 10.1128/Mbio.01824-14  0.482
2014 Gladney LM, Katz LS, Knipe KM, Rowe LA, Conley AB, Rishishwar L, Mariño-Ramírez L, Jordan IK, Tarr CL. Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen. Genome Announcements. 2. PMID 25414502 DOI: 10.1128/Genomea.01188-14  0.675
2014 Folster JP, Katz L, McCullough A, Parsons MB, Knipe K, Sammons SA, Boncy J, Tarr CL, Whichard JM. Multidrug-resistant IncA/C plasmid in Vibrio cholerae from Haiti. Emerging Infectious Diseases. 20: 1951-3. PMID 25340576 DOI: 10.3201/Eid2011.140889  0.403
2014 Katz LS, Turnsek M, Kahler A, Hill VR, Boyd EF, Tarr CL. Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype. Genome Announcements. 2. PMID 25013135 DOI: 10.1128/Genomea.00617-14  0.483
2014 Kalburge SS, Polson SW, Boyd Crotty K, Katz L, Turnsek M, Tarr CL, Martinez-Urtaza J, Boyd EF. Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493. Genome Announcements. 2. PMID 24625868 DOI: 10.1128/Genomea.00159-14  0.573
2014 Jackson B, Jackson K, Tarr C, Evans P, Klimke W, Kubota K, Kucerova Z, Katz L, Trees E, Carleton H, Stroika S, Conrad A, Besser J, Gerner-Smidt P, Mody R. 1338Improving Detection and Investigation of Listeriosis Outbreaks Using Real-Time Whole-Genome Sequencing Open Forum Infectious Diseases. 1. DOI: 10.1093/Ofid/Ofu051.155  0.553
2014 Deng X, Katz LS, Fields PI, Zhang W. High-Throughput Sequencing Dna Methods in Food Safety: Molecular Typing of Foodborne and Waterborne Bacterial Pathogens. 65-83. DOI: 10.1002/9781118278666.ch4  0.363
2013 Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, Turnsek MA, Guo Y, Wang S, Paxinos EE, Orata F, Gladney LM, Stroika S, Folster JP, Rowe L, Freeman MM, et al. Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. Mbio. 4. PMID 23820394 DOI: 10.1128/Mbio.00398-13  0.563
2013 Lomonaco S, Verghese B, Gerner-Smidt P, Tarr C, Gladney L, Joseph L, Katz L, Turnsek M, Frace M, Chen Y, Brown E, Meinersmann R, Berrang M, Knabel S. Novel epidemic clones of Listeria monocytogenes, United States, 2011. Emerging Infectious Diseases. 19: 147-50. PMID 23260778 DOI: 10.3201/Eid1901.121167  0.353
2012 Rishishwar L, Katz LS, Sharma NV, Rowe L, Frace M, Dolan Thomas J, Harcourt BH, Mayer LW, Jordan IK. Genomic basis of a polyagglutinating isolate of Neisseria meningitidis. Journal of Bacteriology. 194: 5649-56. PMID 22904290 DOI: 10.1128/Jb.06604-11  0.735
2012 Kostka JE, Green SJ, Rishishwar L, Prakash O, Katz LS, Mariño-Ramírez L, Jordan IK, Munk C, Ivanova N, Mikhailova N, Watson DB, Brown SD, Palumbo AV, Brooks SC. Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities. Journal of Bacteriology. 194: 4461-2. PMID 22843592 DOI: 10.1128/Jb.00871-12  0.619
2012 Anderson R, Wang X, Briere EC, Katz LS, Cohn AC, Clark TA, Messonnier NE, Mayer LW. Haemophilus haemolyticus isolates causing clinical disease. Journal of Clinical Microbiology. 50: 2462-5. PMID 22573587 DOI: 10.1128/Jcm.06575-11  0.544
2012 Theodore MJ, Anderson RD, Wang X, Katz LS, Vuong JT, Bell ME, Juni BA, Lowther SA, Lynfield R, MacNeil JR, Mayer LW. Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus. Journal of Clinical Microbiology. 50: 1422-4. PMID 22301020 DOI: 10.1128/Jcm.06702-11  0.539
2011 Jordan IK, Conley AB, Antonov IV, Arthur RA, Cook ED, Cooper GP, Jones BL, Knipe KM, Lee KJ, Liu X, Mitchell GJ, Pande PR, Petit RA, Qin S, Rajan VN, ... ... Katz LS, et al. Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus. Journal of Bacteriology. 193: 5879-80. PMID 21952546 DOI: 10.1128/Jb.05863-11  0.745
2011 Katz LS, Humphrey JC, Conley AB, Nelakuditi V, Kislyuk AO, Agrawal S, Jayaraman P, Harcourt BH, Olsen-Rasmussen MA, Frace M, Sharma NV, Mayer LW, Jordan IK. Neisseria Base: a comparative genomics database for Neisseria meningitidis. Database : the Journal of Biological Databases and Curation. 2011: bar035. PMID 21930505 DOI: 10.1093/Database/Bar035  0.732
2011 Katz LS, Sharma NV, Harcourt BH, Thomas JD, Wang X, Mayer LW, Jordan IK. Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. Journal of Bacteriology. 193: 3633-41. PMID 21622743 DOI: 10.1128/Jb.01198-10  0.699
2010 Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, et al. A computational genomics pipeline for prokaryotic sequencing projects. Bioinformatics (Oxford, England). 26: 1819-26. PMID 20519285 DOI: 10.1093/Bioinformatics/Btq284  0.73
2009 Katz LS, Bolen CR, Harcourt BH, Schmink S, Wang X, Kislyuk A, Taylor RT, Mayer LW, Jordan IK. Meningococcus genome informatics platform: A system for analyzing multilocus sequence typing data Nucleic Acids Research. 37. PMID 19468047 DOI: 10.1093/Nar/Gkp288  0.715
2008 Jordan IK, Katz LS, Denver DR, Streelman JT. Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans. Bmc Systems Biology. 2: 96. PMID 19014554 DOI: 10.1186/1752-0509-2-96  0.437
2008 Loh YH, Katz LS, Mims MC, Kocher TD, Yi SV, Streelman JT. Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids. Genome Biology. 9: R113. PMID 18616806 DOI: 10.1186/Gb-2008-9-7-R113  0.495
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